Bi9061 Bioinformatics - practice

Faculty of Science
Autumn 2018
Extent and Intensity
0/2/0. 2 credit(s) (plus extra credits for completion). Type of Completion: z (credit).
Teacher(s)
doc. RNDr. Roman Pantůček, Ph.D. (seminar tutor)
prof. Mgr. Jiří Damborský, Dr. (seminar tutor)
Mgr. Ivana Mašlaňová, Ph.D. (seminar tutor)
Mgr. Petra Babková (seminar tutor)
Mgr. Pavol Bárdy (seminar tutor)
Mgr. Tomáš Buryška, Ph.D. (seminar tutor)
Ing. Klaudia Chmelová (seminar tutor)
Mgr. Adéla Indráková (seminar tutor)
Mgr. Antonín Kunka (seminar tutor)
Mgr. Jan Štourač (seminar tutor)
Mgr. Pavel Vaňáček (seminar tutor)
Mgr. Ondřej Vávra (seminar tutor)
Mgr. Michal Zeman (seminar tutor)
Mgr. Martina Damborská (assistant)
Supervisor
prof. Mgr. Jiří Damborský, Dr.
Department of Experimental Biology - Biology Section - Faculty of Science
Contact Person: prof. Mgr. Jiří Damborský, Dr.
Supplier department: Department of Experimental Biology - Biology Section - Faculty of Science
Timetable of Seminar Groups
Bi9061/01: Mon 17. 9. to Fri 14. 12. Wed 11:00–12:50 A9-316, J. Damborský, R. Pantůček
Bi9061/02: Mon 17. 9. to Fri 14. 12. Wed 13:00–14:50 A9-316, J. Damborský, R. Pantůček
Bi9061/03: Mon 17. 9. to Fri 14. 12. Wed 15:00–16:50 A9-316, J. Damborský, R. Pantůček
Prerequisites (in Czech)
( Bi5000 Bioinformatics I && Bi9060 Bioinformatics II ) || ( NOW ( Bi5000 Bioinformatics I ) && NOW ( Bi9060 Bioinformatics II )) && ! C9081 Bioinformatics
Course Enrolment Limitations
The course is also offered to the students of the fields other than those the course is directly associated with.
The capacity limit for the course is 70 student(s).
Current registration and enrolment status: enrolled: 66/70, only registered: 0/70, only registered with preference (fields directly associated with the programme): 0/70
Fields of study the course is directly associated with
there are 6 fields of study the course is directly associated with, display
Course objectives
Students will gain practical understanding of several bioinformatic databases and tools commonly used in biological and biochemical research.
Syllabus
  • 1. Bioinformatic databases
  • 2. Manipulation with sequence data
  • 3. Primer design and restriction analysis
  • 4. Pairwise sequence alignment
  • 5. Multiple sequence alignment
  • 6. Gene prediction
  • 7. Protein sequence analysis
  • 8. Preparation of nucleotide sequence for database submission
  • 9. Structure databases
  • 10. Prediction of protein structure
Literature
    recommended literature
  • CLAVERIE, Jean-Michel and Cedric NOTREDAME. Bioinformatics for dummies. 2nd ed. Hoboken, N.J.: Wiley, 2007. xviii, 436. ISBN 9780470089859. info
    not specified
  • XIONG, Jin. Essential bioinformatics. 1st pub. Cambridge: Cambridge University Press, 2006. xi, 339. ISBN 0521600820. info
  • ATTWOOD, Teresa K. and David J. PARRY-SMITH. Introduction to bioinformatics. 1st pub. Essex: Longman, 1999. xx, 218. ISBN 0582327881. info
Teaching methods
practice in computer lab
Assessment methods
Written test - practical tasks
Language of instruction
Czech
Further Comments
Study Materials
The course can also be completed outside the examination period.
The course is taught annually.
Listed among pre-requisites of other courses
Teacher's information
http://loschmidt.chemi.muni.cz/bioinf
The course is also listed under the following terms Autumn 2010 - only for the accreditation, Autumn 2008, Autumn 2009, Autumn 2010, Autumn 2011, Autumn 2011 - acreditation, Autumn 2012, Autumn 2013, Autumn 2014, Autumn 2015, Autumn 2016, autumn 2017.
  • Enrolment Statistics (recent)
  • Permalink: https://is.muni.cz/course/sci/autumn2018/Bi9061