Masaryk University

Publication Records

česky | in English

Filter publications

    2009

    1. Combination of mRNA and protein microarray analysis in complex cell profiling
      ŠIMARA, Pavel, Irena KOUTNÁ, Stanislav STEJSKAL, Petr KRONTORÁD, Zdeněk RUČKA, Martina PETERKOVÁ and Michal KOZUBEK. Combination of mRNA and protein microarray analysis in complex cell profiling. Neoplasma. Bratislava, Slovensko: AEPress, s.r.o., 2009, 2/2009, No 56, p. 141-149. ISSN 0028-2685.
      Odborný vědecký článek
      Name in Czech: Kombinace mRNA a proteinové microarray analýzy v komplexním profilování buněk
      Name (in English): Combination of mRNA and protein microarray analysis in complex cell profiling
      RIV/00216224:14330/09:00034277 Article in a journal. Genetics and molecular biology. English. Czech Republic.
      Šimara, Pavel (203 Czech Republic, belonging to the institution) -- Koutná, Irena (203 Czech Republic, guarantor, belonging to the institution) -- Stejskal, Stanislav (203 Czech Republic, belonging to the institution) -- Krontorád, Petr (203 Czech Republic, belonging to the institution) -- Ručka, Zdeněk (203 Czech Republic, belonging to the institution) -- Peterková, Martina (203 Czech Republic, belonging to the institution) -- Kozubek, Michal (203 Czech Republic, belonging to the institution)
      Keywords in English: microarray; cell profiling; protein expression; mRNA expression; HL-60
      International impact: yes
      Reviewed: yes
      Changed by: Mgr. Pavel Šimara, Ph.D., učo 67594. Changed: 2/3/2018 09:49.
      More: https://is.muni.cz/publication/798695/en
    2. MSMAD: a computationally efficient method for the analysis of noisy array CGH data
      BUDINSKÁ, Eva, Eva GELNAROVÁ and Michael G. SCHIMEK. MSMAD: a computationally efficient method for the analysis of noisy array CGH data. Bioinformatics. Oxford University Press, 2009, vol. 25, No 6, p. 703-713. ISSN 1367-4803.
      URL
      Name in Czech: MSMAD: výpočetně efektivní metoda pro analýzu dat arrayCGH
      RIV/00216224:14110/09:00035237 Article in a journal. Genetics and molecular biology. English. United Kingdom of Great Britain and Northern Ireland.
      Budinská, Eva (703 Slovakia, guarantor) -- Gelnarová, Eva (203 Czech Republic) -- Schimek, Michael G. (40 Austria)
      Keywords in English: MSMAD; microarray; arrayCGH; median absolute deviation; median smoothing
      International impact: yes
      Reviewed: yes
      Changed by: Mgr. Eva Budinská, Ph.D., učo 40822. Changed: 19/3/2009 14:17.
      More: https://is.muni.cz/publication/825041/en

    2008

    1. The Use of RNA Polymerase II in Epigenetic Analysis
      STEJSKAL, Stanislav, Pavel MATULA, Irena KOUTNÁ, Ondřej DANĚK, Martin MAŠKA and Michal KOZUBEK. The Use of RNA Polymerase II in Epigenetic Analysis. In 3rd EFS Functional Genomics Conference 2008. 2008.
      Name in Czech: Použití RNA Polymerasy II v epigenetické analýze
      Genetics and molecular biology. English. Austria.
      Keywords in English: RNA Polymerase II; granulopoiesis; ImmunoFISH;microarray;image analysis
      Type of participation: active participation (giving a lecture, organization, etc.)
      International impact: yes
      Changed by: Mgr. Stanislav Stejskal, Ph.D., učo 67623. Changed: 18/12/2008 13:22.
      More: https://is.muni.cz/publication/799904/en

