Výpis publikací

KRÁLOVÁ, Stanislava; Lenka DAVIDOVA-GERZOVA; Adam VALCEK; Matěj BEZDÍČEK; Ivan RYCHLÍK; Veronika REZACOVA a Alois ČÍŽEK. Paraphocaeicola brunensis gen. nov., sp. nov., Carrying Two Variants of nimB Resistance Gene from Bacteroides fragilis, and Caecibacteroides pullorum gen. nov., sp. nov., Two Novel Genera Isolated from Chicken Caeca. Microbiology Spectrum. American Society for Microbiology, 2022, roč. 10, č. 1, s. 1-21. ISSN 2165-0497. Dostupné z: https://doi.org/10.1128/spectrum.01954-21.

KRÁLOVÁ, Stanislava; Lenka DAVIDOVÁ-GERŽOVA; Matej MEDVECKÝ; Ivan RYCHLÍK; Miroslav CIGÁNEK a Alois ČÍŽEK. Two novel fastidious anaerobes from the genus Bacteroides isolated from chicken gastrointestinal tracts. In 30th European Congress of Clinical Microbiology and Infectious Diseases. 2020.

MEDVECKÝ, Matej; Darina ČEJKOVÁ; Ondřej POLANSKÝ; Daniela KARASOVÁ; Tereza KUBASOVÁ; Alois ČÍŽEK a Ivan RYCHLÍK. Whole genome sequencing and function prediction of 133 gut anaerobes isolated from chicken caecum in pure cultures. BMC Genomics. London: BioMed Central Ltd, 2018. ISSN 1471-2164. Dostupné z: https://doi.org/10.1186/s12864-018-4959-4.

MEDVECKÝ, Matej; Darina ČEJKOVÁ; Ondřej POLANSKÝ a Ivan RYCHLÍK. Applying Cultureomics Followed by Whole Genome Sequencing as the First Step in Improving Chicken Health in Commercial Production. In 2nd ASM Conference on Rapid Applied Microbial Next-Generation Sequencing and Bioinformatic Pipelines. 2017.

SEKELOVÁ, Zuzana; Ondřej POLANSKÝ; Hana ŠTĚPÁNOVÁ; Radek FEDR; Marcela FALDYNOVÁ; Ivan RYCHLÍK a Lenka VLASATÍKOVÁ. Different roles of CD4, CD8 and γδ T-lymphocytes in naive and vaccinated chickens during S. Enteritidis infection. Proteomics. 2017. ISSN 1615-9861. Dostupné z: https://doi.org/10.1002/pmic.201700073.

SEKELOVÁ, Zuzana; Hana ŠTĚPÁNOVÁ; Ondřej POLANSKÝ; Karolína VARMUŽOVÁ; Marcela FALDYNOVÁ; Radek FEDR; Ivan RYCHLÍK a Lenka VLASATÍKOVÁ. Differential protein expression in chicken macrophages and heterophils in vivo following infection with Salmonella Enteritidis. Veterinary Research. 2017. ISSN 1297-9716. Dostupné z: https://doi.org/10.1186/s13567-017-0439-0.

VOLF, Jiří; Ondřej POLANSKÝ; Zuzana SEKELOVÁ; Philippe VELGE; Catherine SCHOULER; Bernd KASPERS a Ivan RYCHLÍK. Gene expression in the chicken caecum is dependent on microbiota composition. Veterinary Research. 2017. ISSN 1297-9716. Dostupné z: https://doi.org/10.1186/s13567-017-0493-7.

KUBASOVÁ, Tereza; Lenka DAVIDOVÁ GERŽOVÁ; Elodie MERLOT; Matej MEDVECKÝ; Ondřej POLANSKÝ; Delphine GARDAN-SALMON; Helene QUESNEL a Ivan RYCHLÍK. Housing Systems Influence Gut Microbiota Composition of Sows but Not of Their Piglets. PLOS ONE. Public Library of Science, 2017. ISSN 1932-6203. Dostupné z: https://doi.org/10.1371/journal.pone.0170051.

