Publication Records

MAZIER, Arnaud, Alexandre BILGER, Antonio E FORTE, Igor PETERLÍK, Jack S HALE and Stephane P A BORDAS. Inverse deformation analysis: an experimental and numerical assessment using the FEniCS Project. ENGINEERING WITH COMPUTERS. GERMANY: SPRINGER, 2022, vol. 38, No 5, p. 4099-4113. ISSN 0177-0667. Available from: https://dx.doi.org/10.1007/s00366-021-01597-z.

MAŠKA, Martin, Tereza NEČASOVÁ, David WIESNER, Dmitry SOROKIN, Igor PETERLÍK, Vladimír ULMAN and David SVOBODA. Toward Robust Fully 3D Filopodium Segmentation and Tracking in Time-Lapse Fluorescence Microscopy. Online. In 26th IEEE International Conference on Image Processing. Taipei: IEEE, 2019, p. 819-823. ISBN 978-1-5386-6249-6. Available from: https://dx.doi.org/10.1109/ICIP.2019.8803721.

PETERLÍK, Igor, Hadrien COURTECUISSE, Robert ROHLING, Purang ABOLMAESUMI, Christopher NGUAN, Stéphane COTIN and Septimiu SALCUDEAN. Fast elastic registration of soft tissues under large deformations. Medical Image Analysis. Elsevier, 2018, vol. 45, No 2018, p. 24-40. ISSN 1361-8415. Available from: https://dx.doi.org/10.1016/j.media.2017.12.006.

SOROKIN, Dmitry, Igor PETERLÍK, Vladimír ULMAN, David SVOBODA, Tereza NEČASOVÁ, Katsiarina MORGAENKO, Lívia EISELLEOVÁ, Lenka TESAŘOVÁ and Martin MAŠKA. FiloGen: A Model-Based Generator of Synthetic 3-D Time-Lapse Sequences of Single Motile Cells with Growing and Branching Filopodia. IEEE Transactions on Medical Imaging. IEEE, 2018, vol. 37, No 12, p. 2630-2641. ISSN 0278-0062. Available from: https://dx.doi.org/10.1109/TMI.2018.2845884.

PETERLÍK, Igor, David SVOBODA, Vladimír ULMAN, Dmitry SOROKIN and Martin MAŠKA. Model-Based Generation of Synthetic 3D Time-Lapse Sequences of Multiple Mutually Interacting Motile Cells with Filopodia. Online. In Simulation and Synthesis in Medical Imaging. Cham: Springer, 2018, p. 71-79. ISBN 978-3-030-00535-1. Available from: https://dx.doi.org/10.1007/978-3-030-00536-8_8.

SOROKIN, Dmitry, Igor PETERLÍK, Marco TEKTONIDIS, Karl ROHR and Pavel MATULA. Non-rigid Contour-Based Registration of Cell Nuclei in 2-D Live Cell Microscopy Images Using a Dynamic Elasticity Model. IEEE Transactions on Medical Imaging. IEEE, 2018, vol. 37, No 1, p. 173-184. ISSN 0278-0062. Available from: https://dx.doi.org/10.1109/TMI.2017.2734169.

RUČKA, Lukáš and Igor PETERLÍK. Fast reconstruction of image deformation field using radial basis function. Online. In 2017 IEEE 14th International Symposium on Biomedical Imaging (ISBI). Neuveden: IEEE, 2017, p. 1146-1150. ISBN 978-1-5090-1171-1. Available from: https://dx.doi.org/10.1109/ISBI.2017.7950719.

PETERLÍK, Igor, Nazim HAOUCHINE, Lukáš RUČKA and Stéphane COTIN. Image-driven Stochastic Identification of Boundary Conditions for Predictive Simulation. Online. In Descoteaux M., Maier-Hein L., Franz A., Jannin P., Collins D., Duchesne S. Medical Image Computing and Computer-Assisted Intervention − MICCAI 2017: 20th International Conference, Quebec City, QC, Canada, September 11-13, 2017, Proceedings, Part II. Cham: Springer, 2017, p. 548-556. ISBN 978-3-319-66184-1. Available from: https://dx.doi.org/10.1007/978-3-319-66185-8_62.

