Publication Records

NAVRÁTIL, Jiří, Monika KRATOCHVÍLOVÁ, Martina RAUDENSKÁ, Jan BALVAN, Tomáš VIČAR, Kateřina PETRLÁKOVÁ, Kanako SUZUKI, Lucie JADRNA, Jiri BURSA, Martin KRÄTER, Kyoohyun KIM, Michal MASAŘÍK and Jaromír GUMULEC. Long-term zinc treatment alters the mechanical properties and metabolism of prostate cancer cells. Cancer Cell International. London: BMC, 2024, vol. 24, No 1, p. 1-17. ISSN 1475-2867. Available from: https://dx.doi.org/10.1186/s12935-024-03495-y.

HÁNĚLOVÁ, Klára, Martina RAUDENSKÁ, Monika KRATOCHVÍLOVÁ, Jiří NAVRÁTIL, Tomáš VIČAR, Mária BUGAJOVÁ, Jaromír GUMULEC, Michal MASAŘÍK and Jan BALVAN. Autophagy modulators influence the content of important signalling molecules in PS-positive extracellular vesicles. Cell Communication and Signaling. LONDON: BMC, 2023, vol. 21, No 1, p. 1-21. ISSN 1478-811X. Available from: https://dx.doi.org/10.1186/s12964-023-01126-z.

RAUDENSKÁ, Martina, Tomáš VIČAR, Jaromír GUMULEC and Michal MASAŘÍK. Johann Gregor Mendel: the victory of statistics over human imagination. European Journal of Human Genetics. London: Nature Publishing Group, 2023, vol. 31, No 7, p. 744-748. ISSN 1018-4813. Available from: https://dx.doi.org/10.1038/s41431-023-01303-1.

BALVAN, Jan, Tomáš VIČAR and Klára HÁNĚLOVÁ. Analýza typu buněčné smrti kvantitativně-fázovým zobrazováním (Analysis of cell death type by quantitative phase imaging). Jan Balvan, 2022.

VIČAR, Tomáš, Jiri CHMELIK, Jiří NAVRÁTIL, Radim KOLAR, Larisa CHMELIKOVA, Vratislav CMIEL, Jiri JAGOS, Ivo PROVAZNIK, Michal MASAŘÍK and Jaromír GUMULEC. Cancer cell viscoelasticity measurement by quantitative phase and flow stress induction. Biophysical Journal. CAMBRIDGE: CELL PRESS, 2022, vol. 121, No 9, p. 1632-1642. ISSN 0006-3495. Available from: https://dx.doi.org/10.1016/j.bpj.2022.04.002.

PELTANOVÁ, Barbora, Hana HOLCOVÁ POLANSKÁ, Martina RAUDENSKÁ, Jan BALVAN, Jiří NAVRÁTIL, Tomáš VIČAR, Jaromír GUMULEC, Barbora ČECHOVÁ, Martin KRÄTER, Jochen GUCK, David KALFEŘT, Marek GREGA, Jan PLZÁK, Jan BETKA and Michal MASAŘÍK. mRNA Subtype of Cancer-Associated Fibroblasts Significantly Affects Key Characteristics of Head and Neck Cancer Cells. Cancers. Basel: MDPI, 2022, vol. 14, No 9, p. 1-21. ISSN 2072-6694. Available from: https://dx.doi.org/10.3390/cancers14092286.

LEISCHNER FIALOVÁ, Jindřiška, Kateřina PETRLÁKOVÁ, Martina RAUDENSKÁ, Lucie MIKSATKOVA, Renata ZOBALOVA, Jiří NAVRÁTIL, Jana ŠMIGOVÁ, Taraka Ramji MOTURU, Tomáš VIČAR, Jan BALVAN, Katerina VESELA, Nikita ABRAMENKO, Zdenek KEJIK, Robert KAPLANEK, Jaromír GUMULEC, Daniel ROSEL, Pavel MARTASEK, Jan BRÁBEK, Milan JAKUBEK, Jiri NEUZIL and Michal MASAŘÍK. Pentamethinium salts suppress key metastatic processes by regulating mitochondrial function and inhibiting dihydroorotate dehydrogenase respiration. Biomedicine & Pharmacotherapy. ISSY-LES-MOULINEAUX: ELSEVIER FRANCE, 2022, vol. 154, October 2022, p. 1-15. ISSN 0753-3322. Available from: https://dx.doi.org/10.1016/j.biopha.2022.113582.

