Cloning and characterization of a novel thermostable
Mn(II)-dependent 2,3-dihydroxybiphenyl 1,2-dioxygenase from a
PCB and naphthalene degrading Bacillus sp. JF8

J 2003

Cloning and characterization of a novel thermostable Mn(II)-dependent 2,3-dihydroxybiphenyl 1,2-dioxygenase from a PCB and naphthalene degrading Bacillus sp. JF8

HATTA, Takashi; Gouri MUKERJEE-DHAR; Jiri DAMBORSKY; Hohzoh KIYOHARA; Kazuhide KIMBARA et. al.

Základní údaje

Originální název

Cloning and characterization of a novel thermostable Mn(II)-dependent 2,3-dihydroxybiphenyl 1,2-dioxygenase from a PCB and naphthalene degrading Bacillus sp. JF8

Autoři

HATTA, Takashi; Gouri MUKERJEE-DHAR; Jiri DAMBORSKY; Hohzoh KIYOHARA a Kazuhide KIMBARA

Vydání

Journal of Biological Chemistry, 2003, 0021-9258

Další údaje

Jazyk

angličtina

Typ výsledku

Článek v odborném periodiku

Obor

10600 1.6 Biological sciences

Stát vydavatele

Spojené státy

Utajení

není předmětem státního či obchodního tajemství

Odkazy

URL

Impakt faktor

Impact factor: 6.482

Kód RIV

RIV/00216224:14310/03:00008775

Organizační jednotka

Přírodovědecká fakulta

UT WoS

000183354200023

Klíčová slova anglicky

ENZYME; THERMOSTABILITY; PCB; BIODEGRADATION; CLONING

Štítky

biodegradation, CLONING, Enzyme, PCB, THERMOSTABILITY

Příznaky

Recenzováno

Změněno: 19. 3. 2010 10:54, prof. Mgr. Jiří Damborský, Dr.

Anotace

V originále

A novel thermostable Mn(II)-dependent 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC_JF8) catalyzing the meta-cleavage of the hydroxylated biphenyl ring was purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8 and the gene cloned. The native and recombinant BphC enzyme was purified to homogeneity. The enzyme has a molecular mass of 125+-10 kDa and was composed of 4 identical subunits (35 kDa). BphC_JF8 has a temperature optimum of 85 C and a pH optimum of 8.5. It exhibited a half life of 30 min at 80 C and 81 min at 75 C, making it the most thermostable extradiol dioxygenase studied. ICP-MS analysis confirmed the presence of 4.0 to 4.8 manganese atoms per enzyme molecule. The ESR spectrum of BphC_JF8 exhibited g = 2.02 and g = 4.06 signals having the 6-fold hyperfine splitting characteristic of Mn(II). The enzyme can oxidize a wide range of substrates and the substrate preference was in the order 2,3-dihydroxybiphenyl > 3-methylcatechol > catechol > 4-methylcatechol > 4-chlorocatechol. The enzyme is resistant to denaturation by various chelators and inhibitors (EDTA, 1,10-phenanthroline, H2O2, 3-chlorocatechol) and did not exhibit substrate inhibition even at 3 mM 2,3-dihydroxybiphenyl. A decrease in Km accompanied an increase in temperature and the Km value of 0.095 uM for 2,3-dihydroxybiphenyl (at 60 C) is among the lowest reported. The kinetic properties and thermal stability of the native and recombinant enzyme were identical. The primary structure of BphC_JF8 exhibits less than 25% sequence identity to other 2,3-dihydroxybiphenyl 1,2-dioxygenases. The metal ligands and active site residues of extradiol dioxygenases are conserved although several amino acid residues found exclusively in enzymes which preferentially cleave bicyclic substrates are missing in BphC_JF8. A 3-D homology model of BphC_JF8 provided a basis for understanding the substrate specificity, quaternary structure and stability of the enzyme.

Návaznosti

LN00A016, projekt VaV

Název: BIOMOLEKULÁRNÍ CENTRUM

Investor: Ministerstvo školství, mládeže a tělovýchovy ČR, Biomolekulární centrum

Citovat

HATTA, Takashi; Gouri MUKERJEE-DHAR; Jiri DAMBORSKY; Hohzoh KIYOHARA a Kazuhide KIMBARA. Cloning and characterization of a novel thermostable Mn(II)-dependent 2,3-dihydroxybiphenyl 1,2-dioxygenase from a PCB and naphthalene degrading Bacillus sp. JF8. Journal of Biological Chemistry. 2003, roč. 278, č. 24, s. 21483-21492. ISSN 0021-9258.