SOROKIN, Dmitry, Igor PETERLÍK, Vladimír ULMAN, David SVOBODA and Martin MAŠKA. Model-Based Generation of Synthetic 3D Time-Lapse Sequences of Motile Cells with Growing Filopodia. Online. In 14th IEEE International Symposium on Biomedical Imaging. Melbourne: IEEE, 2017, p. 822-826. ISBN 978-1-5090-1172-8. Available from: https://dx.doi.org/10.1109/ISBI.2017.7950644.

VÝTVAROVÁ, Eva, Jan FOUSEK, Marek BARTOŇ, Radek MAREČEK, Martin GAJDOŠ, Martin LAMOŠ, Marie NOVÁKOVÁ, Tomáš SLAVÍČEK, Igor PETERLÍK and Michal MIKL. The Impact of Diverse Preprocessing Pipelines on Brain Functional Connectivity. Online. In 25th European Signal Processing Conference (EUSIPCO), Kos, Greece. Kos, Greece: IEEE, 2017, p. 2644-2648. ISBN 978-0-9928626-7-1. Available from: https://dx.doi.org/10.23919/EUSIPCO.2017.8081690.

PLANTEFÈVE, Rosalie, Igor PETERLÍK, Nazim HAOUCHINE and Stéphane COTIN. Patient-Specific Biomechanical Modeling for Guidance During Minimally-Invasive Hepatic Surgery. ANNALS OF BIOMEDICAL ENGINEERING. NEW YORK: SPRINGER, 2016, vol. 44, No 1, p. 139-153. ISSN 0090-6964. Available from: https://dx.doi.org/10.1007/s10439-015-1419-z.

HAMZÉ, Noura, Igor PETERLÍK, Stéphane COTIN and Caroline ESSERT. Preoperative trajectory planning for percutaneous procedures in deformable environments. Computerized Medical Imaging and Graphics. Elsevier, 2016, vol. 47, No 1, p. 16-28. ISSN 0895-6111. Available from: https://dx.doi.org/10.1016/j.compmedimag.2015.10.002.

TALBOT, Hugo, Nazim HAOUCHINE, Igor PETERLÍK, Jeremie DEQUIDT, Christian DURIEZ, Hervé DELINGETTE and Stephane COTIN. Dirk Bartz Prize for Visual Computing in Medicine. Eurographics Association, 2015.

HAOUCHINE, Nazim, Stephane COTIN, Igor PETERLÍK, Jeremie DEQUIDT, Mario Sanz LOPEZ, Erwan KERRIEN and Marie-Odile BERGER. Impact of Soft Tissue Heterogeneity on Augmented Reality for Liver Surgery. IEEE Transactions on Visualization and Computer Graphics. 2015, vol. 21, No 5, p. 584 - 597. ISSN 1077-2626. Available from: https://dx.doi.org/10.1109/TVCG.2014.2377772.

SVOBODA, David, Vladimír ULMAN and Igor PETERLÍK. On Proper Simulation of Chromatin Structure in Static Images As Well As in Time-Lapse Sequences in Fluorescence Microscopy. In Proceedings of 2015 IEEE International Symposium on Biomedical Imaging. Stoughton (WI, USA): Engineering in Medicine and Biology Society, 2015, p. 712-716. ISBN 978-1-4799-2374-8. Available from: https://dx.doi.org/10.1109/ISBI.2015.7163972.

PETERLÍK, Igor. Physics-Based Needle Insertion into Heterogeneous Tissues for Pre-operative Planning. Brno: IHU - Institute of image-guided surgery, 2015, 8 pp. 20160201.

PETERLÍK, Igor and Antonín KLÍMA. Towards an efficient data assimilation in physically-based medical simulations. Online. In Bin Ma et al. Proceedings of IEEE International Conference on Bioinformatics and Biomedicine (BIBM), 2015. Washington, D.C. , USA: IEEE, 2015, p. 1412-1419. ISBN 978-1-4673-6798-1. Available from: https://dx.doi.org/10.1109/BIBM.2015.7359884.

