Výpis publikací

PLANAS IGLESIAS, Joan; Marika MAJEROVÁ; Daniel PLUSKAL; Michal VAŠINA; Jiří DAMBORSKÝ; Zbyněk PROKOP; Martin MAREK a David BEDNÁŘ. Automated Engineering Protein Dynamics via Loop Grafting: Improving Renilla Luciferase Catalysis. ACS Catalysis. WASHINGTON: AMER CHEMICAL SOC, 2025, roč. 15, č. 4, s. 3391-3404. ISSN 2155-5435. Dostupné z: https://doi.org/10.1021/acscatal.4c06207.

KOHOUT, Pavel; Michal VAŠINA; Marika MAJEROVÁ; Veronika NOVÁKOVÁ; Jiří DAMBORSKÝ; David BEDNÁŘ; Martin MAREK; Zbyněk PROKOP a Stanislav MAZURENKO. Engineering Dehalogenase Enzymes Using Variational Autoencoder-Generated Latent Spaces and Microfluidics. JACS Au. WASHINGTON: AMER CHEMICAL SOC, 2025, roč. 5, č. 2, s. 838-850. ISSN 2691-3704. Dostupné z: https://doi.org/10.1021/jacsau.4c01101.

LAU, Emily S.; Marika MAJEROVÁ; Nicholai M. HENSLEY; Arnab MUKHERJEE; Michal VAŠINA; Daniel PLUSKAL; Jiří DAMBORSKÝ; Zbyněk PROKOP; Jerome DELROISSE; Wendy-Shirley BAYAERT; Elise PAREY; Paola OLIVERI; Ferdinand MARLETAZ; Martin MAREK a Todd H. OAKLEY. Functional Characterization of Luciferase in a Brittle Star Indicates Parallel Evolution Influenced by Genomic Availability of Haloalkane Dehalogenase. Molecular Biology and Evolution. OXFORD: Oxford University Press, 2025, roč. 42, č. 5, s. 1-10. ISSN 0737-4038. Dostupné z: https://doi.org/10.1093/molbev/msaf081.

DAMBORSKÝ, Jiří; Petr KOUBA; Josef SIVIC; Michal VAŠINA; David BEDNÁŘ a Stanislav MAZURENKO. Quantum computing for faster enzyme discovery and engineering. Nature Catalysis. BERLIN: Nature Portfolio, 2025, roč. 8, č. 9, s. 872-880. ISSN 2520-1158. Dostupné z: https://doi.org/10.1038/s41929-025-01410-w.

MAJEROVÁ, Marika; Michal VAŠINA; Daniel PLUSKAL; Karolina SEDLÁČKOVÁ; Zbyněk PROKOP; Jiří DAMBORSKÝ a Martin MAREK. Nová duální dehalogenáza-luciferáza z hvězdice křehké Amphiura filiformis. 2024.

MAJEROVÁ, Marika; Michal VAŠINA; Daniel PLUSKAL; Karolina SEDLÁČKOVÁ; Zbyněk PROKOP; Jiří DAMBORSKÝ a Martin MAREK. Nová vysoce aktivní luciferáza z hvězdice křehké Amphiura filiformis. 2024.

KUNKA, Antonín; Sérgio Manuel MARQUES; Martin HAVLÁSEK; Michal VAŠINA; Nikola VELÁTOVÁ; Lucia CENGELOVÁ; David KOVÁŘ; Jiří DAMBORSKÝ; Martin MAREK; David BEDNÁŘ a Zbyněk PROKOP. Advancing Enzyme's Stability and Catalytic Efficiency through Synergy of Force-Field Calculations, Evolutionary Analysis, and Machine Learning. ACS Catalysis. WASHINGTON: AMER CHEMICAL SOC, 2023, roč. 13, č. 19, s. 12506-12518. ISSN 2155-5435. Dostupné z: https://doi.org/10.1021/acscatal.3c02575.

VAŠINA, Michal; David KOVÁŘ; Jiří DAMBORSKÝ; Ding YUN; Tianjin YANG; Andrew DE MELLO; Stanislav MAZURENKO; Stavros STAVRAKIS a Zbyněk PROKOP. In-depth analysis of biocatalysts by microfluidics: An emerging source of data for machine learning. Biotechnology Advances. OXFORD: Elsevier, 2023, roč. 66, September 2023, s. 1-22. ISSN 0734-9750. Dostupné z: https://doi.org/10.1016/j.biotechadv.2023.108171.

