Výpis publikací

CHOWDHURY, Susmita; Tamal MONDAL; Krishnendu BERA; Himal DAS; Rapti GOSWAMI; Amar GHOSH a Suman DAS. Characterization of the binding interaction of anti-malarial alkaloid cryptolepine with HSA under physiological conditions using multi-spectroscopic and molecular docking techniques. CHEMICAL PHYSICS. NETHERLANDS: ELSEVIER, 2025, roč. 599, NOV, s. 112883-112892. ISSN 0301-0104. Dostupné z: https://doi.org/10.1016/j.chemphys.2025.112883.

., Indu; Krishnendu BERA; Jozef HRITZ; Václav BRÁZDA a Rajesh KUMAR. New Insecticide Designed to Target Ecdysone Receptors of Bemisia tabaci. ACS Agricultural Science and Technology. American Chemical Society, 2025, roč. 5, č. 6, s. 1096-1104. ISSN 2692-1952. Dostupné z: https://doi.org/10.1021/acsagscitech.5c00066.

GAFFOUR, Amina; Michael BAKKER; Krishnendu BERA a Jana PAVLÍKOVÁ PŘECECHTĚLOVÁ. Reduced binding of Tau(210-240) to BIN1: Phosphate charges prefer n-Src/distal loops over RT-Src loops. BIOPHYSICAL JOURNAL. CAMBRIDGE: CELL PRESS, 2025, roč. 124, č. 21, s. 3800-3810. ISSN 0006-3495. Dostupné z: https://doi.org/10.1016/j.bpj.2025.09.037.

SUBADINI, Suchismita; Krishnendu BERA; Devi Prasanna BEHERA; Jozef HRITZ a Harekrushna SAHOO. Polyethylene Glycol-Based Refolding Kinetic Modulation of CRABP I Protein. Luminescence. HOBOKEN: Wiley, 2024, roč. 39, č. 12, s. 1-10. ISSN 1522-7235. Dostupné z: https://doi.org/10.1002/bio.4924.

LASORSA, Alessia; Krishnendu BERA; Idir MALKI; Elian DUPRE; Francois-Xavier CANTRELLE; Hamida MERZOUGUI; Davy SINNAEVE; Xavier HANOULLE; Jozef HRITZ a Isabelle LANDRIEU. Conformation and Affinity Modulations by Multiple Phosphorylation Occurring in the BIN1 SH3 Domain Binding Site of the Tau Protein Proline-Rich Region. Biochemistry. Washington: American Chemical Society, 2023, roč. 62, č. 11, s. 1631-1642. ISSN 0006-2960. Dostupné z: https://doi.org/10.1021/acs.biochem.2c00717.

BERA, Krishnendu; Isabelle LANDRIEU a Jozef HRITZ. Conformational changes upon phosphorylation of proline rich region of tau(210-240) peptide using molecular dynamic simulation. In XIX Discussions in Structural Molecular Biology and 6th User Meeting of CIISB (Czech Infrastructure for Integrative Structural Biology), Nove Hrady, South Bohemia, 23-25 March 2023. 2023.

., Indu; Jozef HRITZ; Václav BRÁZDA; Rajesh KUMAR a Krishnendu BERA. Designing of Insecticides Against Bemisia tabaci targeting ecdysone receptor. In BERA, Krishnendu. 6th Advanced in Silico Drug Design workshop/challenge, 30st January – 3rd February 2023, Faculty of Science, Palacky University, Olomouc, Czech Republic. 2023.

BERA, Krishnendu a Jozef HRITZ. Interaction of selected drugs at dimer interface of human 14-3-3ζ protein. In 6th Advanced in Silico Drug Design workshop/challenge, 30st January – 3rd February 2023, Faculty of Science, Palacky University, Olomouc, Czech Republic. 2023.

BERA, Krishnendu; Isabelle LANDRIEU; Lasorsa ALESSIA a Jozef HRITZ. Molecular dynamic simulation study of multiple phosphorylations at the proline rich region of tau(210-240) peptide. In ALESSIA, Lasorsa a Jozef HRITZ. Prague Protein Spring 2023, Prague, 4-7 May 2023. 2023. ISBN 978-80-86241-70-8.

BERA, Krishnendu; Thomas Peter FELLMETH; Alessia LASORSA; Isabelle LANDRIEU a Jozef HRITZ. Study of conformational changes of Tau(210-240) upon multiple phosphorylations using molecular dynamics simulations. In Workshop on Bioinformatics and Computational Biology. 2023. ISBN 978-80-8147-132-2.

BERA, Krishnendu. Binding and inhibitory effect of ravidasvir on 3CLpro of SARS-CoV-2: a molecular docking, molecular dynamics and MM/PBSA approach. Journal of Biomolecular Structure and Dynamics. Taylor & Francis, 2022, roč. 40, č. 16, s. 7303-7310. ISSN 0739-1102. Dostupné z: https://doi.org/10.1080/07391102.2021.1896388.

