Effect of soil depth on the structure of bacterial composition
in the active layer at five geologically distinct sites on
James Ross and Vega Islands in Antarctica

J 2024

Effect of soil depth on the structure of bacterial composition in the active layer at five geologically distinct sites on James Ross and Vega Islands in Antarctica

KOSEČKOVÁ MICENKOVÁ, Lenka; Ivo SEDLÁČEK; Filip HRBÁČEK; Pavel ŠVEC; Daniel NÝVLT et al.

Základní údaje

Originální název

Effect of soil depth on the structure of bacterial composition in the active layer at five geologically distinct sites on James Ross and Vega Islands in Antarctica

Autoři

KOSEČKOVÁ MICENKOVÁ, Lenka; Ivo SEDLÁČEK; Filip HRBÁČEK; Pavel ŠVEC; Daniel NÝVLT; Roman PANTŮČEK a Ivana MAŠLAŇOVÁ

Vydání

Polar Biology, Springer-Verlag GmbH, 2024, 0722-4060

Další údaje

Jazyk

angličtina

Typ výsledku

Článek v odborném periodiku

Obor

10606 Microbiology

Stát vydavatele

Německo

Utajení

není předmětem státního či obchodního tajemství

Odkazy

URL

Impakt faktor

Impact factor: 1.600

Označené pro přenos do RIV

Ano

Kód RIV

RIV/00216224:14310/24:00135634

Organizační jednotka

Přírodovědecká fakulta

Klíčová slova anglicky

Antarctica; Active layer; James Ross Island; Vega Island; Microbiome Geology

Štítky

14314010, 14315030, 143180, rivok

Příznaky

Mezinárodní význam, Recenzováno

Změněno: 26. 2. 2025 10:42, Mgr. Marie Novosadová Šípková, DiS.

Anotace

V originále

Microbial communities in the active layer play a crucial role in the biogeochemical cycles of Antarctic pristine ecosystems. Here, 16S rRNA gene sequencing was used to investigate bacterial communities in active layer of five different geological sites related to the compositional variation of the geological bedrock, including Neogene volcanic or Cretaceous rocks and or marine sediments areas of distinct elevation. Local variations in the thickness of the active layer (50–80 cm) were observed on the Ulu Peninsula, James Ross Island, and the southwest coast of Vega Island, Antarctica during sampling in 2019. High bacterial diversity was detected in all sampling sites. Significant site effects on bacterial composition with increased Chloroflexota and decreased Flavobacteriaceae were only observed between the highest elevation Johnson Mesa 2 plateau and coastal areas. The overall effect of the depth was reflected by the increased of e.g., Cyanobacteria, Propionibacterium, Staphylococcus in the upper surface and Chloroflexota, Acidobacteriota, Actinomycetota at depths below 30 cm. The huge number of unassigned bacteria indicated a potential source of new bacterial species and their ecological role in this extreme environment. For the first time, we showed that the effect of depth on bacterial composition was more significant than the effect of geological bedrock from these previously unexplored regions.

Návaznosti

GM22-28659M, projekt VaV

Název: Vliv změny klimatu na dynamiku periglaciálního prostředí v oblasti Antarktického poloostrova

Investor: Grantová agentura ČR, Dynamics of the periglacial environment in the Antarctic Peninsula region under ongoing climate change.

LM2015078, projekt VaV

Název: Česká polární výzkumná infrastruktura (Akronym: CzechPolar2)

Investor: Ministerstvo školství, mládeže a tělovýchovy ČR, Czech Polar Research Infrastructure

LX22NPO5103, projekt VaV

Název: Národní institut virologie a bakteriologie (Akronym: NIVB)

Investor: Ministerstvo školství, mládeže a tělovýchovy ČR, Národní institut virologie a bakteriologie, 5.1 EXCELES

90269, velká výzkumná infrastruktura

Název: RECETOX RI II

Přiložené soubory

2382857.pdf

s00300-024-03230-3.pdf

Citovat

KOSEČKOVÁ MICENKOVÁ, Lenka; Ivo SEDLÁČEK; Filip HRBÁČEK; Pavel ŠVEC; Daniel NÝVLT; Roman PANTŮČEK a Ivana MAŠLAŇOVÁ. Effect of soil depth on the structure of bacterial composition in the active layer at five geologically distinct sites on James Ross and Vega Islands in Antarctica. Polar Biology. Springer-Verlag GmbH, 2024, roč. 47, č. 3, s. 295-303. ISSN 0722-4060. Dostupné z: https://doi.org/10.1007/s00300-024-03230-3.

