Výpis publikací

ZAPLETAL, Vojtěch; Nikola SALVI; Andrea FLAMM; Zuzana JASEŇÁKOVÁ; Dennis KURZBACH; Mateos BORJA; Milan ZACHRDLA; Petr PADRTA; Subhash NARASIMHAN; Thorsten MARQUARDSEN; Jean-Max TYBURN; Robert KONRAT; Lukáš ŽÍDEK; Martin BLACKLEDGE; Fabien FERRAGE a Pavel KADEŘÁVEK. Dynamics of IDPs investigated using high-resolution relaxometry. In EUROMAR 2024 – The 20th European Magnetic Resonance Congress, Bilbao, Španělsko. 2024.

BAKKER, Michael J; Amina GAFFOUR; Martin JUHÁS; Vojtěch ZAPLETAL; Jakub STOŠEK; Lars A BRATHOLM a Jana PAVLÍKOVÁ PŘECECHTĚLOVÁ. Streamlining NMR Chemical Shift Predictions for Intrinsically Disordered Proteins: Design of Ensembles with Dimensionality Reduction and Clustering. Journal of Chemical Information and Modeling. American Chemical Society, 2024, roč. 64, č. 16, s. 6542-6556. ISSN 1549-9596. Dostupné z: https://doi.org/10.1021/acs.jcim.4c00809.

KADEŘÁVEK, Pavel; Vojtěch ZAPLETAL; Nicola SALVI; Zuzana JASEŇÁKOVÁ; Milan ZACHRDLA; Petr PADRTA; Subhash NARASIMHAN; Thorsten MARQUARDSEN; Jean-Max TYBURN; Lukáš ŽÍDEK; Martin BLACKLEDGE a Fabien FERRAGE. Detailed insight into dynamics of C-terminal domain of δ subunit of RNA polymerase from Bacillus subtilis using high-resolution relaxometry. In IDP Community F2F/hybrid meeting. 2023.

ZAPLETAL, Vojtěch; Nicola SALVI; Andrea FLAMM; Zuzana JASEŇÁKOVÁ; Dennis KURZBACH; Mateos BORJA; Milan ZACHRDLA; Petr PADRTA; Subhash NARASIMHAN; Thorsten MARQUARDSEN; Jean-Max TYBURN; Jozef HRITZ; Robert KONRAT; Lukáš ŽÍDEK; Martin BLACKLEDGE; Fabien FERRAGE a Pavel KADEŘÁVEK. Detailed insight into dynamics of intrinsically disordered proteins using high-resolution relaxometry. 2023.

TUŽINČIN, Dávid; Nicola SALVI; Vojtěch ZAPLETAL; Zuzana JASEŇÁKOVÁ; Milan ZACHRDLA; Petr PADRTA; Subhash NARASIMHAN; Thorsten MARQUARDSEN; Jean-Max TYBURN; Hana ŠANDEROVÁ; Alžběta RABATINOVÁ; Kateřina BENDOVÁ; Libor KRÁSNÝ; Lukáš ŽÍDEK; Martin BLACKLEDGE; Fabien FERRAGE a Pavel KADEŘÁVEK. Study of the Dynamics of Flexible Subunits of RNA Polymerase from Bacillus subtilis. 2023.

SALVI, Nicola; Vojtěch ZAPLETAL; Zuzana JASEŇÁKOVÁ; Milan ZACHRDLA; Petr PADRTA; Subhash NARASIMHAN; Thorsten MARQUARDSEN; Jean-Max TYBURN; Lukáš ŽÍDEK; Martin BLACKLEDGE; Fabien FERRAGE a Pavel KADEŘÁVEK. Convergent views on disordered protein dynamics from NMR and computational approaches. BIOPHYSICAL JOURNAL. UNITED STATES: CELL PRESS, 2022, roč. 121, č. 20, s. 3785-3794. ISSN 0006-3495. Dostupné z: https://doi.org/10.1016/j.bpj.2022.09.016.

GAFFOUR, Amina; Vojtěch ZAPLETAL; Krishnendu BERA a Jana PAVLÍKOVÁ PŘECECHTĚLOVÁ. Multiscale NMR calculations of spin-spin couplings and the phophprylation induced chemical shifts changes in disordered proteins. In International Society of Quantum Biology and Pharmacology (ISQBP). 2022.

JASEŇÁKOVÁ, Zuzana; Vojtěch ZAPLETAL; Petr PADRTA; Milan ZACHRDLA; N. BOLIK-COULON; T. MARQUARDSEN; J.M. TYBURN; Lukáš ŽÍDEK; F. FERRAGE a Pavel KADEŘÁVEK. Boosting the resolution of low-field 15N relaxation experiments on intrinsically disordered proteins with triple-resonance NMR. Journal of biomolecular NMR. Dordrecht: Springer, 2020, roč. 74, 2-3, s. 139-145. ISSN 0925-2738. Dostupné z: https://doi.org/10.1007/s10858-019-00298-6.

