Publication Records

LUO, Yu, Martina LENARČIČ ŽIVKOVIC, Jiawei WANG, Jan RYNEŠ, Silvie TRANTÍRKOVÁ, Lukáš TRANTÍREK, Daniela VERGA and Jean-Louis MERGNY. A sodium/potassium switch for G4-prone G/C-rich sequences. Nucleic acids research. Oxford: Oxford University Press, 2024, vol. 52, No 1, p. 448-461. ISSN 0305-1048. Available from: https://dx.doi.org/10.1093/nar/gkad1073.

VÍŠKOVÁ, Pavlína, Eva IŠTVÁNKOVÁ, Jan RYNEŠ, Šimon DŽATKO, Tomáš LOJA, Martina LENARČIČ ŽIVKOVIC, Riccardo RIGO, Roberto EL-KHOURY, Israel SERRANO-CHACON, Masad J DAMHA, Carlos GONZALEZ, Jean-Louis MERGNY, Silvie TRANTÍRKOVÁ and Lukáš TRANTÍREK. In-cell NMR suggests that DNA i-motif levels are strongly depleted in living human cells. Nature Communications. Berlin: Nature, 2024, vol. 15, No 1, 12 pp. ISSN 2041-1723. Available from: https://dx.doi.org/10.1038/s41467-024-46221-y.

CÍGLER, Petr, Lukáš BÁLEK, Jan HAVLÍK, Pavel KREJČÍ, Lukáš TRANTÍREK and Silvie TRANTÍRKOVÁ. Nanodiamonds as artificial proteins for regulation of a cell signalling system. 2023.

CÍGLER, Petr, Lukáš BÁLEK, Jan HAVLÍK, Pavel KREJČÍ, Lukáš TRANTÍREK and Silvie TRANTÍRKOVÁ. Nanodiamonds as artificial proteins for regulation of a cell signalling system. 2023.

ŠKOLÁKOVÁ, Petra, Zahra BADRI, Silvie TRANTÍRKOVÁ, Jan RYNEŠ, Jiří ŠPONER, Miloslava FOJTOVÁ, Jiří FAJKUS, Radek MAREK, Michaela VORLÍČKOVÁ, Jean-Louis MERGNY and Lukáš TRANTÍREK. Composite 5-methylations of cytosines modulate i-motif stability in a sequence-specific manner: Implications for DNA nanotechnology and epigenetic regulation of plant telomeric DNA. BBA - General Subjects. Elsevier B.V., 2020, vol. 1864, No 9, p. 129651-129659. ISSN 0304-4165. Available from: https://dx.doi.org/10.1016/j.bbagen.2020.129651.

GREGOR, Tomáš, Michaela BOSÁKOVÁ, Alexandru NITĂ, Sara POOVAKULATHU ABRAHAM, Bohumil FAFÍLEK, Nicole ČERNOHORSKÁ, Jan RYNEŠ, Silvie TRANTÍRKOVÁ, Daniela ŽÁČKOVÁ, Jiří MAYER, Lukáš TRANTÍREK and Pavel KREJČÍ. Elucidation of protein interactions necessary for the maintenance of the BCR-ABL signaling complex. Cellular and molecular life sciences. BASEL: SPRINGER BASEL AG, 2020, vol. 77, No 19, p. 3885-3903. ISSN 1420-682X. Available from: https://dx.doi.org/10.1007/s00018-019-03397-7.

DŽATKO, Šimon, Radovan FIALA, R. HANSEL-HERTSCH, Silvie TRANTÍRKOVÁ and Lukáš TRANTÍREK. In-cell NMR Spectroscopy of Nucleic Acids. IN-CELL NMR SPECTROSCOPY: FROM MOLECULAR SCIENCES TO CELL BIOLOGY. CAMBRIDGE: ROYAL SOC CHEMISTRY, 2020, vol. 21, No 2020, p. 272-297. ISSN 2044-253X. Available from: https://dx.doi.org/10.1039/9781788013079.

