Cloning, expression and preliminary characterization of novel
haloalkane dehalogenase DhmA from Mycobacterium avium N85

J 2002

Cloning, expression and preliminary characterization of novel haloalkane dehalogenase DhmA from Mycobacterium avium N85

JESENSKÁ, Andrea; Milan BARTOŠ; Vladimíra CZERNEKOVÁ; Ivan RYCHLÍK; Ivo PAVLÍK et al.

Základní údaje

Originální název

Cloning, expression and preliminary characterization of novel haloalkane dehalogenase DhmA from Mycobacterium avium N85

Autoři

JESENSKÁ, Andrea; Milan BARTOŠ; Vladimíra CZERNEKOVÁ; Ivan RYCHLÍK; Ivo PAVLÍK a Jiří DAMBORSKÝ

Vydání

Applied and Environmental Microbiology, 2002, 1098-5336

Další údaje

Jazyk

angličtina

Typ výsledku

Článek v odborném periodiku

Obor

10600 1.6 Biological sciences

Stát vydavatele

Spojené státy

Utajení

není předmětem státního či obchodního tajemství

Odkazy

URL

Označené pro přenos do RIV

Ano

Kód RIV

RIV/00216224:14310/02:00006277

Organizační jednotka

Přírodovědecká fakulta

UT WoS

000177260500008

Klíčová slova anglicky

HALOALKANE DEHALOGENASE; MYCOBACTERIUM; DHMA; BIODEGRADATION; HALOGENATED COMPOUNDS

Štítky

biodegradation, DHMA, haloalkane dehalogenase, Halogenated Compounds, MYCOBACTERIUM

Změněno: 22. 3. 2010 17:01, prof. Mgr. Jiří Damborský, Dr.

Anotace

V originále

Haloalkane dehalogenases are microbial enzymes catalyzing the cleavage of carbon-halogen bond by a hydrolytic mechanism. Until recently, these enzymes have only been isolated from bacteria living in contaminated environments. This report describes the cloning of dehalogenase gene gene dhmA from Mycobacterium avium subsp. avium N85 isolated from swines mesenteric lymph node. The dhmA gene has G+C content 68.21 % and codes for a polypeptide 301 amino acids long with calculated molecular mass of 34.7 kDa. The molecular mass of DhmA determined by SDS electrophoresis and gel permeation chromatography is 34.0 and 35.4 kDa, respectively. Many residues essential for dehalogenation reaction are conserved in DhmA, i.e. the putative catalytic triad consists of Asp123, His279 and Asp250; the putative oxyanion hole is made of Glu55 and Trp124. Trp124 should be involved in substrate binding and product (halide) stabilization while the second halide stabilising residue cannot be identified from comparison of DhmA sequence with the sequences of three dehalogenases with known tertiary structure. The haloalkane dehalogenase DhmA shows broad substrate specificity and good activity with priority pollutant 1,2-dichloroethane. Also, DhmA has significantly lower stability compared to other currently known haloalkane dehalogenases. This study confirms the presence of hydrolytic dehalogenase in facultative pathogen M. avium. The presence of dehalogenase-like genes in the genomes of other mycobacteria, including obligatory pathogens Mycobacterium tuberculosis and Mycobacterium bovis, as well as in other bacterial species like Mesorhizobium loti, Xylella fastidiosa, Photobacterium profundum and Caulobacter crescentus, let us speculate that haloalkane dehalogenase have some other function besides catalysis of hydrolytic dehalogenation of halogenated substances.

Návaznosti

LN00A016, projekt VaV

Název: BIOMOLEKULÁRNÍ CENTRUM

Investor: Ministerstvo školství, mládeže a tělovýchovy ČR, Biomolekulární centrum

Citovat

JESENSKÁ, Andrea; Milan BARTOŠ; Vladimíra CZERNEKOVÁ; Ivan RYCHLÍK; Ivo PAVLÍK a Jiří DAMBORSKÝ. Cloning, expression and preliminary characterization of novel haloalkane dehalogenase DhmA from Mycobacterium avium N85. Applied and Environmental Microbiology. 2002, roč. 68, č. 8, s. 3724-7453. ISSN 1098-5336.