PLANTEFÈVE, Rosalie, Igor PETERLÍK, Hadrien COURTECUISSE, Raffaella TRIVISONNE, Jean-Pierre RADOUX and Stéphane COTIN. Atlas-based Transfer of Boundary Conditions for Biomechanical Simulation. In MICCAI - 17th International Conference on Medical Image Computing and Computer Assisted Intervention. Neuveden: Springer International Publishing, 2014, p. 33-40. ISBN 978-3-319-10469-0. Available from: https://dx.doi.org/10.1007/978-3-319-10470-6_5.

PETERLÍK, Igor, Tomáš GOLEMBIOVSKÝ, Christian DURIEZ and Stephane COTIN. Complete Real-Time Liver Model Including Glisson's Capsule, Vascularization and Parenchyma. In J.D. Westwood, S.W. Westwood, L. Felländer-Tsai. Medicine Meets Virtual Reality 21: NextMed/MMVR21. Neuveden: IOS Press, 2014, p. 312-319. ISBN 978-1-61499-374-2. Available from: https://dx.doi.org/10.3233/978-1-61499-375-9-312.

COURTECUISSE, Hadrien, Igor PETERLÍK, Raffaella TRIVISONNE, Christian DURIEZ and Stephane COTIN. Constraint-based Simulation for Non-Rigid Real-time Registration. In J.D. Westwood, S.W. Westwood, L. Felländer-Tsai. Medicine Meets Virtual Reality 21: NextMed/MMVR21. Neuveden: IOS Press, 2014, p. 76-82. ISBN 978-1-61499-374-2. Available from: https://dx.doi.org/10.3233/978-1-61499-375-9-76.

PETERLÍK, Igor and Nazim HAOUCHINE. Impact of Soft Tissue Heterogeneity on Augmented Reality for Liver Surgery. In Siggraph Asia. 2014.

PETERLÍK, Igor, Hadrien COURTECUISSE, Christian DURIEZ and Stephane COTIN. Model-Based Identification of Anatomical Boundary Conditions in Living Tissues. In Stoyanov, Danail and Collins, D.Louis and Sakuma, Ichiro and Abolmaesumi, Purang and Jannin, Pierre. Information Processing in Computer-Assisted Interventions. Neuveden: Springer International Publishing, 2014, p. 196-205. ISBN 978-3-319-07520-4. Available from: https://dx.doi.org/10.1007/978-3-319-07521-1_21.

BOSMAN, Julien, Nazim HAOUCHINE, Jeremie DEQUIDT, Igor PETERLÍK, Stephane COTIN and Christian DURIEZ. The Role of Ligaments: Patient-Specific or Scenario-Specific? In International Symposium on Biomedical Simulation ISBMS. Neuveden: Springer International Publishing, 2014, p. 228-232. ISBN 978-3-319-12056-0. Available from: https://dx.doi.org/10.1007/978-3-319-12057-7_26.

HAOUCHINE, Nazim, Jeremie DEQUIDT, Igor PETERLÍK, Erwan KERRIEN, Marie-Odile BERGER and Stephane COTIN. Towards an Accurate Tracking of Liver Tumors for Augmented Reality in Robotic Assisted Surgery. In International Conference on Robotics and Automation (ICRA). Hong Kong, China: IEEE, 2014, p. 4121 - 4126. ISBN 978-1-4799-3686-1. Available from: https://dx.doi.org/10.1109/ICRA.2014.6907458.

DERVAUX, François, Igor PETERLÍK, Jérémie DEQUIDT, Stéphane COTIN and Christian DURIEZ. Haptic rendering of interacting dynamic deformable objects simulated in real-time at different frequencies. In Intelligent Robots and Systems (IROS). 2013, p. 2010-2016.

HAOUCHINE, Nazim, Jeremie DEQUIDT, Igor PETERLÍK, Erwan KERRIEN, Marie-Odile BERGER and Stephane COTIN. Image-guided Simulation of Heterogeneous Tissue Deformation For Augmented Reality during Hepatic Surgery. In ISMAR - IEEE International Symposium on Mixed and Augmented Reality 2013. IEEE, 2013, p. 199 - 208. Available from: https://dx.doi.org/10.1109/ISMAR.2013.6671780.

MOREIRA, Pedro, Igor PETERLÍK, Mark HERINK, Christian DURIEZ, Stéphane COTIN and Sarthak MISRA. Modelling Prostate Deformation: SOFA versus Experiments. Mechanical Engineering Research. 2013, vol. 3, No 2. ISSN 1927-0607.

