Publication Records

MRÁZ, Radoslav, Karel ŠTĚPKA, Matěj PEKÁR, Petr MATULA and Stanislav PEKÁR. MAPHIS-Measuring arthropod phenotypes using hierarchical image segmentations. Methods in Ecology and Evolution. HOBOKEN: WILEY, 2024, vol. 15, No 1, p. 36-42. ISSN 2041-210X. Available from: https://dx.doi.org/10.1111/2041-210X.14250.

MRÁZ, Radoslav, Karel ŠTĚPKA, Matěj PEKÁR, Petr MATULA and Stanislav PEKÁR. MAPHIS - Measuring arthropod phenotypes using hierarchical image segmentations. 2023. Available from: https://dx.doi.org/10.1111/2041-210X.14250.

PREISLER, Jan, Markéta MACHÁLKOVÁ, Barbora ADAMOVÁ, Jarmila NAVRÁTILOVÁ, Marek STIBOREK, Stanislava MELIORISOVÁ, Jiří KROUPA, Pavel HOUŠKA, Jan MICHÁLEK, Karel ŠTĚPKA, Katarzyna Anna RADASZKIEWICZ, Adam PRUŠKA, Viktor KANICKÝ, Michal KOZUBEK and Jan ŠMARDA. Multimodal Imaging of 3D Cell Aggregates. In MSB 2021. 2021.

PAVLATOVSKÁ, Barbora, Markéta MACHÁLKOVÁ, Petra BRISUDOVÁ, Adam PRUŠKA, Karel ŠTĚPKA, Jan MICHÁLEK, Tereza NEČASOVÁ, Petr BENEŠ, Jan ŠMARDA, Jan PREISLER, Michal KOZUBEK and Jarmila NAVRÁTILOVÁ. Lactic Acidosis Interferes With Toxicity of Perifosine to Colorectal Cancer Spheroids: Multimodal Imaging Analysis. Frontiers in Oncology. Lausanne: Frontiers Media S.A., 2020, vol. 10, December, p. 1-18. ISSN 2234-943X. Available from: https://dx.doi.org/10.3389/fonc.2020.581365.

PAVLATOVSKÁ, Barbora, Jarmila NAVRÁTILOVÁ, Markéta MACHÁLKOVÁ, Jan MICHÁLEK, Karel ŠTĚPKA, Adam PRUŠKA, Michal KOZUBEK, Petr BENEŠ, Jan ŠMARDA and Jan PREISLER. Combined therapy of perifosine and ABT-737 results in higher cytotoxic effect but also induces expression of EMT markers in colon cancer cell lines. In Spetses Summer School: Molecular Mechanisms in Signal Transduction and Cancer, Greece. 2019.

MACHÁLKOVÁ, Markéta, Barbora PAVLATOVSKÁ, Jan MICHÁLEK, Adam PRUŠKA, Karel ŠTĚPKA, Tereza NEČASOVÁ, Katarzyna Anna RADASZKIEWICZ, Michal KOZUBEK, Jan ŠMARDA, Jan PREISLER and Jarmila NAVRÁTILOVÁ. Drug Penetration Analysis in 3D Cell Cultures Using Fiducial-Based Semiautomatic Coregistration of MALDI MSI and Immunofluorescence Images. Analytical Chemistry. American Chemical Society, 2019, vol. 91, No 21, p. 13475-13484. ISSN 0003-2700. Available from: https://dx.doi.org/10.1021/acs.analchem.9b02462.

NAVRÁTILOVÁ, Jarmila, Markéta MACHÁLKOVÁ, Barbora PAVLATOVSKÁ, Jan MICHÁLEK, Adam PRUŠKA, Karel ŠTĚPKA, Katarzyna Anna RADASZKIEWICZ, Jan PREISLER, Jan ŠMARDA and Michal KOZUBEK. Fiducial-based semi-automatic coregistration and analysis of multimodal MALDI MS and immunofluorescent data. In Imaging Principles of Life 2019. 2019.

MICHÁLEK, Jan, Karel ŠTĚPKA, Michal KOZUBEK, Jarmila NAVRÁTILOVÁ, Barbora PAVLATOVSKÁ, Markéta MACHÁLKOVÁ, Jan PREISLER and Adam PRUŠKA. Quantitative Assessment of Anti-Cancer Drug Efficacy From Coregistered Mass Spectrometry and Fluorescence Microscopy Images of Multicellular Tumor Spheroids. Microscopy and Microanalysis. Cambridge University Press, 2019, vol. 25, No 6, p. 1311-1322. ISSN 1431-9276. Available from: https://dx.doi.org/10.1017/S1431927619014983.

KOTRBOVÁ, Anna, Karel ŠTĚPKA, Martin MAŠKA, Juraj PÁLENIK, Ladislav ILKOVICS, Dobromila KLEMOVÁ, Marek KRAVEC, František HUBATKA, Zankruti DAVE, Aleš HAMPL, Vítězslav BRYJA, Pavel MATULA and Vendula POSPÍCHALOVÁ. TEM ExosomeAnalyzer: a computer-assisted software tool for quantitative evaluation of extracellular vesicles in transmission electron microscopy images. Journal of Extracellular Vesicles. Taylor and Francis Ltd., 2019, vol. 8, No 1, p. 1-13. ISSN 2001-3078. Available from: https://dx.doi.org/10.1080/20013078.2018.1560808.

EISELLEOVÁ, Lívia, Viktor LUKJANOV, Šimon FARKAŠ, David SVOBODA, Karel ŠTĚPKA and Irena KOUTNÁ. The role of RNA Polymerase II contiguity and long-range interactions in the regulation of gene expression in human pluripotent stem cells. Stem Cells International. Hindawi, 2019, vol. 2019, Article ID 1375807, p. 1-12. ISSN 1687-966X. Available from: https://dx.doi.org/10.1155/2019/1375807.

