PřF:Bi6700 Taxonomy of prokaryotes - Course Information
Bi6700 Taxonomy of prokaryotesFaculty of Science
- Extent and Intensity
- 3/0/0. 3 credit(s) (fasci plus compl plus > 4). Type of Completion: zk (examination).
- doc. RNDr. Ivo Sedláček, CSc. (lecturer)
- doc. RNDr. Ivo Sedláček, CSc.
Department of Experimental Biology - Biology Section - Faculty of Science
Contact Person: doc. RNDr. Ivo Sedláček, CSc.
Supplier department: Department of Experimental Biology - Biology Section - Faculty of Science
- Mon 17. 9. to Fri 14. 12. Tue 14:00–16:50 A25-209
- C3580 Biochemistry && Bi4020 Molecular biology && Bi4090 General microbiology
Examination - basic microbiology, biochemistry, basic molecular biology.
- Course Enrolment Limitations
- The course is also offered to the students of the fields other than those the course is directly associated with.
- Fields of study the course is directly associated with
- there are 6 fields of study the course is directly associated with, display
- Course objectives
- At the end of this course, students should be able to identify prokaryotes (domains Archaea and Bacteria) based on their phylogenetic position. Owing to learned knowledge the course holder is able to use obtained information in bacterial taxonomy and independently interpret acquired data for both typing of bacterial isolates and for identification of unknown samples of prokaryotic microorganisms.
- Bacterial taxonomy summarises a phylogenetic position of prokaryotic microorganisms (domains Archaea and Bacteria) and defines a concept of systematics (one lecture). Members of domain Archaea are mentioned only in basic features of families and genera (one lecture). The main attention is aimed to representatives of domain Bacteria which are divided in this course into several parts. The first part contains taxonomy of different classes of phylum Proteobacteria (fifth lecture). The second part includes other phyla of Gram negative cocci and rods - aerobic, facultative anaerobic and obligate anaerobic; regular or irregular (three lectures). The last part of lecture is aimed to Gram positive bacteria (phylum Actinobacteria and Firmicutes) - morphologically different prokaryotae, such as mycobacteria, nocardioform or mycelium forming bacteria and sporeforming bacteria (four lectures). At the end of this course, students should be able to apply a obtained phenotype and phylogenetic data for classification of microorganisms or for typing of microorganisms. They could understand a similarity or relationships among species and would be able to explain to intra- or inter-species relationships.
- SEDLÁČEK, Ivo. Taxonomie prokaryot (Taxonomy of prokaryotes). 1. vyd. Brno: Masarykova univerzita, 2007. 270 pp. 55-969C-2006 02/58 12Př. ISBN 80-210-4207-9. info
- Euzéby, J.P. 2007. List of prokaryotic names with standing in nomenclature. On-line: http://www.bacterio.cict.fr
- Garrity, G.M., Boone, D.R., Castenholz, R.W. (eds.). 2001. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume One. The Archaea and the Deeply Branching and Phototrophic Bacteria. Springer, USA.
- Garrity, G.M., Brenner, D.J., Krieg, N.R., Staley, J.T. (eds.). 2005a. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume Two. The Proteobacteria. Part A Introductory Essays. Springer, USA.
- Garrity, G.M., Brenner, D.J., Krieg, N.R., Staley, J.T. (eds.). 2005b. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume Two. The Proteobacteria. Part B The Gammaproteobacteria. Springer, USA.
- Garrity, G.M., Brenner, D.J., Krieg, N.R., Staley, J.T. (eds.). 2005c. Bergey’s Manual of Systematic Bacteriology. Second edition. Volume Two. The Proteobacteria. Part C The Alpha-, Beta-, Delta-,and Epsilonproteobacteria. Springer, USA.
- Balows, A., Trüper, H.G., Dworkin, M., Harder, W., Schleifer, K.-H. (eds.). 1992. The Prokaryotes: A Handbook on the biology of bacteria: ecophysiology, isolation, identification, applications. 2nd ed. New York: Springer-Verlag.
- Stackebrandt, E. (Ed.) 2006. Molecular Identification, Systematics, and Population Structure of Prokaryotes. Springer, Germany.
- Priest, F.G., Goodfellow, M. (eds.). 2000. Applied microbial systematics. Kluwer Academic Publisher, Dordrecht, The Netherlands.
- Goodfellow M. and O Donnell A.G. : Chemical methods in pracarytic systematics., J.Wilea and sons., N.Y., 1994
- Teaching methods
- Assessment methods
- Discussion in the beginning of each lecture during course, 2 written tests before laboratory course (30 and 50 questions), final oral examination.
- Language of instruction
- Follow-Up Courses
- Further comments (probably available only in Czech)
- The course is taught annually.
Information on course enrolment limitations: Limitujici je kapacita cvicebny
- Listed among pre-requisites of other courses
- Enrolment Statistics (recent)
- Permalink: https://is.muni.cz/course/sci/autumn2018/Bi6700