PETERLÍK, Igor, Christian DURIEZ and Stéphane COTIN. Modeling and real-time simulation of a vascularized liver tissue. In Medical Image Computing and Computer-Assisted Intervention. Berlin Heidelberg: Springer, 2012, p. 50-57.

JIŘÍK, Radovan, Igor PETERLÍK, Nicole RUITER, Jan FOUSEK, Robin DAPP, Michael ZAPF and Jiří JAN. Sound-speed image reconstruction in sparse-aperture 3-D ultrasound transmission tomography. IEEE Transactions on Ultrasonics, Ferroelectrics and Frequency Control. 2012, vol. 59, No 2, p. 254 -264. Available from: https://dx.doi.org/10.1109/TUFFC.2012.2185.

FILIPIK, Adam, Jiří JAN and Igor PETERLÍK. Time-of-Flight Based Calibration of an Ultrasonic Computed Tomography System. Radioengineering. PRAHA: SPOLECNOST PRO RADIOELEKTRONICKE INZENYRSTVI, 2012, vol. 21, No 1, p. 533-544. ISSN 1210-2512.

PETERLÍK, Igor, Mourad NOUICER, Christian DURIEZ, Stéphane COTIN and Abderraman KHEDDAR. Constraint-based haptic rendering of multirate compliant mechanisms. In IEEE Trans. Haptics, Special Issue on Haptics in Medicine and Clinical Skill Acquisition. 2011, vol. 4, No 3, p. 175-187. ISSN 1939-1412. Available from: https://dx.doi.org/10.1109/TOH.2011.41.

PETERLÍK, Igor and Jiří FILIPOVIČ. Distributed Construction of Configuration Spaces for Real-Time Haptic Deformation Modeling. IEEE Transactions on Industrial Electronics. 2011, vol. 58, No 8, p. 3205-3212. ISSN 0278-0046. Available from: https://dx.doi.org/10.1109/TIE.2009.2032438.

FOUSEK, Jan, Tomáš GOLEMBIOVSKÝ, Jiří FILIPOVIČ and Igor PETERLÍK. Haptic Rendering Based on RBF Approximation from Dynamically Updated Data. In Luděk Matyska and Michal Kozubek and Tomáš Vojnar and Pavel Zemčík and David Antoš. Sixth Doctoral Workshop on Mathematical and Engineering Methods in Computer Science (MEMICS'10) -- Selected Papers. 16th ed. Leibniz: Schloss Dagstuhl--Leibniz-Zentrum fuer Informatik, 2011, p. 26-31. ISBN 978-3-939897-22-4.

PETERLÍK, Igor, Luděk MATYSKA and Jiří FILIPOVIČ. Haptic Interaction with Complex Models Based on Precomputations. Online. In Advances in Haptics. Vukovar (Croatia): IN-TECH, 2010, p. 333-356. ISBN 978-953-307-093-3.

FOUSEK, Jan, Tomáš GOLEMBIOVSKÝ, Jiří FILIPOVIČ and Igor PETERLÍK. Haptic Rendering Based on RBF Approximation from Dynamically Updated Data. In MEMICS 2010: Sixth Doctoral Workshop on Mathematical and Engineering Methods in Computer Science. Brno (Czech Republic): NOVPRESS, 2010, p. 53-59. ISBN 978-80-87342-10-7.

FILIPOVIČ, Jiří, Igor PETERLÍK and Matúš MADZIN. Parallel Real-time Deformation Simulator. 2010.

PETERLÍK, Igor, Mert SEDEF, Cagatay BASDOGAN and Luděk MATYSKA. Real-time visio-haptic interaction with static soft tissue models having geometric and material nonlinearity. Computers & Graphics. Elsevier, 2010, vol. 34, No 1, p. 43-54. ISSN 0097-8493.

JIRIK, Radovan, Igor PETERLÍK, Jan FOUSEK, Jiri KRATOCHVILA, Jiří JAN, Michael ZAPF and Nicole RUITER. Synthetic Aperture Focusing in 3D Ultrasound Transmission Tomography. In Proceedings of Biosignal 2010: Analysis of Biomedical Signals and Images. Brno, Czech Republic: 978-80-214-4106-4, 2010, 408 pp. ISBN 978-80-214-4106-4.