    2007

    1. DNA microarray analysis of locally advanced rectal adenocarcinomas: prediction of sensitivity to neoadjuvant chemoradiotherapy (DNA microarray analysis of locally advanced rectal adenocarcinomas: prediction of sensitivity to neoadjuvant chemoradiotherapy.)
      GARAJOVÁ, Ingrid, Marek SVOBODA, Ondřej SLABÝ, Eva KREJČÍ, Ilona KOCÁKOVÁ, Markéta BEDNAŘÍKOVÁ, Roman ŠEFR and Rostislav VYZULA. DNA microarray analysis of locally advanced rectal adenocarcinomas: prediction of sensitivity to neoadjuvant chemoradiotherapy (DNA microarray analysis of locally advanced rectal adenocarcinomas: prediction of sensitivity to neoadjuvant chemoradiotherapy.). In III. dny diagnostické, prediktivní a experimentální onkologie. Sborník příspěvků. 2007th ed. Olomouc: Solen, 2007, p. 24-24. ISBN 978-80-244-1824-7.
      Name in Czech: DNA-čipová analýza lokálne pokročilých adenokarcinomů rekta:predikce senzitivity k neoadjuvatní chemoradioterapii
      Name (in English): DNA microarray analysis of locally advanced rectal adenocarcinomas: prediction of sensitivity to neoadjuvant chemoradiotherapy.
      Oncology and haematology. English. Czech Republic.
      Keywords in English: microarray;rectal adenocarcinoma;neoadjuvant therapy
      Type of proceedings: pre-proceedings
      Reviewed: yes
      Changed by: prof. MUDr. Marek Svoboda, Ph.D., učo 19402. Changed: 19/12/2007 01:38.
      More: https://is.muni.cz/publication/746235/en
    2. The AtGenExpress global stress expression data set: protocols, evaluation and model data analysis of UV-B light, drought and cold stress responses
      KILIAN, Joachim, Dion WHITEHEAD, Jakub HORÁK, Dierk WANKE, Stefan WEINL, Oliver BATISTIC, Cecilia D´ANGELO, Erich BORNBERG-BAUER, Jörg KUDLA and Klaus HARTER. The AtGenExpress global stress expression data set: protocols, evaluation and model data analysis of UV-B light, drought and cold stress responses. The Plant Journal. England: BLACKWELL PUBLISHING, 2007, vol. 50, No 2, p. 347-363. ISSN 0960-7412.
      URL
      RIV/00216224:14310/07:00035260 Article in a journal. Genetics and molecular biology. English. United States of America.
      Kilian, Joachim (276 Germany) -- Whitehead, Dion (826 United Kingdom of Great Britain and Northern Ireland) -- Horák, Jakub (203 Czech Republic, guarantor) -- Wanke, Dierk (276 Germany) -- Weinl, Stefan (276 Germany) -- Batistic, Oliver (276 Germany) -- D´Angelo, Cecilia (380 Italy) -- Bornberg-Bauer, Erich (276 Germany) -- Kudla, Jörg (276 Germany) -- Harter, Klaus (276 Germany)
      Keywords in English: AtGenExpress; bioinformatics; gene expression; microarray; abiotic stress
      International impact: yes
      Reviewed: yes
      Changed by: Mgr. Jakub Horák, Dr. rer. nat., učo 21777. Changed: 12/4/2010 08:43.
      More: https://is.muni.cz/publication/825602/en
    3. TransMap Viewer (software)
      STREHOVSKÝ, Michal, Irena KRONTORÁD KOUTNÁ and Petr KRONTORÁD. TransMap Viewer. 2007.
      URL
      Name in Czech: TransMap Viewer
      RIV: Software. Use of computers, robotics and its application. English. Czech Republic.
      Strehovský, Michal (703 Slovakia, guarantor, belonging to the institution) -- Krontorád Koutná, Irena (203 Czech Republic) -- Krontorád, Petr (203 Czech Republic)
      Keywords in English: microarray; transcription density map
      International impact: yes
      Changed by: RNDr. Pavel Šmerk, Ph.D., učo 3880. Changed: 31/3/2015 14:11.
      More: https://is.muni.cz/publication/756029/en

    2006

    1. A comparative study of false discovery rate procedures in R
      SCHIMEK, Michael and Tomáš PAVLÍK. A comparative study of false discovery rate procedures in R. In Proceedings of the 21th International Workshop on Statistical Modelling. Galway, Ireland, 3-7 July 2006. 21st ed. Galway, Ireland: Statistical Modelling Society, 2006, p. 466-473. ISBN 1-86220-180-3.
      Name in Czech: Srovnávací studie FDR procedur v jazyce R
      Name (in English): A comparative study of false discovery rate procedures in R
      Applied statistics, operational research. English. Ireland.
      Keywords in English: Correlation; Error control; False Discovery Rate; Microarray
      Type of proceedings: pre-proceedings
      International impact: yes
      Reviewed: yes
      Changed by: RNDr. Tomáš Pavlík, Ph.D., učo 52483. Changed: 1/4/2010 09:20.
      More: https://is.muni.cz/publication/707741/en
    2. Historický přehled vzniku molekulární psychiatrie (Historic overview of establishment of molecular psychiatry)
      ŠERÝ, Omar and Petr ZVOLSKÝ. Historický přehled vzniku molekulární psychiatrie (Historic overview of establishment of molecular psychiatry). Česká a slovenská psychiatrie. Praha: ČLS J.E. Purkyně, 2006, vol. 102, No 5, p. 246-249. ISSN 1212-0383.
      Name in Czech: Historický přehled vzniku molekulární psychiatrie
      Name (in English): Historic overview of establishment of molecular psychiatry
      RIV/00216224:14310/06:00016681 Article in a journal. Neurology, neuro-surgery, nuero-sciences. Czech. Czech Republic.
      Šerý, Omar (203 Czech Republic, guarantor) -- Zvolský, Petr (203 Czech Republic)
      Keywords in English: molecular psychiatry; history; psychopharmacology; genetics; PCR; DNA; genome; microarray; Cajal; Gall; Mendel
      International impact: yes
      Reviewed: yes
      Changed by: prof. RNDr. Omar Šerý, Ph.D., učo 18120. Changed: 13/2/2008 17:31.
      More: https://is.muni.cz/publication/631412/en
    3. Odběr a zpracování vzorků pro expresní DNA čipy (Sample taking and processing for expression DNA microarrays)
      TICHÝ, Boris, M. SVOBODA, Jiří MAYER and Šárka POSPÍŠILOVÁ. Odběr a zpracování vzorků pro expresní DNA čipy (Sample taking and processing for expression DNA microarrays). Klinická onkologie. 2006, vol. 19, suppl, p. 346-350. ISSN 1802-5307.
      Name (in English): Sample taking and processing for expression DNA microarrays
      RIV/00216224:14310/06:00028311 Article in a journal. Oncology and haematology. Czech. Czech Republic.
      Tichý, Boris (203 Czech Republic, guarantor) -- Svoboda, M. (203 Czech Republic) -- Mayer, Jiří (203 Czech Republic) -- Pospíšilová, Šárka (203 Czech Republic)
      Keywords in English: RNA; microarray; biopsy; gene expression
      Reviewed: yes
      Changed by: RNDr. Jitka Malčíková, Ph.D., učo 14364. Changed: 26/7/2010 13:49.
      More: https://is.muni.cz/publication/838177/en

