Výpis publikací

MUSIL, Miloš; Simeon BORKO; Joan PLANAS IGLESIAS; Dávid LACKO; Monika ROSINSKA; Petr KABOUREK; Ligia O. MARTINS; Mateusz TATARUCH; Jiří DAMBORSKÝ; Stanislav MAZURENKO a David BEDNÁŘ. FireProtDB 2.0: large-scale manually curated database of the protein stability data. NUCLEIC ACIDS RESEARCH. Oxford: OXFORD UNIV PRESS, 2026, roč. 54, D1, s. "D409"-"D418", 10 s. ISSN 0305-1048. Dostupné z: https://doi.org/10.1093/nar/gkaf1211.

MARQUES, Sérgio Manuel; Simeon BORKO; Ondřej VÁVRA; Jan DVORSKÝ; Petr KOHOUT; Petr KABOUREK; Lukáš HEJTMÁNEK; Jiří DAMBORSKÝ a David BEDNÁŘ. Caver Web 2.0: analysis of tunnels and ligand transport in dynamic ensembles of proteins. Nucleic Acids Research. Oxford: Oxford University Press, 2025, roč. 53, May 2025, s. "W132"-"W142", 11 s. ISSN 0305-1048. Dostupné z: https://doi.org/10.1093/nar/gkaf399.

KHAN, Rayyan Tariq; Petra POKORNÁ; Jan DVORSKÝ; Simeon BORKO; Ihor AREFIEV; Joan PLANAS IGLESIAS; Adam DOBIÁŠ; José Gaspar RANGEL PAMPLONA PIZARRO PINTO; Veronika SZOTKOWSKÁ; Jaroslav ŠTĚRBA; Ondřej SLABÝ; Jiří DAMBORSKÝ; Stanislav MAZURENKO a David BEDNÁŘ. A computational workflow for analysis of missense mutations in precision oncology. JOURNAL OF CHEMINFORMATICS. ENGLAND: BMC, 2024, roč. 16, č. 1, s. 1-10. ISSN 1758-2946. Dostupné z: https://doi.org/10.1186/s13321-024-00876-3.

PLANAS IGLESIAS, Joan; Simeon BORKO; Jan SWIATKOWSKI; Matej ELIAS; Martin HAVLÁSEK; Ondrej SALAMON; Ekaterina GRAKOVA; Antonín KUNKA; Tomas MARTINOVIC; Jiří DAMBORSKÝ; Jan MARTINOVIC a David BEDNÁŘ. AggreProt: a web server for predicting and engineering aggregation prone regions in proteins. Nucleic Acids Research. Oxford: Oxford University Press, 2024, roč. 52, W1, s. "W159"-"W169", 11 s. ISSN 0305-1048. Dostupné z: https://doi.org/10.1093/nar/gkae420.

KHAN, Rayyan Tariq; Petra POKORNÁ; Jan DVORSKÝ; Simeon BORKO; Adam DOBIÁŠ; Joan PLANAS IGLESIAS; Stanislav MAZURENKO; Ihor AREFIEV; José Gaspar RANGEL PAMPLONA PIZARRO PINTO; Veronika SZOTKOWSKÁ; Jaroslav ŠTĚRBA; Jiří DAMBORSKÝ; Ondřej SLABÝ a David BEDNÁŘ. Analysis of mutations in precision oncology using the automated, accurate, and user-friendly web tool PredictONCO. Computational and Structural Biotechnology Journal. AMSTERDAM: Elsevier, 2024, roč. 24, December 2024, s. 734-738. ISSN 2001-0370. Dostupné z: https://doi.org/10.1016/j.csbj.2024.11.026.

MUSIL, Miloš; Andrej JEZIK; Jana HORÁČKOVÁ; Simeon BORKO; Petr KABOUREK; Jiří DAMBORSKÝ a David BEDNÁŘ. FireProt 2.0: web-based platform for the fully automated design of thermostable proteins. Briefings in Bioinformatics. Oxford University Press, 2024, roč. 25, č. 1, s. 1-10. ISSN 1467-5463. Dostupné z: https://doi.org/10.1093/bib/bbad425.

ŠTOURAČ, Jan; Simeon BORKO; Rayyan Tariq KHAN; Petra POKORNÁ; Adam DOBIÁŠ; Joan PLANAS IGLESIAS; Stanislav MAZURENKO; José Gaspar RANGEL PAMPLONA PIZARRO PINTO; Veronika SZOTKOWSKÁ; Jaroslav ŠTĚRBA; Ondřej SLABÝ; Jiří DAMBORSKÝ a David BEDNÁŘ. PredictONCO: a web tool supporting decision-making in precision oncology by extending the bioinformatics predictions with advanced computing and machine learning. Briefings in Bioinformatics. Oxford University Press, 2024, roč. 25, č. 1, s. 1-10. ISSN 1467-5463. Dostupné z: https://doi.org/10.1093/bib/bbad441.

ŠTOURAČ, Jan; Rayyan Tariq KHAN; Simeon BORKO; Petra POKORNÁ; Adam DOBIÁŠ; José Gaspar RANGEL PAMPLONA PIZARRO PINTO; Jaroslav ŠTĚRBA; Ondřej SLABÝ; Jiří DAMBORSKÝ a David BEDNÁŘ. PredictSNP Onco 1.0. 2022.