The AtGenExpress global stress expression data set: protocols,
evaluation and model data analysis of UV-B light, drought and
cold stress responses

J 2007

The AtGenExpress global stress expression data set: protocols, evaluation and model data analysis of UV-B light, drought and cold stress responses

KILIAN, Joachim; Dion WHITEHEAD; Jakub HORÁK; Dierk WANKE; Stefan WEINL et al.

Základní údaje

Originální název

The AtGenExpress global stress expression data set: protocols, evaluation and model data analysis of UV-B light, drought and cold stress responses

Autoři

KILIAN, Joachim; Dion WHITEHEAD; Jakub HORÁK; Dierk WANKE; Stefan WEINL; Oliver BATISTIC; Cecilia D´ANGELO; Erich BORNBERG-BAUER; Jörg KUDLA a Klaus HARTER

Vydání

The Plant Journal, England, BLACKWELL PUBLISHING, 2007, 0960-7412

Další údaje

Jazyk

angličtina

Typ výsledku

Článek v odborném periodiku

Obor

Genetika a molekulární biologie

Stát vydavatele

Spojené státy

Utajení

není předmětem státního či obchodního tajemství

Odkazy

URL

Impakt faktor

Impact factor: 6.751

Kód RIV

RIV/00216224:14310/07:00035260

Organizační jednotka

Přírodovědecká fakulta

UT WoS

000245697900014

Klíčová slova anglicky

AtGenExpress; bioinformatics; gene expression; microarray; abiotic stress

Štítky

abiotic stress, AtGenExpress, bioinformatics, GENE EXPRESSION, microarray

Příznaky

Mezinárodní význam, Recenzováno

Změněno: 12. 4. 2010 08:43, Mgr. Jakub Horák, Dr. rer. nat.

Anotace

V originále

The tolerance responses of plants to many abiotic stresses are conjectured to be controlled by complex gene networks. In the frame of the AtGenExpress project a comprehensive Arabidopsis thaliana genome transcript expression study was performed using the Affymetrix ATH1 microarray in order to understand these regulatory networks in detail. In contrast to earlier studies, we subjected, side-by-side and in a high-resolution kinetic series, Arabidopsis plants, of identical genotype grown under identical conditions, to different environmental stresses comprising heat, cold, drought, salt, high osmolarity, UV-B light and wounding. Here we describe the technical performance of the experiments. We also present a general overview of environmental abiotic stress-induced gene expression patterns and the results of a model bioinformatics analysis of gene expression in response to UV-B light, drought and cold stress.

Návaznosti

MSM0021622415, záměr

Název: Molekulární podstata buněčných a tkáňových regulací

Investor: Ministerstvo školství, mládeže a tělovýchovy ČR, Molekulární podstata buněčných a tkáňových regulací

Citovat

KILIAN, Joachim; Dion WHITEHEAD; Jakub HORÁK; Dierk WANKE; Stefan WEINL; Oliver BATISTIC; Cecilia D´ANGELO; Erich BORNBERG-BAUER; Jörg KUDLA a Klaus HARTER. The AtGenExpress global stress expression data set: protocols, evaluation and model data analysis of UV-B light, drought and cold stress responses. The Plant Journal. England: BLACKWELL PUBLISHING, 2007, roč. 50, č. 2, s. 347-363. ISSN 0960-7412.

@article{825602,
   author = {Kilian, Joachim and Whitehead, Dion and Horák, Jakub and Wanke, Dierk and Weinl, Stefan and Batistic, Oliver and D´Angelo, Cecilia and BornbergandBauer, Erich and Kudla, Jörg and Harter, Klaus},
   article_location = {England},
   article_number = {2},
   keywords = {AtGenExpress; bioinformatics; gene expression; microarray; abiotic stress},
   language = {eng},
   issn = {0960-7412},
   journal = {The Plant Journal},
   title = {The AtGenExpress global stress expression data set: protocols, evaluation and model data analysis of UV-B light, drought and cold stress responses},
   url = {http://www3.interscience.wiley.com/cgi-bin/fulltext/118488525/HTMLSTART},
   volume = {50},
   year = {2007}
}

TY  - JOUR
ID  - 825602
AU  - Kilian, Joachim - Whitehead, Dion - Horák, Jakub - Wanke, Dierk - Weinl, Stefan - Batistic, Oliver - D´Angelo, Cecilia - Bornberg-Bauer, Erich - Kudla, Jörg - Harter, Klaus
PY  - 2007
TI  - The AtGenExpress global stress expression data set: protocols, evaluation and model data analysis of UV-B light, drought and cold stress responses
JF  - The Plant Journal
VL  - 50
IS  - 2
SP  - 347-363
EP  - 347-363
PB  - BLACKWELL PUBLISHING
SN  - 09607412
KW  - AtGenExpress
KW  - bioinformatics
KW  - gene expression
KW  - microarray
KW  - abiotic stress
UR  - http://www3.interscience.wiley.com/cgi-bin/fulltext/118488525/HTMLSTART
N2  - The tolerance responses of plants to many abiotic stresses are conjectured to be controlled by complex gene networks. In the frame of the AtGenExpress project a comprehensive Arabidopsis thaliana genome transcript expression study was performed using the Affymetrix ATH1 microarray in order to understand these regulatory networks in detail. In contrast to earlier studies, we subjected, side-by-side and in a high-resolution kinetic series, Arabidopsis plants, of identical genotype grown under identical conditions, to different environmental stresses comprising heat, cold, drought, salt, high osmolarity, UV-B light and wounding. Here we describe the technical performance of the experiments. We also present a general overview of environmental abiotic stress-induced gene expression patterns and the results of a model bioinformatics analysis of gene expression in response to UV-B light, drought and cold stress.
ER  -

KILIAN, Joachim; Dion WHITEHEAD; Jakub HORÁK; Dierk WANKE; Stefan WEINL; Oliver BATISTIC; Cecilia D´ANGELO; Erich BORNBERG-BAUER; Jörg KUDLA a Klaus HARTER. The AtGenExpress global stress expression data set: protocols, evaluation and model data analysis of UV-B light, drought and cold stress responses. \textit{The Plant Journal}. England: BLACKWELL PUBLISHING, 2007, roč.~50, č.~2, s.~347-363. ISSN~0960-7412.

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