    2005

    1. A Method for Detecting Breakpoints in Array CGH data
      BUDINSKÁ, Eva and Eva GELNAROVÁ. A Method for Detecting Breakpoints in Array CGH data. In EnviroInfo Brno 2005. Networking Environmental Information. Part 2. Proceedings of the 19th International Conference Informatics for Environmental Protection. Brno: Masaryk University in Brno, 2005, p. 673 - 676. ISBN 80-210-3780-6.
      Name in Czech: Metoda detekce bodů zlomu u array CGH dat
      Name (in English): A Method for Detecting Breakpoints in Array CGH data
      Applied statistics, operational research. English. Czech Republic.
      Keywords in English: array CGH; breakpoint detection; analysis; microarray
      Changed by: RNDr. Eva Gelnarová, učo 133275. Changed: 28/4/2006 19:26.
      More: https://is.muni.cz/publication/583202/en
    2. cDNA Microarray Technology as a Tool for Better Understanding of Progress of Malignant Diseases
      KOUTNÁ, Irena, Eva JANSOVÁ, Petr KRONTORÁD, Zbyněk SVOBODA, Michal KOZUBEK and Stanislav KOZUBEK. cDNA Microarray Technology as a Tool for Better Understanding of Progress of Malignant Diseases. In Prague Post Genome Technology Workshop. Prague, Czech Republic: Czech Pattern Recognition Society, 2005, p. 69-72. ISBN 80-01-03239-6.
      Name in Czech: cDNA microarray technologie jako nástroj k lepšímu pochopení progrese maligních onemocnění
      RIV/00216224:14330/05:00013836 Proceedings paper. Genetics and molecular biology. English. Czech Republic.
      Koutná, Irena (203 Czech Republic) -- Jansová, Eva (203 Czech Republic) -- Krontorád, Petr (203 Czech Republic) -- Svoboda, Zbyněk (203 Czech Republic) -- Kozubek, Michal (203 Czech Republic, guarantor) -- Kozubek, Stanislav (203 Czech Republic)
      Keywords in English: microarray
      International impact: yes
      Reviewed: yes
      Changed by: prof. RNDr. Michal Kozubek, Ph.D., učo 3740. Changed: 7/5/2010 09:29.
      More: https://is.muni.cz/publication/573507/en
    3. Projekt EMIL (Effective Microarray IntelLigence): přínos metod umělé inteligence pro analýzu microarrays (Project EMIL (Effective Microarray IntelLigence): benefits of artificial intelligence methods for microarray analysis)
      LIDMAN, Petr, Zdenko STANÍČEK, Filip PROCHÁZKA, Eva BUDINSKÁ, Jiří JARKOVSKÝ and Ladislav DUŠEK. Projekt EMIL (Effective Microarray IntelLigence): přínos metod umělé inteligence pro analýzu microarrays (Project EMIL (Effective Microarray IntelLigence): benefits of artificial intelligence methods for microarray analysis). In Sborník abstraktů konference se zahraniční účastí. Analytická cytometrie III. Brno: Česká společnost pro analytickou cytologii, 2005, p. 107-108. ISBN 80-239-5155-6.
      Name (in English): Project EMIL (Effective Microarray IntelLigence): benefits of artificial intelligence methods for microarray analysis
      RIV/00216224:14330/05:00013455 Proceedings paper. Informatics. Czech. Czech Republic.
      Lidman, Petr (203 Czech Republic) -- Staníček, Zdenko (203 Czech Republic) -- Procházka, Filip (203 Czech Republic) -- Budinská, Eva (703 Slovakia) -- Jarkovský, Jiří (203 Czech Republic) -- Dušek, Ladislav (203 Czech Republic, guarantor)
      Keywords in English: microarray; microarrays; artificial intelligence; uiron; oncology; machine learning; intelligent assistant
      Changed by: Mgr. Petr Lidman, učo 3619. Changed: 6/2/2006 18:00.
      More: https://is.muni.cz/publication/622364/en