KUBASOVÁ, Tereza; Darina ČEJKOVÁ; Jitka MATIAŠOVICOVÁ; Zuzana SEKELOVÁ; Ondřej POLANSKÝ; Matej MEDVECKÝ; Ivan RYCHLÍK a Helena JUŘICOVÁ. Antibiotic resistance, core-genome and protein expression in IncHI1 plasmids in Salmonella Typhimurium. GENOME BIOLOGY AND EVOLUTION. Oxford University Press, 2016. ISSN 1759-6653. Dostupné z: https://doi.org/10.1093/gbe/evw105.

BOTKA, Tibor; Vladislava RŮŽIČKOVÁ; Hana KONEČNÁ; Roman PANTŮČEK; Ivan RYCHLÍK; Zbyněk ZDRÁHAL; Petr PETRÁŠ a Jiří DOŠKAŘ. Complete genomes of ETA-converting bacteriophages isolated from impetigo strains of Staphylococcus aureus. In Viruses of Microbes 2016 - EMBO Conference Series, Liverpool, United Kingdom. 2016.

VARMUŽOVÁ, Karolína; Tereza KUBASOVÁ; Lenka DAVIDOVÁ GERŽOVÁ; František ŠIŠÁK; Hana HAVLÍČKOVÁ; Alena ŠEBKOVÁ; Marcela FALDYNOVÁ a Ivan RYCHLÍK. Composition of gut microbiota influences resistance of newly hatched chickens to Salmonella Enteritidis infection. Frontiers in Microbiology. Lausanne (Switzerland): Frontiers Media SA, 2016, 9 s. ISSN 1664-302X. Dostupné z: https://doi.org/10.3389/fmicb.2016.00957.

SEKELOVÁ, Zuzana; Ondřej POLANSKÝ; Hana ŠTĚPÁNOVÁ; Ivan RYCHLÍK a Lenka VLASATÍKOVÁ. Characterization of proteome of chicken T lymphocytes following the infection with Salmonella Enteritidis. In International Symposium Salmonella and Salmonellosis. 2016.

VARMUŽOVÁ, Karolína; Marcela FALDYNOVA; Marta Elsheimer MATULOVA; Alena ŠEBKOVÁ; Ondřej POLANSKÝ; Hana HAVLICKOVA; Frantisek SISAK a Ivan RYCHLÍK. Immune protection of chickens conferred by a vaccine consisting of attenuated strains of Salmonella Enteritidis, Typhimurium and Infantis. Veterinary Research. 2016. ISSN 1297-9716. Dostupné z: https://doi.org/10.1186/s13567-016-0371-8.

VOLF, Jiří; Ondřej POLANSKÝ; Karolína VARMUŽOVÁ; Lenka DAVIDOVÁ GERŽOVÁ; Zuzana SEKELOVÁ; Marcela FALDYNOVÁ; Vladimír BABÁK; Matej MEDVECKÝ; Adrian SMITH; Bernd KASPERS; Philippe VELGE a Ivan RYCHLÍK. Transient and Prolonged Response of Chicken Cecum Mucosa to Colonization with Different Gut Microbiota. PLOS ONE. Public Library of Science, 2016. ISSN 1932-6203. Dostupné z: https://doi.org/10.1371/journal.pone.0163932.

VARMUŽOVÁ, Karolína; Tereza KUBASOVÁ; František ŠIŠÁK; Hana HAVLÍČKOVÁ; Marcela FALDYNOVÁ a Ivan RYCHLÍK. Use of chicken gut microbiota in a protection of newly hatched chickens against S. Enteritidis infection. In International Symposium Salmonella and Salmonellosis. 2016.

BOTKA, Tibor; Vladislava RŮŽIČKOVÁ; Hana KONEČNÁ; Roman PANTŮČEK; Ivan RYCHLÍK; Zbyněk ZDRÁHAL; Petr PETRÁŠ a Jiří DOŠKAŘ. Complete genome analysis of ETA-converting bacteriophages isolated from impetigo strains of Staphylococcus aureus. In R. Gaillyová, I. Valášková, M. Jarkovská. Týden lékařské genetiky v Brně - The Biomania Student Scientific Meeting 2015. 1. vyd. Brno: Masarykova univerzita, Brno, 2015, s. 33. ISBN 978-80-210-7933-5.