HEMZAL, Dušan, Igor PETERLÍK, Jiri JAN and Jiri ROLECEK. Experimental Simulations of Ultrasonic Field Time-Development in 3D Ultrasonic Transmission Tomography. Online. In 2009 9TH INTERNATIONAL CONFERENCE ON INFORMATION TECHNOLOGY AND APPLICATIONS IN BIOMEDICINE. New York: IEEE, 2009, p. 498-501. ISBN 978-1-4244-5378-8.

FILIPOVIČ, Jiří, Igor PETERLÍK and Jan FOUSEK. GPU Acceleration of Equations Assembly in Finite Elements Method -- Preliminary Results. In Symposium on Application Accelerators in High Performance Computing 2009. 2009.

PETERLÍK, Igor. Haptic Interaction with Non-linear Deformable Objects. Brno: Faculty of Informatics, Masaryk University, 2009, 150 pp. Ph.D. Thesis.

FILIPOVIČ, Jiří, Igor PETERLÍK and Luděk MATYSKA. On-Line Precomputation Algorithm for Real-Time Haptic Interaction with Non-Linear Deformable Bodies. In Third Joint EuroHaptics Conference and Symposium on Haptic Interfaces for Virtual Environment and Teleoperator Systems. Salt Lake City, Utah, USA: The Institute of Electrical and Electronics Engineers, 2009, p. 24 - 29. ISBN 978-1-4244-3858-7.

ROLECEK, J., Dušan HEMZAL, Igor PETERLÍK and J. JAN. Simulation of Ultrasound Parameter Distribution Influence in Ultrasonic Computed Tomography. Online. In VanderSloten, J Verdonck, P Nyssen, M Haueisen, J. 4TH EUROPEAN CONFERENCE OF THE INTERNATIONAL FEDERATION FOR MEDICAL AND BIOLOGICAL ENGINEERING. New York: Springer, 2009, p. 2483-2486. ISBN 978-3-540-89207-6. Available from: https://dx.doi.org/10.1007/978-3-540-89208-3_595.

PETERLÍK, Igor. Efficient Precomputation of Configuration Space for Haptic Deformation Modeling. In Proceedings of Conference on Human System Interactions, 2008. Krakow: IEEE Xplore, 2008, p. 225-230. ISBN 978-1-4244-1542-7.

PETERLÍK, Igor and Luděk MATYSKA. Haptic Interaction with Soft Tissues Based on State-Space Approximation. In LNCS Haptics: Perception, Devices and Scenarios. Berlin / Heidelberg: Springer, 2008, p. 886-895. ISBN 978-3-540-69056-6.

FILIPÍK, Adam, jiří JAN, Igor PETERLÍK, Dušan HEMZAL, Nicole RUITER and Radovan JIŘÍK. Modified Time-of-Flight Based Calibration Approach for Ultrasonic Computed Tomography. In Proc. of the 30th Annual International IEEE EMBS Conference. 2008th ed. Vancouver, 2008, p. 2181 - 2184. ISBN 978-1-4244-1815-2.

FILIPIK, A., J. JAN, Igor PETERLÍK, Dušan HEMZAL and R. JIRIK. Two Aspects of Calibrating a 3D Ultrasonic Computed-Tomography System. Online. In Katashev, A Dekhtyar, Y Spigulis, J. 14TH NORDIC-BALTIC CONFERENCE ON BIOMEDICAL ENGINEERING AND MEDICAL PHYSICS. NEW YORK: SPRINGER, 2008, p. 497-500. ISBN 978-3-540-69366-6. Available from: https://dx.doi.org/10.1007/978-3-540-69367-3_133.

PETERLÍK, Igor, Radovan JIŘÍK, Jiří JAN and Nicole RUITER. Ultrasound Attenuation Transmission Tomography Using Regularized Image Reconstruction. In Proc. of 19th Int. Conf. Biosignal. Brno: VUTIUM, 2008, 3 pp. ISSN 1211-412X.

PETERLÍK, Igor, Radovan JIŘÍK, Jiří JAN and Nicole RUITER. Ultrasound Attenuation Transmission Tomography Using Regularized Image Reconstruction. Analysis of Biomedical Signals and Images. 2008, vol. 19, No 1, p. 251-254. ISSN 1211-412X.