    4. Projekt UIRON ("Universal information robot in oncology"): přínos metod umělé inteligence v biomedicíně a klinické praxi (Project UIRON ("Universal information robot in oncology"): benefits of artificial intelligence methods in biomedicine & clinical practice)
      LIDMAN, Petr, Zdenko STANÍČEK, Filip PROCHÁZKA, Jan MUŽÍK, Ladislav DUŠEK, Rostislav VYZULA and Pavel ANDRES. Projekt UIRON ("Universal information robot in oncology"): přínos metod umělé inteligence v biomedicíně a klinické praxi (Project UIRON ("Universal information robot in oncology"): benefits of artificial intelligence methods in biomedicine & clinical practice). In Vybrané otázky onkologie IX. Praha: Galén, 2005, p. 143-144. ISBN 80-7262-382-6.
      Name (in English): Project UIRON ("Universal information robot in oncology"): benefits of artificial intelligence methods in biomedicine & clinical practice
      RIV/00216224:14330/05:00013457 Proceedings paper. Informatics. Czech. Czech Republic.
      Lidman, Petr (203 Czech Republic) -- Staníček, Zdenko (203 Czech Republic) -- Procházka, Filip (203 Czech Republic) -- Mužík, Jan (203 Czech Republic) -- Dušek, Ladislav (203 Czech Republic, guarantor) -- Vyzula, Rostislav (203 Czech Republic) -- Andres, Pavel (203 Czech Republic)
      Keywords in English: biomedicine; epidemiology; national cancer register; microarray; microarrays; artificial intelligence; uiron; oncology; machine learning; intelligent assistant; business rules engine
      Changed by: Mgr. Petr Lidman, učo 3619. Changed: 6/2/2006 18:39.
      More: https://is.muni.cz/publication/622452/en
    5. Rule-based systems: employing intelligent computer assistant in biomedicine & clinical practice
      LIDMAN, Petr, Zdenko STANÍČEK, Filip PROCHÁZKA, Ladislav DUŠEK, Jiří JARKOVSKÝ and Eva BUDINSKÁ. Rule-based systems: employing intelligent computer assistant in biomedicine & clinical practice. In Proceedings of 1st International Summer School on Computational Biology. Brno: Masarykova univerzita, 2005, p. 100-104. ISBN 80-210-3907-8.
      Name in Czech: Pravidlové systémy: využití inteligentního počítačového asistenta v biomedicíně a klinické praxi
      RIV/00216224:14330/05:00013456 Proceedings paper. Informatics. English. Czech Republic.
      Lidman, Petr (203 Czech Republic) -- Staníček, Zdenko (203 Czech Republic) -- Procházka, Filip (203 Czech Republic) -- Dušek, Ladislav (203 Czech Republic, guarantor) -- Jarkovský, Jiří (203 Czech Republic) -- Budinská, Eva (703 Slovakia)
      Keywords in English: biomedicine; epidemiology; national cancer register; microarray; microarrays; artificial intelligence; uiron; oncology; machine learning; intelligent assistant; business rules engine
      Changed by: Mgr. Petr Lidman, učo 3619. Changed: 6/2/2006 18:42.
      More: https://is.muni.cz/publication/622447/en
    6. Treponema Genomics.
      WEINSTOCK, George M., David ŠMAJS, Petra MATĚJKOVÁ, Michal STROUHAL, Thomas J. ALBERT, Steven J. NORRIS, Timothy PALZKILL and Erica J. SODERGREN. Treponema Genomics. In Molecular Biology of Spirochetes. Praha: Státní zdravotní ústav., 2005, p. 96-100. Volume 373 NATO Science Series. ISBN 1-58603-665-3.
      Name in Czech: Genomika treponem.
      Genetics and molecular biology. English. Czech Republic.
      Keywords in English: DNA sequence; comparative genomics; syphilis; yaws; microarray
      Changed by: Mgr. Petra Pospíšilová, Ph.D., učo 12972. Changed: 26/6/2009 16:28.
      More: https://is.muni.cz/publication/704220/en
Displayed: 1/5/2024 14:35