KRAFČÍKOVÁ, Michaela, R. HANSEL-HERTSCH, Lukáš TRANTÍREK and Silvie TRANTÍRKOVÁ. In Cell NMR Spectroscopy: Investigation of G-Quadruplex Structures Inside Living Xenopus laevis Oocytes. G-QUADRUPLEX NUCLEIC ACIDS: METHODS AND PROTOCOLS. TOTOWA: HUMANA PRESS INC, 2019, vol. 2035, No 2019, p. 397-405. ISSN 1064-3745. Available from: https://dx.doi.org/10.1007/978-1-4939-9666-7_25.

VÍŠKOVÁ, Pavlína, Daniel KRAFČÍK, Lukáš TRANTÍREK and Silvie TRANTÍRKOVÁ. In-Cell NMR Spectroscopy of Nucleic Acids in Human Cells. Current Protocols in Nucleic Acid Chemistry. United States: Wiley-Liss Inc, 2019, vol. 76, No 1, p. 1-14. ISSN 1934-9270. Available from: https://dx.doi.org/10.1002/cpnc.71.

GIASSA, Ilektra-Chara, Jan RYNEŠ, T. FESSL, Silvie TRANTÍRKOVÁ and Lukáš TRANTÍREK. Advances in the cellular structural biology of nucleic acids. FEBS LETTERS. HOBOKEN: WILEY, 2018, vol. 592, No 12, p. 1997-2011. ISSN 1873-3468. Available from: https://dx.doi.org/10.1002/1873-3468.13054.

HARNOŠ, Jakub, Jan RYNEŠ, Pavlína VÍŠKOVÁ, Silvie TRANTÍRKOVÁ, Lola Murielle BAJARD ÉP.ESNER, Lukáš TRANTÍREK and Vítězslav BRYJA. Analysis of binding interfaces of the human scaffold protein AXIN1 by peptide microarrays. Journal of Biological Chemistry. Bethesda, USA: Amer. Soc. Biochem. Mol. Biol., 2018, vol. 293, No 42, p. 16337-16347. ISSN 0021-9258. Available from: https://dx.doi.org/10.1074/jbc.RA118.005127.

DŽATKO, Šimon, Michaela KRAFČÍKOVÁ, R. HANSEL-HERTSCH, T. FESSL, Radovan FIALA, Tomáš LOJA, Daniel KRAFČÍK, J.L. MERGNY, Silvie TRANTÍRKOVÁ and Lukáš TRANTÍREK. Evaluation of the Stability of DNA i-Motifs in the Nuclei of Living Mammalian Cells. Angewandte Chemie International Edition. WEINHEIM (GERMANY): Verlag Chemie, 2018, vol. 57, No 8, p. 2165-2169. ISSN 1433-7851. Available from: https://dx.doi.org/10.1002/anie.201712284.

BÁLEK, Lukáš, Marcela BUCHTOVÁ, Michaela BOSÁKOVÁ, Miroslav VAŘECHA, Silvie TRANTÍRKOVÁ, Iva GUDERNOVÁ, Iva VESELÁ, Jan HAVLIK, Jitka NEBURKOVA, Stuart TURNER, Mateusz Adam KRZYSCIK, Malgorzata ZAKRZEWSKA, Lars KLIMASCHEWSKI, Peter CLAUS, Lukáš TRANTÍREK, Petr CIGLER and Pavel KREJČÍ. Nanodiamonds as "artificial proteins": Regulation of a cell signalling system using low nanomolar solutions of inorganic nanocrystals. Biomaterials. OXFORD: ELSEVIER SCI LTD, 2018, vol. 176, SEP 2018, p. 106-121. ISSN 0142-9612. Available from: https://dx.doi.org/10.1016/j.biomaterials.2018.05.030.