EYER, Luděk, Pavel SVOBODA, Jan BALVAN, Tomáš VIČAR, Martina RAUDENSKÁ, Michal ŠTEFÁNIK, Jan HAVIERNIK, Ivana HUVAROVÁ, Petra STRAKOVÁ, Ivo RUDOLF, Zdeněk HUBÁLEK, Katherine SELEY-RADTKE, Erik DE CLERCQ and Daniel RŮŽEK. Broad-Spectrum Antiviral Activity of 3'-Deoxy-3'Fluoroadenosine against Emerging Flaviviruses. Antimicrobial Agents and Chemotherapy. Washington: AMER SOC MICROBIOLOG, 2021, vol. 65, No 2, p. 1-19. ISSN 0066-4804. Available from: https://dx.doi.org/10.1128/AAC.01522-20.

VIČAR, Tomáš, Jaromír GUMULEC, Radim KOLAR, Olga KOPECNA, Eva PAGACOVA, Iva FALKOVA and Martin FALK. DeepFoci: Deep learning-based algorithm for fast automatic analysis of DNA double-strand break ionizing radiation-induced foci. Computational and Structural Biotechnology Journal. Amsterdam: Elsevier, 2021, vol. 19, No 2021, p. 6465-6480. ISSN 2001-0370. Available from: https://dx.doi.org/10.1016/j.csbj.2021.11.019.

ŠTĚPKA, Petr, Monika KRATOCHVÍLOVÁ, Michaela KUCHYNKA, Martina RAUDENSKÁ, Hana HOLCOVÁ POLANSKÁ, Tomáš VIČAR, Tomáš VACULOVIČ, Markéta VACULOVIČOVÁ and Michal MASAŘÍK. Determination of Renal Distribution of Zinc, Copper, Iron, and Platinum in Mouse Kidney Using LA-ICP-MS. BioMed Research International. London: Hindawi, 2021, vol. 2021, October 2021, p. 1-8. ISSN 2314-6133. Available from: https://dx.doi.org/10.1155/2021/6800294.

GUMULEC, Jaromír and Tomáš VIČAR. Multimodal image segmentation. In Andreas Walter; Julia Gisela Mannheim; Carmel J Caruana. Imaging Modalities for Biological and Preclinical Research: A Compendium, Volume 2. Bristol: IOP Publishing, 2021, p. "III.4.d-1"-"III.4.d-12", 12 pp. IPEM-IOP series in physics and engineering in medicine and biology. ISBN 978-0-7503-3745-8. Available from: https://dx.doi.org/10.1088/978-0-7503-3747-2ch27.

ŠTEFANČÍK, Michal, Lucie VÁLKOVÁ, Jana VEVERKOVÁ, Jan BALVAN, Tomáš VIČAR, Petr BABULA, Josef MASEK, Pavel KULICH and Monika PÁVKOVÁ GOLDBERGOVÁ. Ni and TiO2 nanoparticles cause adhesion and cytoskeletal changes in human osteoblasts. Environmental Science and Pollution Research. Heidelberg: Springer Heidelberg, 2021, vol. 28, No 5, p. 6018-6029. ISSN 0944-1344. Available from: https://dx.doi.org/10.1007/s11356-020-10908-8.

