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FI BIN Bioinformatics
Name in Czech: Bioinformatika
bachelor's full-time single-subject, language of instruction: Czech Czech
Included in the programme: FI B-BIO Bioinformatics

Introductory information / Instructions

All compulsory and selected compulsory-elective courses must be completed with at least the required form of graduation.

Společný univerzitní základ (15 kr.)

Upon successful completion of studies, students in bachelor's study programs receive 15 kr. from the subjects of the so-called Common University Foundation. These credits include 2 credits from sports activities (TV), 4 credits for a foreign language, and 9 credits for social science or natural science subjects - so-called CORE subjects.

Společensko-vědní a přírodovědný základ

Obtain at least 9 credits from courses with prefix CORE.

Languages

Mandatory to complete VB001. Compulsory choice of VB035 and VB036, or VV064.

Code Name Guarantor Type of Completion Extent and Intensity Credits Term Specialization
FI:VB001English Exam E. Rudolfovázk 0/0/01 2-
FI:VB035English Skills for IT I E. Rudolfováz 0/2/01 1-
FI:VB036English Skills for IT II E. Rudolfováz 0/2/02 2-
FI:VV064Academic and Professional Skills in English for IT E. Rudolfovázk 0/2/02+2 --
8 credits

TV

Obtain a minimum of 2 credits in physical training.

Bakalářská práce (min. 10 kr)

it is necessary to obtain 10 credits from the SBAPR course.

Code Name Guarantor Type of Completion Extent and Intensity Credits Term Specialization
FI:SBAPRBachelor Thesis D. Svobodaz 0/0/010 --
10 credits

Povinné předměty (P+PV více než 135kr.)

All compulsory and selected elective courses must be completed with at least the required form of graduation.

Code Name Guarantor Type of Completion Extent and Intensity Credits Term Specialization
FI:IB000extMathematical Foundations of Computer Science P. Hliněnýzk 2/2/14+2 1-
FI:IB113Introduction to Programming and Algorithms R. Pelánekzk 2/2/14+2 1Z
FI:IV107Bioinformatics: Sequences and Genomes M. Lexazk 2/1/02+2 3Z
FI:IV109Modeling and Simulation R. Pelánekzk 2/1/03+2 4-
FI:IV114Exercises in Bioinformatics M. Lexak 0/1/12+1 4-
FI:MB141Linear Algebra and Discrete Mathematics D. Krumlzk 2/2/03+2 2Z
FI:MB142Applied Math Analysis M. Veselýzk 2/2/03+2 3Z
FI:MB143Design and Analysis of Statistical Experiments D. Krauszk 2/2/03+2 4Z
FI:PA052Introduction to Systems Biology D. Šafránekzk 2/0/02+2 1P
FI:PA055Data Visualization for Bioinformatics M. Lexazk 1/12+2 3P
FI:PB001Introduction to Information Technologies L. Matyskazk 2/0/02+2 1Z
FI:PB007Software Engineering I M. Macákzk 2/2/03+2 5P
FI:PB050Modelling and Prediction in Systems Biology D. Šafránekzk 1/1/02+2 5P
FI:PB051Computational Methods in Bioinformatics and Systems Biology M. Lexazk 1/1/02+2 2P
FI:PB153Operating Systems and Their Interfaces J. Ráčekzk 2/0/02+2 4-
FI:PB168Introduction to DB and IS V. Dohnalzk 2/2/03+2 3P
FI:PB176Basics of Quality and Managment of Source Code L. Ručkak 2/0/13+1 6-
FI:PV225Biolab Excursion D. Šafránekk 1/2/03+1 3-
PřF:Bi4020Molecular biology J. Šmardazk 3/0/03+2 4P
PřF:C2131Introduction to bioinformatics M. Wimmerovázk 2/0/02+2 2Z
PřF:C2132Introduction to bioinformatics - seminar M. Wimmerováz 0/1/01 2-
PřF:C2133Introduction to chemoinformatics R. Svobodovázk 2/0/02+2 3P
PřF:C2144Python for bioinformaticians T. Račekzk 1/2/16 2-
PřF:C7007Biochemistry T. Kašparovskýzk 1/0/01+2 1-
PřF:C7019Biochemistry for Bioinformaticians - seminar M. Wimmerováz 0/2/02 1-
PřF:C3210Structural bioinformatics M. Wimmerovázk 1/0/01+2 5P
FI:PV119Elements of Law D. Šmídovák 2/0/02+1 --
FI:SBPripRevisions for Bachelor State Exam J. Barnatz 0/0/11 6-
FI:SOBHADefence of Thesis D. SvobodaSZk 0/0/0- 6-
FI:SZBState Exam (Bc degree) D. SvobodaSZk 0/0/0- 6-
113 credits

Selective courses

Mandatory to meet the conditions of the following blocks and at least one focus block.