BOTKA, Tibor; Vladislava RŮŽIČKOVÁ; Hana KONEČNÁ; Roman PANTŮČEK; Ivan RYCHLÍK; Zbyněk ZDRÁHAL; Petr PETRÁŠ a Jiří DOŠKAŘ. Complete genome analysis of two new bacteriophages isolated from impetigo strains of Staphylococcus aureus. Virus Genes. Springer US, 2015, roč. 51, č. 1, s. 122-131. ISSN 0920-8569. Dostupné z: https://doi.org/10.1007/s11262-015-1223-8.

POLANSKÝ, Ondřej; Zuzana SEKELOVÁ; Marcela FALDYNOVÁ; Alena ŠEBKOVÁ; František ŠIŠÁK a Ivan RYCHLÍK. Important Metabolic Pathways and Biological Processes Expressed by Chicken Cecal Microbiota. APPLIED AND ENVIRONMENTAL MICROBIOLOGY. American Society for Microbiology, 2015. ISSN 0099-2240. Dostupné z: https://doi.org/10.1128/AEM.03473-15.

ELSHEIMER MATULOVÁ, Marta; Karolína VARMUŽOVÁ; Kamila KÝROVÁ; Hana HAVLICKOVA; Frantisek ŠIŠÁK; Masudur RAHMAN a Ivan RYCHLÍK. phoP, SPI1, SPI2 and aroA mutants of Salmonella Enteritidis induce a different immune response in chickens. VETERINARY RESEARCH. LONDON: BIOMED CENTRAL LTD, 2015, roč. 46, č. 96, 12 s. ISSN 0928-4249. Dostupné z: https://doi.org/10.1186/s13567-015-0224-x.

KUBASOVÁ, Tereza; Jitka MATIAŠOVICOVÁ; Ivan RYCHLIK a Helena JUŘICOVÁ. Complete sequence of multidrug resistance p9134 plasmid and its variants including natural recombinant with the virulence plasmid of Salmonella serovar Typhimurium. Plasmid. Thomson Scientific, 2014, roč. 76, s. 8–14. ISSN 0147-619X. Dostupné z: https://doi.org/10.1016/j.plasmid.2014.08.003.

GERŽOVÁ, Lenka; Petra VÍDEŇSKÁ; Marcela FALDYNOVÁ; Karel SEDLÁŘ; Ivo PROVAZNÍK; Alois ČÍŽEK a Ivan RYCHLIK. Characterisation of microbiota composition and antimicrobial resistance in carriage water of ornamental fish. In XXIII. Tomáškovy dny mladých mikrobiologů. 2014. ISBN 978-80-210-6805-6.

GERŽOVÁ, Lenka; Petra VÍDEŇSKÁ; Marcela FALDYNOVÁ; Karel SEDLÁŘ; Ivo PROVAZNÍK; Alois ČÍŽEK a Ivan RYCHLIK. Characterization of Microbiota Composition and Presence of Selected Antibiotic Resistance Genes in Carriage Water of Ornamental Fish. PLOS ONE. Public library of Science, 2014. ISSN 1932-6203. Dostupné z: https://doi.org/10.1371/journal.pone.0103865.

MATIAŠOVIC, Ján; Hana ŠTĚPÁNOVÁ; Hana KUDLÁČKOVÁ; Hana HAVLÍČKOVÁ; František ŠIŠÁK; Ivan RYCHLÍK; Katarína CHLEBOVÁ; Lenka LEVÁ; Alena OSVALDOVÁ; Jan GEBAUER a Martin FALDYNA. Immune response of pigs to Salmonella enterica serovar Derby and Typhimurium infections. Veterinary Microbiology. Amsterdam: Elsevier, 2014, roč. 170, 3-4, s. 284-290. ISSN 0378-1135. Dostupné z: https://doi.org/10.1016/j.vetmic.2014.02.003.

VARMUŽOVÁ, Karolína; Marta ELSHEIMER MATULOVÁ; Masudur RAHMAN; Hana HAVLÍČKOVÁ; František ŠIŠÁK a Ivan RYCHLIK. phoP, SPI1, SPI2 and aroA mutants of Salmonella Enteritidis induce a different immune response in chickens. In XXIII. Tomáškovy dny mladých mikrobiologů. 2014. ISBN 978-80-210-6805-6.