DŽATKO, Šimon, Michaela KRAFČÍKOVÁ, Radovan FIALA, Tomáš FESSL, Tomáš LOJA, C. CARON, A. GRANZHAN, M.P. TEULADE FICHOU, J.L. MERGNY, Silvie TRANTÍRKOVÁ and Lukáš TRANTÍREK. Cellular structural biology of nucleic acids. In 42nd FEBS Congress, Jerusalem, Izrael, září 2017 in The FEBS Journal (2017). 2017. ISSN 1742-464X.

RENCIUK, D., Jan RYNEŠ, I. KEJNOVSKA, Silvie TRANTÍRKOVÁ, Michael ANDÄNG, Lukáš TRANTÍREK and M. VORLICKOVA. G-quadruplex formation in the Oct4 promoter positively regulates Oct4 expression. BIOCHIMICA ET BIOPHYSICA ACTA-GENE REGULATORY MECHANISMS. AMSTERDAM: ELSEVIER SCIENCE BV, 2017, vol. 1860, No 2, p. 175-183. ISSN 1874-9399. Available from: https://dx.doi.org/10.1016/j.bbagrm.2016.11.002.

DŽATKO, Šimon, Michaela KRAFČÍKOVÁ, Radovan FIALA, Tomáš FESSL, Tomáš LOJA, JL. MERGNY, Silvie TRANTÍRKOVÁ and TRANTÍREK. Characterization of Non-B DNA structures in complex environment of mammalian cells by in cell NMR spectroscopy. In G4thering - 6th International Meeting on Quadruplex Nucleic Acids, Praha. 2017.

KRAFČÍKOVÁ, Michaela, Šimon DŽATKO, Tomáš LOJA, Radovan FIALA, A GRANZHAN, MP. TEULADE-FICHOU, C. CARON, Silvie TRANTÍRKOVÁ and TRANTÍREK. Monitoring DNA-ligand interactions using in cell NMR spectroscopy. In G4thering - 6th International Meeting on Quadruplex Nucleic Acids, Praha. 2017.

GUDERNOVÁ, Iva, Silvie TRANTÍRKOVÁ, Barbora EL GHANNAMOVÁ, Bohumil FAFÍLEK, Miroslav VAŘECHA, Lukáš BÁLEK, Eva HRUBÁ, Lucie JONÁTOVÁ, Iva JELÍNKOVÁ, Michaela BOSÁKOVÁ, Lukáš TRANTÍREK, Jiří MAYER and Pavel KREJČÍ. One reporter for in-cell activity profiling of majority of protein kinase oncogenes. eLife. Cambridge: eLife Sciences Publications Ltd., 2017, vol. 6, "e21536", p. 1-14. ISSN 2050-084X. Available from: https://dx.doi.org/10.7554/eLife.21536.

RYNEŠ, Jan, T. FESSL, Michaela KRAFČÍKOVÁ, Lukáš TRANTÍREK and Silvie TRANTÍRKOVÁ. Structure-activity relationships in polymorphic G-quadruplex forming segment of c-MYC promoter. In 42nd Congress of the Federation-of-European-Biochemical-Societies (FEBS) on From Molecules to Cells and Back. 2017. ISSN 1742-464X.

GREGOR, Tomáš, Jan RYNEŠ, Silvie TRANTÍRKOVÁ, Jiří MAYER, Pavel KREJČÍ and Lukáš TRANTÍREK. Systematic analysis of BCR-ABL interactome in chronic myeloid leukemia. In 42nd Congress of the Federation-of-European-Biochemical-Societies (FEBS) on From Molecules to Cells and Back. 2017. ISSN 1742-464X.

ŠKOLÁKOVÁ, Petra, Silvie TRANTÍRKOVÁ, Klára BEDNÁŘOVÁ, Radovan FIALA, Michaela VORLÍČKOVÁ and Lukáš TRANTÍREK. Unique C. elegans telomeric overhang structures reveal the evolutionarily conserved properties of telomeric DNA. Nucleic Acids Research. Oxford, UK: Oxford Press, 2015, vol. 43, No 9, p. 4733-4745. ISSN 0305-1048. Available from: https://dx.doi.org/10.1093/nar/gkv296.