VSAG021 Modern technologies for genome analysis

Faculty of Medicine
autumn 2018
Extent and Intensity
1/0. 2 credit(s). Type of Completion: z (credit).
Teacher(s)
Mgr. Vojtěch Bystrý, Ph.D. (lecturer)
Mgr. Veronika Mančíková, Ph.D. (lecturer)
prof. MUDr. Mgr. Marek Mráz, Ph.D. (lecturer)
Mgr. Veronika Navrkalová, Ph.D. (lecturer)
Mgr. Lenka Radová, Ph.D. (lecturer)
MVDr. Boris Tichý, Ph.D. (lecturer)
Mgr. Nikola Tom, Ph.D. (lecturer)
Guaranteed by
prof. RNDr. Šárka Pospíšilová, Ph.D.
Department of Internal Medicine - Hematology and Oncology – Joint workplaces with the University Hospital Brno - workplaces of the Bohunice and Mater. Hospital – Faculty of Medicine
Supplier department: Department of Internal Medicine - Hematology and Oncology – Joint workplaces with the University Hospital Brno - workplaces of the Bohunice and Mater. Hospital – Faculty of Medicine
Course Enrolment Limitations
The course is offered to students of any study field.
The capacity limit for the course is 10 student(s).
Current registration and enrolment status: enrolled: 0/10, only registered: 0/10, only registered with preference (fields directly associated with the programme): 0/10
Abstract
At the end of the course students should get familiar with the modern molecular-biology techniques and explain the principles of next generation sequencing technologies
Learning outcomes
After taking the course, student will be able to: - apply CRISPR technology in his research - describe the principle of next generation sequencing (NGS) - design NGS experiment - analyze NGS data
Key topics
1. CRISPR - principles and application 2. Next generation sequencing (NGS) – technological aspects of different NGS platforms 3. Library preparation for NGS 4. Methods for non-coding RNA analysis – miRNA, lncRNA, examples of applications in oncology 5. Data analysis – bioinformatics and statistics 6. Applications and experiment design
Study resources and literature
  • Koubková L, Vojtěšek B, Vyzula R. Next generation sequencing -  application in clinical practice. Klin Onkol. 2014;27 Suppl 1:S61-8.
Approaches, practices, and methods used in teaching
Lectures.
Method of verifying learning outcomes and course completion requirements
written test
Language of instruction
Czech
Further Comments
Study Materials
The course is taught annually.
The course is taught every week.
The course is also listed under the following terms Spring 2011, Spring 2013, Spring 2014, Spring 2015, Autumn 2015, Autumn 2016, Autumn 2017, autumn 2019, autumn 2020, autumn 2021, autumn 2022, autumn 2023, autumn 2024, autumn 2025, autumn 2026.
  • Enrolment Statistics (autumn 2018, recent)
  • Permalink: https://is.muni.cz/course/med/autumn2018/VSAG021