Výpis publikací

MAŠKA, Martin, Ondřej DANĚK, Saray GARASA, Ana ROUZAUT, Arrate MUÑOZ-BARRUTIA a Carlos ORTIZ-DE-SOLÓRZANO. Segmentation and Shape Tracking of Whole Fluorescent Cells Based on the Chan-Vese Model. IEEE Transactions on Medical Imaging. 2013, roč. 32, č. 6, s. 995-1006. ISSN 0278-0062. Dostupné z: https://dx.doi.org/10.1109/TMI.2013.2243463.

DANĚK, Ondřej, Pavel MATULA, Martin MAŠKA a Michal KOZUBEK. Smooth Chan-Vese Segmentation via Graph Cuts. Pattern recognition letters : an official publication of the International Association for Pattern Recognition. Amsterdam: Elsevier, 2012, roč. 33, č. 10, s. 1405-1410. ISSN 0167-8655. Dostupné z: https://dx.doi.org/10.1016/j.patrec.2012.03.013.

DANĚK, Ondřej a Martin MAŠKA. A Simple Topology Preserving Max-Flow Algorithm for Graph Cut Based Image Segmentation. Online. In Sixth Doctoral Workshop on Mathematical and Engineering Methods in Computer Science (Selected Papers). Saarbrücken, Warden: Schloss Dagstuhl Publishing, 2011, s. 19-25. ISBN 978-3-939897-22-4.

DANĚK, Ondřej a Pavel MATULA. An Improved Riemannian Metric Approximation for Graph Cuts. In 16th International Conference on Discrete Geometry for Computer Imagery. Berlin, Heidelberg: Springer-Verlag, 2011, s. 71-82. ISBN 978-3-642-19866-3. Dostupné z: https://dx.doi.org/10.1007/978-3-642-19867-0_6.

STIXOVÁ, Lenka, Eva BÁRTOVÁ, Pavel MATULA, Ondřej DANĚK, Soňa LEGARTOVÁ a Stanislav KOZUBEK. Heterogeneity in the kinetics of nuclear proteins and trajectories of substructures associated with heterochromatin. Epigenetics & Chromatin. 2011, roč. 4, č. 5, s. 1-17. ISSN 1756-8935. Dostupné z: https://dx.doi.org/10.1186/1756-8935-4-5.

DANĚK, Ondřej a Pavel MATULA. On Euclidean Metric Approximation via Graph Cuts. In Computer Vision, Imaging and Computer Graphics. Theory and Applications. Berlin, Heidelberg: Springer-Verlag, 2011, s. 125-134, 11 s. ISBN 978-3-642-25381-2. Dostupné z: https://dx.doi.org/10.1007/978-3-642-25382-9_9.

MAŠKA, Martin, Pavel MATULA, Ondřej DANĚK a Michal KOZUBEK. A Fast Level Set-Like Algorithm for Region-Based Active Contours. Online. In 6th International Symposium on Visual Computing. Berlin, Heidelberg: Springer-Verlag, 2010, s. 387-396. ISBN 978-3-642-17276-2. Dostupné z: https://dx.doi.org/10.1007/978-3-642-17277-9_40.

STEJSKAL, Stanislav, Pavel MATULA, Ondřej DANĚK, Martin MAŠKA, Irena KRONTORÁD KOUTNÁ a Michal KOZUBEK. A novel approach to evaluation of the spatial relationship of fluorescent signals in ImunnoFISH analysis of different kind. In Advances in Molecular and Cancer Biology, 2010. Brno: muni PRESS, 2010, s. 39-41. ISBN 978-80-210-5312-0.

DANĚK, Ondřej a Martin MAŠKA. A Simple Topology Preserving Max-Flow Algorithm for Graph Cut Based Image Segmentation. In 6th Doctoral Workshop on Mathematical and Engineering Methods in Computer Science. Brno: NOVPRESS, 2010, s. 45-52. ISBN 978-80-87342-10-7.

MATULA, Pavel, Ondřej DANĚK, Martin MAŠKA, Marek VINKLER a Michal KOZUBEK. Acquiarium: Free Software For Image Acquisition And Image Analysis In Cytometry. In Mikroskopie 2010. 2010.