DAS, NR.; Krishnendu BERA; T. SHARMA; AP. TOROPOVA; AA. TOROPOV a PGR. ACHARY. Computational approach for building QSAR models for inhibition of HIF-1A. JOURNAL OF THE INDIAN CHEMICAL SOCIETY. INDIA: ELSEVIER, 2022, roč. 99, č. 10, s. 100687-100695. ISSN 0019-4522. Dostupné z: https://doi.org/10.1016/j.jics.2022.100687.

SUBADINI, Suchismita; Ram Sankar PANIGRAHY; Nishesh Kumar GUPTA; Krishnendu BERA a Harekrushna SAHOO. Impact of Chromate and Dichromate on Lysozyme Stability: A Spectroscopic and Molecular Docking Investigation. Luminescence. Wiley, 2022, roč. 37, č. 6, s. 876-882. ISSN 1522-7235. Dostupné z: https://doi.org/10.1002/bio.4231.

BERA, Krishnendu a Jozef HRITZ. Impact of Phosphorylation for Tau210-240 Peptide and Interaction of Small Molecules and 14-3-3ζ Protein Studies Using Computational Methods. In CEITEC PhD Conference. 2022.

GAFFOUR, Amina; Vojtěch ZAPLETAL; Krishnendu BERA a Jana PAVLÍKOVÁ PŘECECHTĚLOVÁ. Multiscale NMR calculations of spin-spin couplings and the phophprylation induced chemical shifts changes in disordered proteins. In International Society of Quantum Biology and Pharmacology (ISQBP). 2022.

BERA, Krishnendu; V. S. Jeba REEDA; P. R. BABILA; Dhurvas Chandrasekaran DINESH; Jozef HRITZ a Thangavel KARTHICK. An in silico molecular dynamics simulation study on the inhibitors of SARS-CoV-2 proteases (3CLpro and PLpro) to combat COVID-19. Molecular Simulation. Taylor & Francis Ltd, 2021, roč. 47, č. 14, s. 1168-1184. ISSN 0892-7022. Dostupné z: https://doi.org/10.1080/08927022.2021.1957884.

GAFFOUR, Amina; Jana PAVLIKOVA PRECECHTELOVA; Michael BAKKER a Krishnendu BERA. Calculation of NMR spin-spin couplings for intrinsically disordered proteins: a prospective tool to facilitate experimental NMR studies. In PAVLIKOVA PRECECHTELOVA, Jana a Michael BAKKER. 5th Users’ Conference of IT4Innovations. 2021.

BERA, Krishnendu. Molecular dynamics simulation of protein and protein-ligand complex. In International E-workshop "Machine Learning applications in Drug Discovery: Basic to Advanced”. 2021.

BERA, Krishnendu; Suchismita SUBADINI; Jozef HRITZ a Harekrushna SAHOO. Perturbing the unfolding of CRABP I using polyethylene glycol: An experimental and theoretical study. Online. In 13th EBSA congress, July 24–28, 2021, Vienna, Austria. European Biophysics Journal, Springer Nature, 2021, s. 1–226. Dostupné z: https://doi.org/10.1007/s00249-021-01558-w.

SUBADINI, Suchismita; Krishnendu BERA; Jozef HRITZ a Harekrushna SAHOO. Polyethylene glycol perturbs the unfolding of CRABP I: A correlation between experimental and theoretical approach. Colloids and Surfaces B: Biointerfaces. Elsevier, 2021, roč. 202, June, s. 111696-111705. ISSN 0927-7765. Dostupné z: https://doi.org/10.1016/j.colsurfb.2021.111696.

BERA, Krishnendu; A. LASORSA; I. MALKI; E. DUPRE; F.X. CANTRELLE; H. MERZOUGUI; D. SINNAEVE; X. HANOULLE; Jozef HRITZ a I. LANDRIEU. Study of Conformational and Dynamic Changes upon Phosphorylation of Proline Rich Region of Tau210-240 Peptide Using Molecular Dynamic Simulation. 2021.

MILLAN, S.; L. SATISH; Krishnendu BERA a H. SAHOO. Binding and inhibitory effect of the food colorants Sunset Yellow and Ponceau 4R on amyloid fibrillation of lysozyme. New Journal of Chemistry. Cambridge: ROYAL SOC. CHEMISTRY, 2019, roč. 43, č. 9, s. 3956-3968. ISSN 1144-0546. Dostupné z: https://doi.org/10.1039/c8nj05827j.

BROM, Tomáš; Zuzana TROŠANOVÁ; Petr LOUŠA; Norbert GAŠPARIK; Krishnendu BERA; Gabriel ŽOLDÁK a Jozef HRITZ. Monomer-dimer equilibria of 14-3-3ζ protein. In XVI. Discussions in Structural Molecular Biology. 2019.

BROM, Tomáš; Aneta KOZELEKOVÁ; Petr LOUŠA; Norbert GAŠPARIK; Krishnendu BERA; Gabriel ŽOLDÁK a Jozef HRITZ. Structural study of 14-3-3ζ monomeric mutant. In XIXth Workshop of Physical Chemist and Electrochemists. 2019. ISBN 978-80-210-9309-6.