Návrh algoritmů

Pass one of the courses of this block. Course C2142 is recommended for life-science-oriented students with no prior programming experience. If C2142 is selected, the seminar C2143 must also be passed.

Code Name Guarantor Type of Completion Extent and Intensity Credits Term Specialization
FI:IB114Introduction to Programming and Algorithms II I. Černázk 2/1/03+2 2-
PřF:C2142Design of algorithms in life sciences T. Račekzk 1/2/03+2 2-
PřF:C2143Design of algorithms in life sciences - seminary T. Račekz 0/1/01 2-
11 credits

Práce s operačním systémem UNIX

Pass one of the courses. Course C2110 is recommended for students with no previous experience with unix-based systems.

Code Name Guarantor Type of Completion Extent and Intensity Credits Term Specialization
PřF:C2110UNIX Operating System and Programming Basics P. Kulhánekk 0/2/02+1 3-
FI:PV004UNIX M. Brandejsk 2/0/02+1 2-
6 credits

Akademické psaní

Pass at least one course of the block.

Code Name Guarantor Type of Completion Extent and Intensity Credits Term Specialization
FI:PB029Electronic Document Preparation P. Sojkak 2/1/03+1 --
FI:VB000Elements of Style J. Plhákk 1/1/02+1 6-
FI:VB000EngIntroduction to Academic Writing E. Rudolfovák 1/1/02+1 --
10 credits

Zaměření Aplikovaná bioinformatika

Pass all courses of the selected focus.

Code Name Guarantor Type of Completion Extent and Intensity Credits Term Specialization
PřF:C9530Structure of biomacromolecules L. Žídekzk 2/0/02+2 5-
PřF:C9531Structure of biomacromolecules L. Žídekz 0/2/02 5-
PřF:C2135Bioinformatics for practice L. Malinovskák 0/2/02+1 6-
PřF:C2150Information processing and visualization in chemistry and biochemistry P. Kulhánekk 0/2/02+1 6-
PřF:C2145Structural bioinformatics in praxis R. Svobodovák 0/1/13 5-
PřF:C7170Structure and function of the cell O. Šerýzk 2/0/02+2 3-
PřF:C9088RNA & DNA sequence analysis R. Svobodovázk 1/1/02+2 6-
23 credits

Zaměření Vývoj bioinformatického software

Pass all courses of the selected focus and the courses of the choice reflecting the instructions below.

Code Name Guarantor Type of Completion Extent and Intensity Credits Term Specialization
FI:PB112Foundations of Object Oriented Programming in Java M. Trtíkzk 2/2/03+2 4-
FI:PB138Basics of Web Development and Markup Languages S. Pastvazk 2/2/03+2 6-
10 credits
volba ve výpočetních metodách

Pass at least 2 of the courses with the highest possible way of graduation.

Code Name Guarantor Type of Completion Extent and Intensity Credits Term Specialization
FI:IB031Introduction to Machine Learning T. Brázdilzk 2/2/03+2 6-
FI:PB016Introduction to Artificial Intelligence A. Horákzk 2/2/03+2 5-
FI:MA018Numerical Methods J. Zelinkazk 2/2/03+2 5-
15 credits
volba v počítačových technologiích

Obtain at least 3 credits.

Code Name Guarantor Type of Completion Extent and Intensity Credits Term Specialization
FI:PV003Relational Database System Architecture M. Batkozk 2/1/03+2 4-
FI:PV005Computer Network Services M. Brandejsz 2/0/02 3-
FI:PA039Supercomputer Architecture and Intensive Computations L. Matyskazk 2/0/02+2 6-
11 credits

Elective courses

Complete other courses of your choice so that the sum of credits obtained in total during entire study is at least 180.