@article{2382857,
   author = {Kosečková Micenková, Lenka and Sedláček, Ivo and Hrbáček, Filip and Švec, Pavel and Nývlt, Daniel and Pantůček, Roman and Mašlaňová, Ivana},
   article_number = {3},
   doi = {https://doi.org/10.1007/s00300-024-03230-3},
   keywords = {Antarctica; Active layer; James Ross Island; Vega Island; Microbiome Geology},
   language = {eng},
   issn = {0722-4060},
   journal = {Polar Biology},
   title = {Effect of soil depth on the structure of bacterial composition in the active layer at five geologically distinct sites on James Ross and Vega Islands in Antarctica},
   url = {https://link.springer.com/article/10.1007/s00300-024-03230-3},
   volume = {47},
   year = {2024}
}

TY  - JOUR
ID  - 2382857
AU  - Kosečková Micenková, Lenka - Sedláček, Ivo - Hrbáček, Filip - Švec, Pavel - Nývlt, Daniel - Pantůček, Roman - Mašlaňová, Ivana
PY  - 2024
TI  - Effect of soil depth on the structure of bacterial composition in the active layer at five geologically distinct sites on James Ross and Vega Islands in Antarctica
JF  - Polar Biology
VL  - 47
IS  - 3
SP  - 295-303
EP  - 295-303
PB  - Springer-Verlag GmbH
SN  - 07224060
KW  - Antarctica
KW  - Active layer
KW  - James Ross Island
KW  - Vega Island
KW  - Microbiome Geology
UR  - https://link.springer.com/article/10.1007/s00300-024-03230-3
N2  - Microbial communities in the active layer play a crucial role in the biogeochemical cycles of Antarctic pristine ecosystems. Here, 16S rRNA gene sequencing was used to investigate bacterial communities in active layer of five different geological sites related to the compositional variation of the geological bedrock, including Neogene volcanic or Cretaceous rocks and or marine sediments areas of distinct elevation. Local variations in the thickness of the active layer (50–80 cm) were observed on the Ulu Peninsula, James Ross Island, and the southwest coast of Vega Island, Antarctica during sampling in 2019. High bacterial diversity was detected in all sampling sites. Significant site effects on bacterial composition with increased Chloroflexota and decreased Flavobacteriaceae were only observed between the highest elevation Johnson Mesa 2 plateau and coastal areas. The overall effect of the depth was reflected by the increased of e.g., Cyanobacteria, Propionibacterium, Staphylococcus in the upper surface and Chloroflexota, Acidobacteriota, Actinomycetota at depths below 30 cm. The huge number of unassigned bacteria indicated a potential source of new bacterial species and their ecological role in this extreme environment. For the first time, we showed that the effect of depth on bacterial composition was more significant than the effect of geological bedrock from these previously unexplored regions.
ER  -

KOSEČKOVÁ MICENKOVÁ, Lenka; Ivo SEDLÁČEK; Filip HRBÁČEK; Pavel ŠVEC; Daniel NÝVLT; Roman PANTŮČEK a Ivana MAŠLAŇOVÁ. Effect of soil depth on the structure of bacterial composition in the active layer at five geologically distinct sites on James Ross and Vega Islands in Antarctica. \textit{Polar Biology}. Springer-Verlag GmbH, 2024, roč.~47, č.~3, s.~295-303. ISSN~0722-4060. Dostupné z: https://doi.org/10.1007/s00300-024-03230-3.

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