SEKELOVÁ, Zuzana; Ondřej POLANSKÝ; Hanka ŠTEPÁNOVÁ; Marta ELSHEIMER MATULOVÁ; Karolína VARMUŽOVÁ; František ŠIŠÁK; Ivan RYCHLIK a Lenka VLASATÍKOVÁ. Proteome characterization of chicken T-lymphocyte subpopulations after Salmonella Enteritidis infection. In XXIII. Tomáškovy dny mladých mikrobiologů. 2014. ISBN 978-80-210-6805-6.

VARMUŽOVÁ, Karolína; Marta ELSHEIMER MATULOVÁ; Alena ŠEBKOVÁ; Zuzana SEKELOVÁ; Hana HAVLÍČKOVÁ; František ŠIŠÁK; Vladimír BABÁK a Ivan RYCHLIK. The Early Innate Response of Chickens to Salmonella enterica Is Dependent on the Presence of O-Antigen but Not on Serovar Classification. PLOS One. San Francisco: Public Library of Science, 2014, roč. 9, č. 4, 6 s. ISSN 1932-6203. Dostupné z: https://doi.org/10.1371/journal.pone.0096116.

KÝROVÁ, Kamila; Hana ŠTĚPÁNOVÁ; Ivan RYCHLIK; Ondřej POLANSKÝ; Lenka LEVÁ; Zuzana SEKELOVÁ; Martin FALDYNA a Jiří VOLF. The response of porcine monocyte derived macrophages and dendriric cells to Salmonella Typhimurium and LPS. BMC Veterinary Research. 2014, Neuveden, č. 10, s. nestránkováno, 9 s. ISSN 1746-6148. Dostupné z: https://doi.org/10.1186/s12917-014-0244-1.

ELSHEIMER MATULOVÁ, Marta; Karolína VARMUŽOVÁ; František SISAK; Hana HAVÍČKOVÁ; Vladimír BABÁK; Karel STEJSKAL; Zbyněk ZDRÁHAL a Ivan RYCHLIK. Chicken innate immune response to oral infection with Salmonella enterica serovar Enteritidis. VETERINARY RESEARCH. LONDON: BIOMED CENTRAL LTD, 2013, roč. 44, May, s. "nestránkováno", 11 s. ISSN 0928-4249. Dostupné z: https://doi.org/10.1186/1297-9716-44-37.

VÍDEŇSKÁ, Petra; F SISAK; H HAVLICKOVA; M FALDYNOVA a Ivan RYCHLIK. Influence of Salmonella enterica serovar Enteritidis infection on the composition of chicken cecal microbiota. BMC Veterinary Research. LONDON: BIOMED CENTRAL LTD, 2013, roč. 9, 8 s. ISSN 1746-6148. Dostupné z: https://doi.org/10.1186/1746-6148-9-140.

VARMUŽOVÁ, Karolína; Marta ELSHEIMER MATULOVÁ; Zuzana SEKELOVÁ; František ŠIŠÁK; Hana HAVLÍČKOVÁ a Ivan RYCHLIK. Odpověď kuřat na infekci různými sérovary Salmonella enterica. In 26. kongres Československé společnosti mikrobiologické. 2013. ISBN 978-80-260-4507-6.

GERŽOVÁ, Lenka; Marcela FALDYNOVÁ; Petra VÍDEŇSKÁ; Alois ČÍŽEK a Ivan RYCHLIK. Prevalence antibiotické rezistence u importovaných akvarijních ryb a metagenomová analýza. In 26. kongres Československé společnosti mikrobiologické. 2013. ISBN 978-80-260-4507-6.

MATULOVÁ, Marta; Hana HAVLÍČKOVÁ; František ŠIŠÁK; Vladimír BABÁK a Ivan RYCHLIK. SPI1 defective mutants of Salmonella enterica induce cross-protective immunity in chickens against challenge with serovars Typhimurium and Enteritidis. Vaccine. 2013, roč. 31, s. 3156-3162. ISSN 0264-410X.