VAŠINA, Michal; Pavel VAŇÁČEK; Jiri HON; David KOVÁŘ; Hana FALDYNOVÁ; Antonín KUNKA; Tomáš BURYŠKA; Christoffel P. S. BADENHORST; Stanislav MAZURENKO; David BEDNÁŘ; Stavros STAVRAKIS; Uwe T. BORNSCHEUER; Andrew DEMELLO; Jiří DAMBORSKÝ a Zbyněk PROKOP. Advanced database mining of efficient haloalkane dehalogenases by sequence and structure bioinformatics and microfluidics. Chem Catalysis. Elsevier, 2022, roč. 2, č. 10, s. 2704-2725. ISSN 2667-1093. Dostupné z: https://doi.org/10.1016/j.checat.2022.09.011.

KOVÁŘ, David; Stanislav MAZURENKO; Michal VAŠINA; Jiří DAMBORSKÝ a Zbyněk PROKOP. MicroPEX Data Analyser 1.0*. 2022.

VAŠINA, Michal; Jan VELECKÝ; Joan PLANAS IGLESIAS; Sérgio Manuel MARQUES; Jana ŠKAŘUPOVÁ; Jiří DAMBORSKÝ; David BEDNÁŘ; Stanislav MAZURENKO a Zbyněk PROKOP. Tools for computational design and high-throughput screening of therapeutic enzymes. ADVANCED DRUG DELIVERY REVIEWS. NETHERLANDS: ELSEVIER, 2022, roč. 183, April 2022, s. 1-16. ISSN 0169-409X. Dostupné z: https://doi.org/10.1016/j.addr.2022.114143.

MARKOVÁ, Klára; Antonín KUNKA; Klaudia CHMELOVÁ; Martin HAVLÁSEK; Petra BABKOVÁ; Sérgio Manuel MARQUES; Michal VAŠINA; Joan PLANAS IGLESIAS; Radka CHALOUPKOVÁ; David BEDNÁŘ; Zbyněk PROKOP; Jiří DAMBORSKÝ a Martin MAREK. Computational Enzyme Stabilization Can Affect Folding Energy Landscapes and Lead to Catalytically Enhanced Domain-Swapped Dimers. ACS Catalysis. WASHINGTON: AMER CHEMICAL SOC, 2021, roč. 11, č. 21, s. 12864-12885. ISSN 2155-5435. Dostupné z: https://doi.org/10.1021/acscatal.1c03343.

SCHENKMAYEROVÁ, Andrea; José Gaspar RANGEL PAMPLONA PIZARRO PINTO; Martin TOUL; Martin MAREK; Lenka HERNYCHOVÁ; Joan PLANAS IGLESIAS; Veronika LIŠKOVÁ; Daniel PLUSKAL; Michal VAŠINA; Stephane EMOND; Mark DÖRR; Radka CHALOUPKOVÁ; David BEDNÁŘ; Zbyněk PROKOP; Florian HOLLFELDER; Uwe T. BORNSCHEUER a Jiří DAMBORSKÝ. Engineering the protein dynamics of an ancestral luciferase. Nature Communications. London: Nature Publishing Group, 2021, roč. 12, č. 1, s. 3616-3631. ISSN 2041-1723. Dostupné z: https://doi.org/10.1038/s41467-021-23450-z.

VAŠINA, Michal; Pavel VAŇÁČEK; Jiří DAMBORSKÝ a Zbyněk PROKOP. Exploration of enzyme diversity: High-throughput techniques for protein production and microscale biochemical characterization. Online. In Dan S. Tawfik. Methods in Enzymology - Enzyme Engineering and Evolution: General Methods. Neuveden: Elsevier Inc, 2020, s. 51-85. ISBN 978-0-12-821149-6. Dostupné z: https://doi.org/10.1016/bs.mie.2020.05.004.

BURYŠKA, Tomáš; Michal VAŠINA; Fabrice GIELEN; Pavel VAŇÁČEK; Liisa VAN VLIET; Jan JEZEK; Zdenek PILAT; Pavel ZEMÁNEK; Jiří DAMBORSKÝ; Florian HOLLFELDER a Zbyněk PROKOP. Controlled Oil/Water Partitioning of Hydrophobic Substrates Extending the Bioanalytical Applications of Droplet-Based Microfluidics. Analytical Chemistry. Washington, D.C.: AMER CHEMICAL SOC, 2019, roč. 91, č. 15, s. 10008-10015. ISSN 0003-2700. Dostupné z: https://doi.org/10.1021/acs.analchem.9b01839.