Výpis publikací

SAMMUT, Stephanie; Katarína GREŠOVÁ; Dimosthenis TZIMOTOUDIS; Eva MARŠÁLKOVÁ; David ČECHÁK a Panagiotis ALEXIOU. miRBench: novel benchmark datasets for microRNA binding site prediction that mitigate against prevalent microRNA frequency class bias. Computational systems bioinformatics / Life Sciences Society. Computational Systems Bioinformatics Conference. OXFORD UNIV PRESS, 2025, roč. 41, č. 1, s. 542-551, 11 s. ISSN 1367-4803. Dostupné z: https://dx.doi.org/10.1093/bioinformatics/btaf233.

SLANINÁKOVÁ, Terézia; Eva MARŠÁLKOVÁ; Katarína GREŠOVÁ; Aleš KŘENEK; Jaroslav OĽHA; Tomáš PAVLÍK; Pavlína ŠPRINGEROVÁ; David SEHNAL a Matej ANTOL. Refining Structure-Based Search in AlphaFold DB: Including confidence metrics into AlphaFind. In CZECH PHD BIOINFORMATICS CONFERENCE. 2025. Dostupné z: https://dx.doi.org/10.5281/zenodo.15103129.

SIKORA, Maciej; Eva KLIMENTOVÁ; Dawid UCHAL; Denisa ŠRÁMKOVÁ; Agata P PERLINSKA; Mai Lan NGUYEN; Marta KORPACZ; Roksana MALINOWSKA; Szymon NOWAKOWSKI; Pawel RUBACH; Petr ŠIMEČEK a Joanna I SULKOWSKA. Knot or not? Identifying unknotted proteins in knotted families with sequence-based Machine Learning model. Protein Science. HOBOKEN: WILEY, 2024, roč. 33, č. 7, s. 1-21. ISSN 0961-8368. Dostupné z: https://dx.doi.org/10.1002/pro.4998.

HEJRET, Václav; Nandan Mysore VARADARAJAN; Eva KLIMENTOVÁ; Katarína GREŠOVÁ; Ilektra-Chara GIASSA; Štěpánka VAŇÁČOVÁ a Panagiotis ALEXIOU. Analysis of chimeric reads characterises the diverse targetome of AGO2-mediated regulation. Scientific Reports. Nature Research, 2023, roč. 13, č. 1, s. 1-9. ISSN 2045-2322. Dostupné z: https://dx.doi.org/10.1038/s41598-023-49757-z.

FULNEČEK, Jaroslav; Eva KLIMENTOVÁ; Albert CAIRO CALZADA; Soňa BUKOVČÁKOVÁ; Panagiotis ALEXIOU; Zbyněk PROKOP a Karel ŘÍHA. The SAP domain of Ku facilitates its efficient loading onto DNA ends. Nucleic Acids Research. Oxford: Oxford University Press, 2023, roč. 51, č. 21, s. 11706-11716. ISSN 0305-1048. Dostupné z: https://dx.doi.org/10.1093/nar/gkad850.

KLIMENTOVÁ, Eva; Václav HEJRET; Katarína GREŠOVÁ; Ilektra-Chara GIASSA a Panagiotis ALEXIOU. miRBind: a Deep Learning method for miRNA binding classification. 2022. ISBN 978-80-7592-127-7.

KLIMENTOVÁ, Eva; Václav HEJRET; Ján KRČMÁŘ; Katarína GREŠOVÁ; Ilektra-Chara GIASSA a Panagiotis ALEXIOU. miRBind: A Deep Learning Method for miRNA Binding Classification. GENES. MDPI, 2022, roč. 13, č. 12, s. 2323-2335. ISSN 2073-4425. Dostupné z: https://dx.doi.org/10.3390/genes13122323.

HEJRET, Václav; Nandan Mysore VARADARAJAN; Eva KLIMENTOVÁ; Ilektra-Chara GIASSA; Štěpánka VAŇÁČOVÁ a Panagiotis ALEXIOU. Noncanonical small RNA chimeras identified by AGO2-CLASH. In 16th Microsymposium on RNA Biology. 2022.

KLIMENTOVÁ, Eva; Jakub POLÁČEK; Petr ŠIMEČEK a Panagiotis ALEXIOU. PENGUINN: Precise Exploration of Nuclear G-Quadruplexes Using Interpretable Neural Networks. Frontiers in Genetics. Lausanne: Frontiers, 2020, roč. 11, OCT, s. 568546-568552. ISSN 1664-8021. Dostupné z: https://dx.doi.org/10.3389/fgene.2020.568546.