MATULOVÁ, Marta; Hana HAVLÍČKOVÁ; František ŠIŠÁK a Ivan RYCHLIK. Vaccination of chickens with SPI1-lon and SPI1-lon-fliC mutant of Salmonella enterica serovar Enteritidis. Plos One. 2013, roč. 8, č. 6. ISSN 1932-6203.

MATULOVÁ, Marta; Hana ŠTĚPÁNOVÁ; František ŠIŠÁK; Hana HAVLÍČKOVÁ; Marcela FALDYNOVÁ; Kamila KÝROVÁ; Jiří VOLF a Ivan RYCHLIK. Cytokine signaling in splenic leukocytes from vaccinated and non-vaccinated chickens after intravenous infection with Salmonella enteritidis. PloS ONE. 2012, roč. 7, č. 2. ISSN 1932-6203.

MATULOVÁ, Marta; Jana RÁJOVÁ; Lenka VLASATÍKOVÁ; Jiří VOLF; Hana ŠTĚPÁNOVÁ; Hana HAVLÍČKOVÁ; František ŠIŠÁK a Ivan RYCHLIK. Characterization of Chicken Spleen Transcriptome after Infection with Salmonella enterica Serovar Enteritidis. PLoS ONE. 2012, roč. 7, č. 10, s. e48101. Dostupné z: https://doi.org/10.1371/journal.pone.0048101.

VOLF, Jiří; Hana ŠTĚPÁNOVÁ; Ján MATIAŠOVIC; Kamila KÝROVÁ; František ŠIŠÁK; Hana HAVLÍČKOVÁ; Lenka LEVÁ; Martin FALDYNA a Ivan RYCHLIK. Salmonella enterica serovar Typhimurium and Enteritidis infection of pigs and cytokine signalling in palatine tonsils. VETERINARY MICROBIOLOGY. 2012, roč. 156, 1-2, s. 127-135, 8 s. ISSN 0378-1135. Dostupné z: https://doi.org/10.1016/j.vetmic.2011.10.004.

KÝROVÁ, Kamila; Hana ŠTĚPÁNOVÁ; Ivan RYCHLIK; Martin FALDYNA a Jiří VOLF. SPI-1 encoded genes of Salmonella Typhimurium influence differential polarization of porcine alveolar macrophages in vitro. BMC Veterinary Research. 2012, roč. 2012 Jul 2, 8:115, s. nestránkováno, 8 s. ISSN 1746-6148. Dostupné z: https://doi.org/10.1186/1746-6148-8-115.

MATULOVÁ, Marta; Hana HAVLÍČKOVÁ; František ŠIŠÁK a Ivan RYCHLIK. Vaccination of chickens with Salmonella Pathogenicity Island (SPI) 1 and SPI2 defective mutants of Salmonella enterica serovar Enteritidis. Vaccine. 2012, roč. 30, č. 12, s. 2090-7. ISSN 0264-410X.

KOLESÁROVÁ, Martina; Viera SPIŠÁKOVÁ; Marta MATULOVÁ; Magdaléna CRHÁNOVÁ; František ŠIŠÁK a Ivan RYCHLIK. Characterisation of basal expression of selected cytokines in the liver, spleen, and respiratory, reproductive and intestinal tract of hens. Veterinarni Medicina. 2011. ISSN 0375-8427.

CRHÁNOVÁ, Magdaléna; Helena HRADECKÁ; Marcela FALDYNOVÁ; Marta MATULOVÁ; Hana HAVLÍČKOVÁ; František ŠIŠÁK a Ivan RYCHLIK. Immune Response of Chicken Gut to Natural Colonization by Gut Microflora and to Salmonella enterica Serovar Enteritidis Infection. INFECTION AND IMMUNITY. The American Society for Microbiology, 2011, roč. 79, č. 7, s. 2755-2763. ISSN 0019-9567.

VÍDEŇSKÁ, Petra; Helena JUŘICOVÁ; M FALDYNOVÁ a Ivan RYCHLIK. Vývoj střevní mikroflóry u kuřat. In Tomáškovy dny. 2011.