HEMZAL, Dušan, Igor PETERLÍK, Jiří ROLEČEK, Jiri JAN, Nicole RUITER and Radovan JIŘÍK. 3D Simulation of Diffraction in Ultrasonic Computed Tomography. In Proc. of the 30th Annual International IEEE EMBS Conference. 2008th ed. Vancouver, 2008, p. 454 -457. ISBN 978-1-4244-1815-2.

PETERLÍK, Igor and Luděk MATYSKA. An Algorithm of State-Space Precomputation Allowing Non-linear Haptic Deformation Modelling Using Finite Element Method. In Second Joint EuroHaprics Conference and Symposium on Haptic Interfaces for Virtual Environments and Teleoperator Systems. Los Alamitos: IEEE Computer Society Press, 2007, p. 231-236. ISBN 0-7695-2738-8.

FILIPIK, A., Igor PETERLÍK, Dušan HEMZAL and J. JAN. Calibrating an Ultrasonic Computed Tomography System Using a Time-of-Flight Based Positioning Algorithm. In Proc. 29th IEEE-EMBS Ann. Conf.2007. Lyon: IEEE, 2007, p. 2146-2149. ISBN 1-4244-0788-5.

PETERLÍK, Igor and Luděk MATYSKA. Contact Modeling in Haptic Interaction Based on Off-line Precomputation Algorithm. Simulation in Healthcare. Hagerstown: Society for Simulation in Healthcare, 2007, vol. 2, No 2, p. 146-146. ISSN 1559-2332.

PETERLÍK, Igor. Distributed Precomputation of State-space for Haptic Interaction with Non-linear Model of Liver. In MEMICS07 Third Doctoral Workshop on Mathematical and Engineering Methods in Computer Science. Brno: Ing. Zdeněk Novotný CSc., 2007, p. 169-176. ISBN 978-80-7355-077-6.

ANTOŠ, David, Igor PETERLÍK, Jiří DENEMARK and Luděk MATYSKA. Virtualizace rozsáhlé výpočetní infrastruktury (Virtualisation of Large Computation Infrastructure). In Širokopásmové sítě a jejich aplikace. Olomouc: CESNET, z. s. p. o. a Univerzita Palackého Olomouc, 2007, p. 51-54. ISBN 978-80-244-1687-8.

PETERLÍK, Igor, Radovan JIŘÍK and Nicole RUITER. Algebraic Reconstruction Technique for Ultrasound Transmission Tomography. In Proceedings of International Conference ITAB 2006. Ioannina (Greece), 2006, 6 pp.

JIŘÍK, Radovan, Igor PETERLÍK and Jiří ZAČAL. Attenuation Imaging in Ultrasound Transmission Tomography. In Analysis of Biomedical Signals and Images. Brno, 2006, p. 233-235. ISBN 80-214-3152-0.

KŘENEK, Aleš and Igor PETERLÍK. Distribuované výpočty složitých stavových prostorů (Distributed computation of complex state spaces). In Širokopásmové sítě a jejich aplikace. Olomouc: CESNET, z.s.p.o., 2005, p. 176-185. ISBN 80-244-1035-4.

PETERLÍK, Igor and Aleš KŘENEK. Haptically Driven Travelling Through Conformational Space. In First Joint EUROHAPTICS CONFERENCE and SYMPOSIUM ON HAPTIC INTERFACES FOR VIRTUAL ENVIRONMENT AND TELEOPERATOR SYSTEMS. Pisa: IEEE Computer Society, 2005, p. 342-347. ISBN 0-7695-2310-2.

JIŘÍK, Radovan and Igor PETERLÍK. Model of Radiofrequency Data Acquisition in Ultrasound Transmission Tomography. Praha, 2005, 5 pp.

KŘENEK, Aleš, Igor PETERLÍK and Luděk MATYSKA. Building 3D State Spaces of Virtual Environments with a TDS-based Algorithm (Haptic rendering of complex force fields). In Recent Advances in Parallel Virtual Machine and Message Passing Interface. Berlin: Springer-Verlag, 2003, p. 529-536. ISBN 3-540-20149-1.