VIČAR, Tomáš, Jaromír GUMULEC, Radim KOLÁŘ, Jiri CHMELIK, Jiří NAVRÁTIL, Larisa CHMELIKOVA, Vratislav CMIEL, Ivo PROVAZNIK and Michal MASAŘÍK. Parametric Deconvolution for Cancer Cells Viscoelasticity Measurements from Quantitative Phase Images. In 2021 43rd Annual International Conference of the IEEE Engineering in Medicine & Biology Society (EMBC). United States: IEEE, 2021, p. 439-442. ISBN 978-1-7281-1179-7. Available from: https://dx.doi.org/10.1109/EMBC46164.2021.9630524.

VIČAR, Tomáš, Jiri CHEMELIK, Roman JAKUBICEK, Larisa CHMELIKOVA, Jaromír GUMULEC, Jan BALVAN, Ivo PROVAZNÍK and Radim KOLAR. Self-supervised pretraining for transferable quantitative phase image cell segmentation. BIOMEDICAL OPTICS EXPRESS. WASHINGTON: OPTICAL SOC AMER, 2021, vol. 12, No 10, p. 6514-6528. ISSN 2156-7085. Available from: https://dx.doi.org/10.1364/BOE.433212.

FOJTŮ, Michaela, Jan BALVAN, Tomáš VIČAR, Hana HOLCOVÁ POLANSKÁ, Barbora PELTANOVÁ, Stanislava MATEJKOVA, Martina RAUDENSKÁ, Jiri STURALA, Paula MAYORGA-BURREZO, Michal MASAŘÍK and Martin PUMERA. Silicane Derivative Increases Doxorubicin Efficacy in an Ovarian Carcinoma Mouse Model: Fighting Drug Resistance. ACS APPLIED MATERIALS & INTERFACES. WASHINGTON: AMER CHEMICAL SOC, 2021, vol. 13, No 27, p. 31355-31370. ISSN 1944-8244. Available from: https://dx.doi.org/10.1021/acsami.0c20458.

PELTANOVÁ, Barbora, Hana HOLCOVÁ POLANSKÁ, Martina RAUDENSKÁ, Jan BALVAN, Jiří NAVRÁTIL, Tomáš VIČAR, Jaromír GUMULEC, David KALFEŘT, Marek GREGA, Jan PLZÁK, Jan BETKA and Michal MASAŘÍK. The impact of mRNA subtype of cancer-associated fibroblasts on metabolic symbiosis in head and neck cancer. In Lactate: Unconventional roles of a nutrient along tumor landscape. 2021.

FEITH, Marek, Tomáš VIČAR, Jaromír GUMULEC, Martina RAUDENSKÁ, Anette GJÖRLOFF WINGREN, Michal MASAŘÍK and Jan BALVAN. Quantitative Phase Dynamics of Cancer Cell Populations Affected by Blue Light. Applied Sciences. Basel: MDPI, 2020, vol. 10, No 7, p. 1-13. ISSN 2076-3417. Available from: https://dx.doi.org/10.3390/app10072597.

VIČAR, Tomáš, Martina RAUDENSKÁ, Jaromír GUMULEC and Jan BALVAN. The Quantitative-Phase Dynamics of Apoptosis and Lytic Cell Death. Scientific reports. London: Nature Publishing Group, 2020, vol. 10, No 1, p. 1-12. ISSN 2045-2322. Available from: https://dx.doi.org/10.1038/s41598-020-58474-w.

PELTANOVÁ, Barbora, Hana HOLCOVÁ POLANSKÁ, Tomáš VIČAR, David KALFEŘT, Jan BETKA, Jan PLZÁK and Michal MASAŘÍK. You Scratch My Back; I'll Ride on Yours: Metabolic Manipulation in HNSCC Stroma. In 17th International Medical Postgraduate Conference. 2020.