@article{487456,
   author = {Hatta, Takashi and MukerjeeandDhar, Gouri and Damborsky, Jiri and Kiyohara, Hohzoh and Kimbara, Kazuhide},
   article_number = {24},
   keywords = {ENZYME; THERMOSTABILITY; PCB; BIODEGRADATION; CLONING},
   language = {eng},
   issn = {0021-9258},
   journal = {Journal of Biological Chemistry},
   title = {Cloning and characterization of a novel thermostable Mn(II)-dependent 2,3-dihydroxybiphenyl 1,2-dioxygenase from a PCB and naphthalene degrading Bacillus sp. JF8},
   url = {http://ncbr.chemi.muni.cz/~jiri/abstracts/jbc03a.html},
   volume = {278},
   year = {2003}
}

TY  - JOUR
ID  - 487456
AU  - Hatta, Takashi - Mukerjee-Dhar, Gouri - Damborsky, Jiri - Kiyohara, Hohzoh - Kimbara, Kazuhide
PY  - 2003
TI  - Cloning and characterization of a novel thermostable Mn(II)-dependent 2,3-dihydroxybiphenyl 1,2-dioxygenase from a PCB and naphthalene degrading Bacillus sp. JF8
JF  - Journal of Biological Chemistry
VL  - 278
IS  - 24
SP  - 21483-21492
EP  - 21483-21492
SN  - 00219258
KW  - ENZYME
KW  - THERMOSTABILITY
KW  - PCB
KW  - BIODEGRADATION
KW  - CLONING
UR  - http://ncbr.chemi.muni.cz/~jiri/abstracts/jbc03a.html
N2  - A novel thermostable Mn(II)-dependent 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC_JF8) catalyzing the meta-cleavage of the hydroxylated biphenyl ring was purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8 and the gene cloned. The native and recombinant BphC enzyme was purified to homogeneity. The enzyme has a molecular mass of 125+-10 kDa and was composed of 4 identical subunits (35 kDa). BphC_JF8 has a temperature optimum of 85 C and a pH optimum of 8.5. It exhibited a half life of 30 min at 80 C and 81 min at 75 C, making it the most thermostable extradiol dioxygenase studied. ICP-MS analysis confirmed the presence of 4.0 to 4.8 manganese atoms per enzyme molecule. The ESR spectrum of BphC_JF8 exhibited g = 2.02 and g = 4.06 signals having the 6-fold hyperfine splitting characteristic of Mn(II). The enzyme can oxidize a wide range of substrates and the substrate preference was in the order 2,3-dihydroxybiphenyl > 3-methylcatechol > catechol > 4-methylcatechol > 4-chlorocatechol. The enzyme is resistant to denaturation by various chelators and inhibitors (EDTA, 1,10-phenanthroline, H2O2, 3-chlorocatechol) and did not exhibit substrate inhibition even at 3 mM 2,3-dihydroxybiphenyl. A decrease in Km accompanied an increase in temperature and the Km value of 0.095 uM for 2,3-dihydroxybiphenyl (at 60 C) is among the lowest reported. The kinetic properties and thermal stability of the native and recombinant enzyme were identical. The primary structure of BphC_JF8 exhibits less than 25% sequence identity to other 2,3-dihydroxybiphenyl 1,2-dioxygenases. The metal ligands and active site residues of extradiol dioxygenases are conserved although several amino acid residues found exclusively in enzymes which preferentially cleave bicyclic substrates are missing in BphC_JF8. A 3-D homology model of BphC_JF8 provided a basis for understanding the substrate specificity, quaternary structure and stability of the enzyme.
ER  -

HATTA, Takashi; Gouri MUKERJEE-DHAR; Jiri DAMBORSKY; Hohzoh KIYOHARA a Kazuhide KIMBARA. Cloning and characterization of a novel thermostable Mn(II)-dependent 2,3-dihydroxybiphenyl 1,2-dioxygenase from a PCB and naphthalene degrading Bacillus sp. JF8. \textit{Journal of Biological Chemistry}. 2003, roč.~278, č.~24, s.~21483-21492. ISSN~0021-9258.

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