@article{404664,
   author = {Jesenská, Andrea and Bartoš, Milan and Czerneková, Vladimíra and Rychlík, Ivan and Pavlík, Ivo and Damborský, Jiří},
   article_number = {8},
   keywords = {HALOALKANE DEHALOGENASE; MYCOBACTERIUM; DHMA; BIODEGRADATION; HALOGENATED COMPOUNDS},
   language = {eng},
   issn = {1098-5336},
   journal = {Applied and Environmental Microbiology},
   title = {Cloning, expression and preliminary characterization of novel haloalkane dehalogenase DhmA from Mycobacterium avium N85},
   url = {http://ncbr.chemi.muni.cz/~jiri/ABSTRACTS/aem02b.html},
   volume = {68},
   year = {2002}
}

TY  - JOUR
ID  - 404664
AU  - Jesenská, Andrea - Bartoš, Milan - Czerneková, Vladimíra - Rychlík, Ivan - Pavlík, Ivo - Damborský, Jiří
PY  - 2002
TI  - Cloning, expression and preliminary characterization of novel haloalkane dehalogenase DhmA from Mycobacterium avium N85
JF  - Applied and Environmental Microbiology
VL  - 68
IS  - 8
SP  - 3724
EP  - 3724
SN  - 10985336
KW  - HALOALKANE DEHALOGENASE
KW  - MYCOBACTERIUM
KW  - DHMA
KW  - BIODEGRADATION
KW  - HALOGENATED COMPOUNDS
UR  - http://ncbr.chemi.muni.cz/~jiri/ABSTRACTS/aem02b.html
N2  - Haloalkane dehalogenases are microbial enzymes catalyzing the cleavage of carbon-halogen bond by a hydrolytic mechanism. Until recently, these enzymes have only been isolated from bacteria living in contaminated environments. This report describes the cloning of dehalogenase gene gene dhmA from Mycobacterium avium subsp. avium N85 isolated from swines mesenteric lymph node. The dhmA gene has G+C content 68.21 % and codes for a polypeptide 301 amino acids long with calculated molecular mass of 34.7 kDa. The molecular mass of DhmA determined by SDS electrophoresis and gel permeation chromatography is 34.0 and 35.4 kDa, respectively. Many residues essential for dehalogenation reaction are conserved in DhmA, i.e. the putative catalytic triad consists of Asp123, His279 and Asp250; the putative oxyanion hole is made of Glu55 and Trp124. Trp124 should be involved in substrate binding and product (halide) stabilization while the second halide stabilising residue cannot be identified from comparison of DhmA sequence with the sequences of three dehalogenases with known tertiary structure. The haloalkane dehalogenase DhmA shows broad substrate specificity and good activity with priority pollutant 1,2-dichloroethane. Also, DhmA has significantly lower stability compared to other currently known haloalkane dehalogenases. This study confirms the presence of hydrolytic dehalogenase in facultative pathogen M. avium. The presence of dehalogenase-like genes in the genomes of other mycobacteria, including obligatory pathogens Mycobacterium tuberculosis and Mycobacterium bovis, as well as in other bacterial species like Mesorhizobium loti, Xylella fastidiosa, Photobacterium profundum and Caulobacter crescentus, let us speculate that haloalkane dehalogenase have some other function besides catalysis of hydrolytic dehalogenation of halogenated substances.
ER  -

JESENSKÁ, Andrea; Milan BARTOŠ; Vladimíra CZERNEKOVÁ; Ivan RYCHLÍK; Ivo PAVLÍK a Jiří DAMBORSKÝ. Cloning, expression and preliminary characterization of novel haloalkane dehalogenase DhmA from Mycobacterium avium N85. \textit{Applied and Environmental Microbiology}. 2002, roč.~68, č.~8, s.~3724-7453. ISSN~1098-5336.

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