ZAPLETAL, Vojtěch; Arnošt MLÁDEK; Kateřina BENDOVÁ; Petr LOUŠA; Erik NOMILNER; Zuzana JASEŇÁKOVÁ; Vojtěch KUBÁŇ; Markéta MAKOVICKÁ; Alice LANÍKOVÁ; Lukáš ŽÍDEK a Jozef HRITZ. Choice of Force Field for Proteins Containing Structured and Intrinsically Disordered Regions. Biophysical Journal. Bethesda, USA: Biophysical Society, 2020, roč. 118, č. 7, s. 1621-1633. ISSN 0006-3495. Dostupné z: https://doi.org/10.1016/j.bpj.2020.02.019.

PAVLÍKOVÁ PŘECECHTĚLOVÁ, Jana; Arnošt MLÁDEK; Vojtěch ZAPLETAL a Jozef HRITZ. Quantum Chemical Calculations of NMR Chemical Shifts in Phosphorylated Intrinsically Disordered Proteins. Journal of Chemical Theory and Computation. Washington DC: American Chemical Society, 2019, roč. 15, č. 10, s. 5642-5658. ISSN 1549-9618. Dostupné z: https://doi.org/10.1021/acs.jctc.8b00257.

MELKOVÁ, Kateřina; Vojtěch ZAPLETAL; Subhash NARASIMHAN; Séverine JANSEN; Jozef HRITZ; R. SKRABANA; M. ZWECKSTETTER; M. RINGKJOBING JENSEN; M. BLACKLEDGE a Lukáš ŽÍDEK. Structure and Functions of Microtubule Associated Proteins Tau and MAP2c: Similarities and Differences. Biomolecules. Basel, Switzerland: MDPI AG, 2019, roč. 9, č. 3, s. 105-136. ISSN 2218-273X. Dostupné z: https://doi.org/10.3390/biom9030105.

ZAPLETAL, Vojtěch; Kateřina MELKOVÁ; Séverine JANSEN; Erik NOMILNER; M.R. JENSEN; M. BLACKLEDGE a Lukáš ŽÍDEK. Conformation and dynamics of intrinsically disordered microtubule associated protein 2c. 2018. ISSN 2211-5463. Dostupné z: https://doi.org/10.1002/2211-5463.12453.

MELKOVÁ, Kateřina; Vojtěch ZAPLETAL; Séverine JANSEN; Erik NOMILNER; Milan ZACHRDLA; Jozef HRITZ; Jiří NOVÁČEK; M. ZWECKSTETTER; M.R. JENSEN; M. BLACKLEDGE a Lukáš ŽÍDEK. Functionally specific binding regions of microtubule-associated protein 2c exhibit distinct conformations and dynamics. Journal of Biological Chemistry. Bethesda, USA: Amer. Soc. Biochem. Mol. Biol., 2018, roč. 293, č. 34, s. 13297-13309. ISSN 0021-9258. Dostupné z: https://doi.org/10.1074/jbc.RA118.001769.

ZAPLETAL, Vojtěch; Arnošt MLÁDEK; Jozef HRITZ a Lukáš ŽÍDEK. Computational characterization of hybrid proteins containing ordered and intrinsically disordered regions. In 42nd Congress of the Federation-of-European-Biochemical-Societies (FEBS) on From Molecules to Cells and Back. 2017. ISSN 1742-464X.

KADEŘÁVEK, Pavel; Vojtěch ZAPLETAL; Radovan FIALA; Pavel SRB; Petr PADRTA; Jana PAVLÍKOVÁ PŘECECHTĚLOVÁ; Mária ŠOLTÉSOVÁ; Jozef KOWALEWSKI; Göran WIDMALM; Josef CHMELÍK; Vladimír SKLENÁŘ a Lukáš ŽÍDEK. Spectral density mapping at multiple magnetic fields suitable for C-13 NMR relaxation studies. Journal of Magnetic Resonance. San Diego: Academic Press Inc. Elsevier Science, 2016, roč. 266, May, s. 23-40. ISSN 1090-7807. Dostupné z: https://doi.org/10.1016/j.jmr.2016.02.016.

KADEŘÁVEK, Pavel; Vojtěch ZAPLETAL; Alžběta RABATINOVÁ; Libor KRÁSNÝ; Vladimír SKLENÁŘ a Lukáš ŽÍDEK. Spectral density mapping protocols for analysis of molecular motions in disordered proteins. Journal of Biomolecular NMR. Dordrecht: Springer, 2014, roč. 58, č. 3, s. 193-207. ISSN 0925-2738. Dostupné z: https://doi.org/10.1007/s10858-014-9816-4.

KADEŘÁVEK, Pavel; Vojtěch ZAPLETAL; Radovan FIALA; Vladimír SKLENÁŘ a Lukáš ŽÍDEK. Accurate Reduced Spectral Density Mapping for Analysis of 13C Relaxation Rates. In 53rd Experimental Nuclear Magnetic Resonance Conference. 2012.