Altered gene expression in multiple myeloma patients with gain
of 1q21 locus.

a 2011

Altered gene expression in multiple myeloma patients with gain of 1q21 locus.

NĚMEC, Pavel; Fedor KRYUKOV; Jan SMETANA; Elena Vladimirovna DEMENTYEVA; Henrieta GREŠLIKOVÁ et al.

Základní údaje

Originální název

Altered gene expression in multiple myeloma patients with gain of 1q21 locus.

Autoři

NĚMEC, Pavel; Fedor KRYUKOV; Jan SMETANA; Elena Vladimirovna DEMENTYEVA; Henrieta GREŠLIKOVÁ; Renata KUPSKÁ; Drahomíra KYJOVSKÁ; Lenka ZAHRADOVÁ; Luděk POUR; Petr KUGLÍK a Roman HÁJEK

Vydání

13th International Myeloma Workshop, 2011

Další údaje

Jazyk

angličtina

Typ výsledku

Konferenční abstrakt

Obor

30200 3.2 Clinical medicine

Stát vydavatele

Velká Británie a Severní Irsko

Utajení

není předmětem státního či obchodního tajemství

Impakt faktor

Impact factor: 6.424

Označené pro přenos do RIV

Organizační jednotka

Lékařská fakulta

ISSN

Klíčová slova anglicky

gain 1q21; multiple myeloma; gene expression

Změněno: 21. 6. 2011 10:31, Mgr. Anna Potáčová, Ph.D.

Anotace

V originále

Chromosome 1 abnormalities namely gain of 1q21 locus is one of the few cytogenetic factors with unfavourable prognostic impact in patients with MM. We analysed gene expression in patients with/without 1q21 gain. The 1q21 gain status was evaluated in 34 patients by FISH and confirmed by arrayCGH (Agilent Human Genome CGH Microarray, 4x44k) when DNA was available. CD138+ cells were separated by MACS. Total RNA was transcribed into cDNA (Ambion WT Sense Target assay), labeled and hybridized to the Affymetrix GeneChip Human Gene ST 1.0 array. Acquisition of Affymetrix array images, RMA normalization algorithm, t-test with Benjamini-Hochberg FDR were performed using appropriate software. The 1q21 gain was detected in 50% (17/34) cases. When comparing expression of patients with/without 1q21 gain, total of 63 transcripts showed altered expression. We found 27 differentialy expressed transcripts with FC<1.5 (22 up, and 5 down), 17 of over-expressed transcripts were mapped exactly to chromosome 1. The most altered expression (FC>2.0, p<0.05) showed increase of UCHL1 (ubiquitin thiolesterase), GPR63 (G-protein receptor), TUBB4 (tubulin), KIF21B (kinesin) and decrease of STAP1, MAML2, FAM13A and PDE4B (phosphodiesterase), respectively. Based on ontology of revealed genes with altered expression, we anticipate that patients with 1q21 gain might have increased microtubules activity and/or dysregulation of G-protein associated signal transduction. This may reflect the pathogenesis of multiple myeloma.

Návaznosti

NS10207, projekt VaV

Název: Úloha abnormalit chromozómu 1 a kaskády NF-kappaB v patogenezi mnohočetného myelomu

Investor: Ministerstvo zdravotnictví ČR, Úloha abnormalit chromozómu 1 a kaskády NF-kappaβ v patogenezi mnohočetného myelomu

NT11154, projekt VaV

Název: Úloha mitotické disrupce v B lymfocytech u mnohočetném myelomu

Investor: Ministerstvo zdravotnictví ČR, Úloha mitotické disrupce v B lymfocytech u mnohočetného myelomu

Citovat

NĚMEC, Pavel; Fedor KRYUKOV; Jan SMETANA; Elena Vladimirovna DEMENTYEVA; Henrieta GREŠLIKOVÁ; Renata KUPSKÁ; Drahomíra KYJOVSKÁ; Lenka ZAHRADOVÁ; Luděk POUR; Petr KUGLÍK a Roman HÁJEK. Altered gene expression in multiple myeloma patients with gain of 1q21 locus. In 13th International Myeloma Workshop. 2011. ISSN 0390-6078.

@proceedings{943492,
   author = {Němec, Pavel and Kryukov, Fedor and Smetana, Jan and Dementyeva, Elena Vladimirovna and Grešliková, Henrieta and Kupská, Renata and Kyjovská, Drahomíra and Zahradová, Lenka and Pour, Luděk and Kuglík, Petr and Hájek, Roman},
   booktitle = {13th International Myeloma Workshop},
   keywords = {gain 1q21; multiple myeloma; gene expression},
   language = {eng},
   title = {Altered gene expression in multiple myeloma patients with gain of 1q21 locus.},
   year = {2011}
}

TY  - CONF
ID  - 943492
AU  - Němec, Pavel - Kryukov, Fedor - Smetana, Jan - Dementyeva, Elena Vladimirovna - Grešliková, Henrieta - Kupská, Renata - Kyjovská, Drahomíra - Zahradová, Lenka - Pour, Luděk - Kuglík, Petr - Hájek, Roman
PY  - 2011
TI  - Altered gene expression in multiple myeloma patients with gain of 1q21 locus.
KW  - gain 1q21
KW  - multiple myeloma
KW  - gene expression
N2  - Chromosome 1 abnormalities namely gain of 1q21 locus is one of the few cytogenetic factors with unfavourable prognostic impact in patients with MM. We analysed gene expression in patients with/without 1q21 gain. The 1q21 gain status was evaluated in 34 patients by FISH and confirmed by arrayCGH (Agilent Human Genome CGH Microarray, 4x44k) when DNA was available. CD138+ cells were separated by MACS. Total RNA was transcribed into cDNA (Ambion WT Sense Target assay), labeled and hybridized to the Affymetrix GeneChip Human Gene ST 1.0 array. Acquisition of Affymetrix array images, RMA normalization algorithm, t-test with Benjamini-Hochberg FDR were performed using appropriate software. The 1q21 gain was detected in 50% (17/34) cases. When comparing expression of patients with/without 1q21 gain, total of 63 transcripts showed altered expression. We found 27 differentialy expressed transcripts with FC<1.5 (22 up, and 5 down), 17 of over-expressed transcripts were mapped exactly to chromosome 1. The most altered expression (FC>2.0, p<0.05) showed increase of UCHL1 (ubiquitin thiolesterase), GPR63 (G-protein receptor), TUBB4 (tubulin), KIF21B (kinesin) and decrease of STAP1, MAML2, FAM13A and PDE4B (phosphodiesterase), respectively. Based on ontology of revealed genes with altered expression, we anticipate that patients with 1q21 gain might have increased microtubules activity and/or dysregulation of G-protein associated signal transduction. This may reflect the pathogenesis of multiple myeloma.
ER  -

NĚMEC, Pavel; Fedor KRYUKOV; Jan SMETANA; Elena Vladimirovna DEMENTYEVA; Henrieta GREŠLIKOVÁ; Renata KUPSKÁ; Drahomíra KYJOVSKÁ; Lenka ZAHRADOVÁ; Luděk POUR; Petr KUGLÍK a Roman HÁJEK. Altered gene expression in multiple myeloma patients with gain of 1q21 locus. In \textit{13th International Myeloma Workshop}. 2011. ISSN~0390-6078.

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