FOJTŮ, Michaela, Jan BALVAN, Martina RAUDENSKÁ, Tomáš VIČAR, Jiří ŠTURALA, Zdeněk SOFER, Jan LUXA, Jan PLUTNAR, Michal MASAŘÍK and Martin PUMERA. 2D Germanane Derivative as a Vector for Overcoming Doxorubicin Resistance in Cancer Cells. Applied Materials Today. Amsterdam: Elsevier, 2020, vol. 20, SEP 2020, p. 1-14. ISSN 2352-9407. Available from: https://dx.doi.org/10.1016/j.apmt.2020.100697.

FOJTŮ, Michaela, Jan BALVAN, Martina RAUDENSKÁ, Tomáš VIČAR, Daniel BOUSA, Zdeněk SOFER, Michal MASAŘÍK and Martin PUMERA. Black Phosphorus Cytotoxicity Assessments Pitfalls: Advantages and Disadvantages of Metabolic and Morphological Assays. Chemistry - A European Journal. WEINHEIM: Wiley, 2019, vol. 25, No 1, p. 349-360. ISSN 0947-6539. Available from: https://dx.doi.org/10.1002/chem.201804434.

VIČAR, Tomáš, Jan BALVAN, Josef JAROŠ, Florian JUG, Radim KOLAR, Michal MASAŘÍK and Jaromír GUMULEC. Cell segmentation methods for label-free contrast microscopy: review and comprehensive comparison. BMC Bioinformatics. London: BioMed Central, 2019, vol. 20, No 360, p. 1-25. ISSN 1471-2105. Available from: https://dx.doi.org/10.1186/s12859-019-2880-8.

RAUDENSKÁ, Martina, Monika KRATOCHVÍLOVÁ, Tomáš VIČAR, Jaromír GUMULEC, Jan BALVAN, Hana POLANSKÁ, Jan PŘIBYL and Michal MASAŘÍK. Cisplatin enhances cell stiffness and decreases invasiveness rate in prostate cancer cells by actin accumulation. Scientific reports. London: NATURE PUBLISHING GROUP, 2019, vol. 9, No 1660, p. 1-11. ISSN 2045-2322. Available from: https://dx.doi.org/10.1038/s41598-018-38199-7.

VIČAR, Tomáš, Jaromír GUMULEC, Jan BALVAN, Michal HRACHO and R. KOLAR. Label-Free Nuclear Staining Reconstruction in Quantitative Phase Images Using Deep Learning. Online. In Lhotska, L Sukupova, L Lackovic, I Ibbott, GS. WORLD CONGRESS ON MEDICAL PHYSICS AND BIOMEDICAL ENGINEERING 2018, VOL 1. NEW YORK: SPRINGER, 2019, p. 239-242. ISBN 978-981-10-9034-9. Available from: https://dx.doi.org/10.1007/978-981-10-9035-6_43.

FOJTŮ, Michaela, Jan BALVAN, Tomáš VIČAR, Marek FEITH, Zdeněk SOFER, Michal MASAŘÍK and Martin PUMERA. Controversy in Cytotoxicity Assessment of Black Phosphorus Nanoparticles. 2018. ISBN 978-80-210-8941-9.

POLANSKÁ, Hana, Marcela VLČNOVSKÁ, Monika KRATOCHVÍLOVÁ, Michaela TVRDOŇOVÁ, Martina RAUDENSKÁ, Tomáš VIČAR, Veronika DILLINGEROVÁ, Viktor KANICKÝ, Tomáš VACULOVIČ and Michal MASAŘÍK. Renální distribuce mědi a platiny – myší model. In XLII. Brněnské onkologické dny. 2018. ISSN 0862-495X.

PELTANOVÁ, Barbora, Monika KRATOCHVÍLOVÁ, Markéta SVOBODOVÁ, Hana POLANSKÁ, Martina RAUDENSKÁ, Jaromír GUMULEC, Jan PŘIBYL, Tomáš VIČAR and Michal MASAŘÍK. Atomic force microscope-based analysis of cancer cell stiffness: its potential as a biomarker of epithelial-mesenchymal transition in head and neck cancer-pilot study. In CEITEC PhD Retreat II. 2017. ISBN 978-80-210-8550-3.