The AtGenExpress global stress expression data set: protocols,
evaluation and model data analysis of UV-B light, drought and
cold stress responses

J 2007

The AtGenExpress global stress expression data set: protocols, evaluation and model data analysis of UV-B light, drought and cold stress responses

KILIAN, Joachim, Dion WHITEHEAD, Jakub HORÁK, Dierk WANKE, Stefan WEINL et. al.

Basic information

Original name

The AtGenExpress global stress expression data set: protocols, evaluation and model data analysis of UV-B light, drought and cold stress responses

Authors

KILIAN, Joachim (276 Germany), Dion WHITEHEAD (826 United Kingdom of Great Britain and Northern Ireland), Jakub HORÁK (203 Czech Republic, guarantor), Dierk WANKE (276 Germany), Stefan WEINL (276 Germany), Oliver BATISTIC (276 Germany), Cecilia D´ANGELO (380 Italy), Erich BORNBERG-BAUER (276 Germany), Jörg KUDLA (276 Germany) and Klaus HARTER (276 Germany)

Edition

The Plant Journal, England, BLACKWELL PUBLISHING, 2007, 0960-7412

Other information

Language

English

Type of outcome

Článek v odborném periodiku

Field of Study

Genetics and molecular biology

Country of publisher

United States of America

Confidentiality degree

není předmětem státního či obchodního tajemství

References:

URL

Impact factor

Impact factor: 6.751

RIV identification code

RIV/00216224:14310/07:00035260

Organization unit

Faculty of Science

UT WoS

000245697900014

Keywords in English

AtGenExpress; bioinformatics; gene expression; microarray; abiotic stress

Abstract

V originále

The tolerance responses of plants to many abiotic stresses are conjectured to be controlled by complex gene networks. In the frame of the AtGenExpress project a comprehensive Arabidopsis thaliana genome transcript expression study was performed using the Affymetrix ATH1 microarray in order to understand these regulatory networks in detail. In contrast to earlier studies, we subjected, side-by-side and in a high-resolution kinetic series, Arabidopsis plants, of identical genotype grown under identical conditions, to different environmental stresses comprising heat, cold, drought, salt, high osmolarity, UV-B light and wounding. Here we describe the technical performance of the experiments. We also present a general overview of environmental abiotic stress-induced gene expression patterns and the results of a model bioinformatics analysis of gene expression in response to UV-B light, drought and cold stress.

Links

MSM0021622415, plan (intention)

Name: Molekulární podstata buněčných a tkáňových regulací

Investor: Ministry of Education, Youth and Sports of the CR, Molecular basis of cell and tissue regulations

Citovat

KILIAN, Joachim, Dion WHITEHEAD, Jakub HORÁK, Dierk WANKE, Stefan WEINL, Oliver BATISTIC, Cecilia D´ANGELO, Erich BORNBERG-BAUER, Jörg KUDLA and Klaus HARTER. The AtGenExpress global stress expression data set: protocols, evaluation and model data analysis of UV-B light, drought and cold stress responses. The Plant Journal. England: BLACKWELL PUBLISHING, 2007, vol. 50, No 2, p. 347-363. ISSN 0960-7412.

@article{825602,
   author = {Kilian, Joachim and Whitehead, Dion and Horák, Jakub and Wanke, Dierk and Weinl, Stefan and Batistic, Oliver and D´Angelo, Cecilia and BornbergandBauer, Erich and Kudla, Jörg and Harter, Klaus},
   article_location = {England},
   article_number = {2},
   keywords = {AtGenExpress; bioinformatics; gene expression; microarray; abiotic stress},
   language = {eng},
   issn = {0960-7412},
   journal = {The Plant Journal},
   title = {The AtGenExpress global stress expression data set: protocols, evaluation and model data analysis of UV-B light, drought and cold stress responses},
   url = {http://www3.interscience.wiley.com/cgi-bin/fulltext/118488525/HTMLSTART},
   volume = {50},
   year = {2007}
}

TY  - JOUR
ID  - 825602
AU  - Kilian, Joachim - Whitehead, Dion - Horák, Jakub - Wanke, Dierk - Weinl, Stefan - Batistic, Oliver - D´Angelo, Cecilia - Bornberg-Bauer, Erich - Kudla, Jörg - Harter, Klaus
PY  - 2007
TI  - The AtGenExpress global stress expression data set: protocols, evaluation and model data analysis of UV-B light, drought and cold stress responses
JF  - The Plant Journal
VL  - 50
IS  - 2
SP  - 347-363
EP  - 347-363
PB  - BLACKWELL PUBLISHING
SN  - 09607412
KW  - AtGenExpress
KW  - bioinformatics
KW  - gene expression
KW  - microarray
KW  - abiotic stress
UR  - http://www3.interscience.wiley.com/cgi-bin/fulltext/118488525/HTMLSTART
N2  - The tolerance responses of plants to many abiotic stresses are conjectured to be controlled by complex gene networks. In the frame of the AtGenExpress project a comprehensive Arabidopsis thaliana genome transcript expression study was performed using the Affymetrix ATH1 microarray in order to understand these regulatory networks in detail. In contrast to earlier studies, we subjected, side-by-side and in a high-resolution kinetic series, Arabidopsis plants, of identical genotype grown under identical conditions, to different environmental stresses comprising heat, cold, drought, salt, high osmolarity, UV-B light and wounding. Here we describe the technical performance of the experiments. We also present a general overview of environmental abiotic stress-induced gene expression patterns and the results of a model bioinformatics analysis of gene expression in response to UV-B light, drought and cold stress.
ER  -

KILIAN, Joachim, Dion WHITEHEAD, Jakub HORÁK, Dierk WANKE, Stefan WEINL, Oliver BATISTIC, Cecilia D´ANGELO, Erich BORNBERG-BAUER, Jörg KUDLA and Klaus HARTER. The AtGenExpress global stress expression data set: protocols, evaluation and model data analysis of UV-B light, drought and cold stress responses. \textit{The Plant Journal}. England: BLACKWELL PUBLISHING, 2007, vol.~50, No~2, p.~347-363. ISSN~0960-7412.

Detailed Information on Publication Record