DANĚK, Ondřej a Pavel MATULA. Graph Cuts and Approximation of the Euclidean Metric on Anisotropic Grids. In VISAPP International Conference on Computer Vision Theory and Applications. Portugal: Institute for Systems and Technologies of Information, Control and Communication, 2010, s. 68-73. ISBN 978-989-674-028-3.

STEJSKAL, Stanislav, Irena KRONTORÁD KOUTNÁ, Pavel MATULA, Zdeněk RUČKA, Ondřej DANĚK, Martin MAŠKA a Michal KOZUBEK. The role of chromatin condensation during granulopoiesis in the regulation of gene cluster expression. Epigenetics. USA: Landes Bioscience, 2010, roč. 5, č. 8, s. 759-767. ISSN 1559-2294. Dostupné z: https://dx.doi.org/10.4161/epi.5.8.13183.

MAŠKA, Martin, Ondřej DANĚK, Carlos ORTIZ-DE-SOLÓRZANO, Arrate MUÑOZ-BARRUTIA, Michal KOZUBEK a Ignacio FERNÁNDEZ GARCÍA. A Two-Phase Segmentation of Cell Nuclei Using Fast Level Set-Like Algorithms. Online. In 16th Scandinavian Conference on Image Analysis. Berlin, Heidelberg: Springer-Verlag, 2009, s. 390-399. ISBN 978-3-642-02229-6. Dostupné z: https://dx.doi.org/10.1007/978-3-642-02230-2_40.

MATULA, Pavel, Ondřej DANĚK, Martin MAŠKA, Marek VINKLER a Michal KOZUBEK. Acquiarium: Free image acquisition and analysis software for image cytometry. In Analytical Cytometry V. 2009.

MATULA, Pavel, Ondřej DANĚK, Martin MAŠKA, Marek VINKLER a Michal KOZUBEK. Acquiarium: Free Software For Image Acquisition And 3D Analysis Of Fluorescently Labeled Cells. In Focus On Microscopy. 2009.

MATULA, Pavel, Martin MAŠKA, Ondřej DANĚK, Petr MATULA a Michal KOZUBEK. Acquiarium: Free Software for the Acquisition and Analysis of 3D Images of Cells in Fluorescence Microscopy. Online. In IEEE International Symposium on Biomedical Imaging. Boston: IEEE, 2009, s. 1138-1141. ISBN 978-1-4244-3932-4.

MATULA, Pavel, Martin MAŠKA, Ondřej DANĚK a Marek VINKLER. Acquiarium 2009. 2009.

DANĚK, Ondřej, Pavel MATULA, Carlos ORTIZ-DE-SOLÓRZANO, Arrate MUÑOZ-BARRUTIA, Martin MAŠKA a Michal KOZUBEK. Segmentation of Touching Cell Nuclei using a Two-Stage Graph Cut Model. In 16th Scandinavian Conference on Image Analysis. Berlin, Heidelberg: Springer-Verlag, 2009, s. 410-419. ISBN 978-3-642-02229-6. Dostupné z: https://dx.doi.org/10.1007/978-3-642-02230-2_42.

MATULA, Pavel, Ondřej DANĚK, Martin MAŠKA a Marek VINKLER. Acquiarium version 1.6. 2008.

MATULA, Pavel, Martin MAŠKA, Ondřej DANĚK, Petr MATULA, Stanislav STEJSKAL, Vladan ONDŘEJ a Michal KOZUBEK. High-Resolution Image Cytometry of a Large Number of 3D Confocal FISH and Immunofluorescence Stained Cells. In 13. LEIPZIGER WORKSHOP Cytomics and NanoBioengineering. 2008.

MATULA, Pavel, Martin MAŠKA, Ondřej DANĚK, Petr MATULA a Michal KOZUBEK. Processing of a Large Number of FISH and Immunofluorescence Stained Cells on Confocal Spinning Disk Systems. In European light microscopy initiative meeting. 2008.

MATULA, Pavel, Martin MAŠKA, Ondřej DANĚK, Petr MATULA, Michal KOZUBEK a Petr KRONTORÁD. Acquiarium 1.0. 2007.