PAVLATOVSKÁ, Barbora, Jarmila NAVRÁTILOVÁ, Markéta MACHÁLKOVÁ, Petra BRISUDOVÁ, Jan MICHÁLEK, Karel ŠTĚPKA, Adam PRUŠKA, Michal KOZUBEK, Petr BENEŠ, Jan ŠMARDA and Jan PREISLER. Tumor-specific microenvironment contributes to the perifosine resistance in 3D colorectal cancer (CRC) models. In Goodbye Flat Biology: Advancing 3D-based Models for Cancer Biology and Drug Discovery, Berlin, Germany. 2019.

PAVLATOVSKÁ, Barbora, Jarmila NAVRÁTILOVÁ, Markéta MACHÁLKOVÁ, Adam PRUŠKA, Jan MICHÁLEK, Karel ŠTĚPKA, Michal KOZUBEK, Jan ŠMARDA and Jan PREISLER. The effect and distribution of the drug perifosine in 2D and 3D colorectal cell cultures. In Summer School in Translational Cancer Research 2018. 2018.

PAVLATOVSKÁ, Barbora, Jarmila NAVRÁTILOVÁ, Markéta MACHÁLKOVÁ, Adam PRUŠKA, Jan MICHÁLEK, Karel ŠTĚPKA, Michal KOZUBEK, Jan ŠMARDA and Jan PREISLER. The effect and distribution of the drug perifosine in 2D and 3D colorectal cell cultures. (The effect and distribution of the drug perifosine in 2D and 3D colorectal cell cultures). In XIX. Meeting of Biochemists and Molecular Biologists. 2018.

ŠTĚPKA, Karel, Martin MAŠKA, Jakub Jozef PÁLENIK, Vendula POSPÍCHALOVÁ, Anna KOTRBOVÁ, Ladislav ILKOVICS, Dobromila KLEMOVÁ, Aleš HAMPL, Vítězslav BRYJA and Pavel MATULA. Automatic Detection and Segmentation of Exosomes in Transmission Electron Microscopy. In Gang Hua, Hervé Jégou. Computer Vision -- ECCV 2016 Workshops: Amsterdam, The Netherlands, October 8-10 and 15-16, 2016, Proceedings, Part I. Cham, Switzerland: Springer International Publishing, 2016, p. 318-325. ISBN 978-3-319-46603-3. Available from: https://dx.doi.org/10.1007/978-3-319-46604-0_23.

STEJSKAL, Stanislav, Karel ŠTĚPKA, Lenka TESAŘOVÁ, Karel STEJSKAL, Martina MATĚJKOVÁ, Pavel ŠIMARA, Zbyněk ZDRÁHAL and Irena KRONTORÁD KOUTNÁ. Cell cycle-dependent changes in H3K56ac in human cells. Cell Cycle. Philadelphia: Taylor&Francis Inc, 2015, vol. 14, No 24, p. 3851-3863. ISSN 1538-4101. Available from: https://dx.doi.org/10.1080/15384101.2015.1106760.

ŠTĚPKA, Karel, Pavel MATULA, Petr MATULA, Stefan WOERZ, Karl ROHR and Michal KOZUBEK. Performance and Sensitivity Evaluation of 3-D Spot Detection Methods in Confocal Microscopy. Cytometry Part A. John Wiley & Sons, 2015, 87A, No 8, p. 759-772. ISSN 1552-4922. Available from: https://dx.doi.org/10.1002/cyto.a.22692.

STEJSKAL, Stanislav, Karel STEJSKAL, Karel ŠTĚPKA, Martina MATĚJKOVÁ, Zbyněk ZDRÁHAL and Irena KRONTORÁD KOUTNÁ. H3K56ac distribution in cancer and embryonic cell lines during cell cycle. In EMBO Stem Cells in Cancer and Regenerative Medicine. 2014.

ŠTĚPKA, Karel and Martin FALK. Image Analysis of Gene Locus Positions within Chromosome Territories in Human Lymphocytes. In Petr Hliněný, Zdeněk Dvořák, Jiří Jaroš, Jan Kofroň, Jan Kořenek, Petr Matula, Karel Pala. Mathematical and Engineering Methods in Computer Science : Volume 8934 of the series Lecture Notes in Computer Science. Neuveden: Springer International Publishing, 2014, p. 125-134. ISBN 978-3-319-14895-3. Available from: https://dx.doi.org/10.1007/978-3-319-14896-0_11.

STEJSKAL, Stanislav, Karel ŠTĚPKA, Karel STEJSKAL, Martina MATĚJKOVÁ, Pavel MATULA and Irena KRONTORÁD KOUTNÁ. Regulation of H3K56ac during cell cycle in mammalian cells. In Advances in Molecular and Cancer Biology. 2014.

ŠTĚPKA, Karel. Automated Cell Counting in Bürker Chamber. In J.-K. Kamarainen and M. Koskela. 18th Scandinavian Conference on Image Analysis, SCIA 2013. Espoo (Finland): Springer, 2013, p. 236-245. ISBN 978-3-642-38885-9. Available from: https://dx.doi.org/10.1007/978-3-642-38886-6_23.

STEJSKAL, Stanislav, Martina MATĚJKOVÁ, Karel ŠTĚPKA, Michaela POTĚŠILOVÁ, Lenka TESAŘOVÁ, Pavel ŠIMARA and Irena KRONTORÁD KOUTNÁ. Cell cycle dependent changes of H3K56ac levels in cancer and hES cells. In 2013 IMB Conference: Chromatin Dynamics and Stem Cells. 2013.