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Filtrování publikací

    2023

    1. KADEŘÁVEK, Pavel, Vojtěch ZAPLETAL, Nicola SALVI, Zuzana JASEŇÁKOVÁ, Milan ZACHRDLA, Petr PADRTA, Subhash NARASIMHAN, Thorsten MARQUARDSEN, Jean-Max TYBURN, Lukáš ŽÍDEK, Martin BLACKLEDGE a Fabien FERRAGE. Detailed insight into dynamics of C-terminal domain of δ subunit of RNA polymerase from Bacillus subtilis using high-resolution relaxometry. In IDP Community F2F/hybrid meeting. 2023.
    2. ZAPLETAL, Vojtěch, Nicola SALVI, Andrea FLAMM, Zuzana JASEŇÁKOVÁ, Dennis KURZBACH, Mateos BORJA, Milan ZACHRDLA, Petr PADRTA, Subhash NARASIMHAN, Thorsten MARQUARDSEN, Jean-Max TYBURN, Jozef HRITZ, Robert KONRAT, Lukáš ŽÍDEK, Martin BLACKLEDGE, Fabien FERRAGE a Pavel KADEŘÁVEK. Detailed insight into dynamics of intrinsically disordered proteins using high-resolution relaxometry. 2023.
    3. TUŽINČIN, Dávid, Petr PADRTA, Hana ŠANDEROVÁ, Alžběta RABATINOVÁ, Kateřina BENDOVÁ, Libor KRÁSNÝ, Lukáš ŽÍDEK a Pavel KADEŘÁVEK. Domain 1.1 of σA factor of RNA polymerase from Bacillus subtilis beyond its major state conformation. In Inaugural Biochemistry Symposium Puzzles of (Bio)molecular Structure and Dynamics: NMR spectroscopy and complementary approaches. 2023.
    4. TUŽINČIN, Dávid, Petr PADRTA, Hana ŠANDEROVÁ, Alžběta RABATINOVÁ, Libor KRÁSNÝ, Lukáš ŽÍDEK a Pavel KADEŘÁVEK. Characterisation of invisible conformation of domain 1.1 of σA factor of RNA polymerase from Bacillus subtilis. In 19th European Magnetic Resonance Congress, EUROMAR 2023. 2023.
    5. TUŽINČIN, Dávid, Petr PADRTA, Hana ŠANDEROVÁ, Alžbeta RABATINOVÁ, Kateřina BENDOVÁ, Libor KRÁSNÝ, Lukáš ŽÍDEK a Pavel KADEŘÁVEK. Characterization of a transitionally occupied state and thermal unfolding of domain 1.1 of σ A factor of RNA polymerase from Bacillus subtilis. Proteins: Structure, Function and Bioinformatics. Wiley, roč. 91, č. 9, s. 1276-1287. ISSN 0887-3585. doi:10.1002/prot.26531. 2023.
    6. PAPAGEORGIOU, Anna, Michaela POSPÍŠILOVÁ, Jakub CIBULKA, Raghib ASHRAF, Christopher WAUDBY, Pavel KADEŘÁVEK, Volha MAROZ, Karel KUBÍČEK, Zbyněk PROKOP, Lumír KREJČÍ a Konstantinos TRIPSIANES. Recognition and coacervation of G-quadruplexes by a multifunctional disordered region in RECQ4 helicase. Nature Communications. Berlin: Nature, roč. 14, č. 1, s. 1-19. ISSN 2041-1723. doi:10.1038/s41467-023-42503-z. 2023.
    7. TUŽINČIN, Dávid, Nicola SALVI, Vojtěch ZAPLETAL, Zuzana JASEŇÁKOVÁ, Milan ZACHRDLA, Petr PADRTA, Subhash NARASIMHAN, Thorsten MARQUARDSEN, Jean-Max TYBURN, Hana ŠANDEROVÁ, Alžběta RABATINOVÁ, Kateřina BENDOVÁ, Libor KRÁSNÝ, Lukáš ŽÍDEK, Martin BLACKLEDGE, Fabien FERRAGE a Pavel KADEŘÁVEK. Study of the Dynamics of Flexible Subunits of RNA Polymerase from Bacillus subtilis. 2023.

    2022

    1. SALVI, Nicola, Vojtěch ZAPLETAL, Zuzana JASEŇÁKOVÁ, Milan ZACHRDLA, Petr PADRTA, Subhash NARASIMHAN, Thorsten MARQUARDSEN, Jean-Max TYBURN, Lukáš ŽÍDEK, Martin BLACKLEDGE, Fabien FERRAGE a Pavel KADEŘÁVEK. Convergent views on disordered protein dynamics from NMR and computational approaches. BIOPHYSICAL JOURNAL. UNITED STATES: CELL PRESS, roč. 121, č. 20, s. 3785-3794. ISSN 0006-3495. doi:10.1016/j.bpj.2022.09.016. 2022.
    2. TUŽINČIN, Dávid, Pavel KADEŘÁVEK, Petr PADRTA a Lukáš ŽÍDEK. Seeing the invisible – Study of transiently formed protein conformation found in domain 1.1 of bacterial transcription factor. In XVIII Discussions in Structural Molecular Biology and 5th User Meeting of CIISB (Czech Infrastructure for Integrative Structural Biology). 2022.
    3. EPASTO, Ludovica M., Kateryna CHE, Fanny KOZAK, Albina SELIMOVIC, Pavel KADEŘÁVEK a Dennis KURZBACH. Toward protein NMR at physiological concentrations by hyperpolarized water-Finding and mapping uncharted conformational spaces. Science advances. New York: American Association for the Advancement of Science, roč. 8, č. 31, s. 1-7. ISSN 2375-2548. doi:10.1126/sciadv.abq5179. 2022.

    2021

    1. WANG, Z.Q., S. PISANO, V. GHINI, Pavel KADEŘÁVEK, M. ZACHRDLA, P. PELUPESSY, M. KAZMIERCZAK, T. MARQUARDSEN, J.M. TYBURN, G. BOUVIGNIES, G. PARIGI, C. LUCHINAT a F. FERRAGE. Detection of Metabolite-Protein Interactions in Complex Biological Samples by High-Resolution Relaxometry: Toward Interactomics by NMR. Journal of the American Chemical Society. Washington: American Chemical Society, roč. 143, č. 25, s. 9393-9404. ISSN 0002-7863. doi:10.1021/jacs.1c01388. 2021.

    2020

    1. JASEŇÁKOVÁ, Zuzana, Vojtěch ZAPLETAL, Petr PADRTA, Milan ZACHRDLA, N. BOLIK-COULON, T. MARQUARDSEN, J.M. TYBURN, Lukáš ŽÍDEK, F. FERRAGE a Pavel KADEŘÁVEK. Boosting the resolution of low-field 15N relaxation experiments on intrinsically disordered proteins with triple-resonance NMR. Journal of biomolecular NMR. Dordrecht: Springer, roč. 74, 2-3, s. 139-145. ISSN 0925-2738. doi:10.1007/s10858-019-00298-6. 2020.
    2. OLSEN, G.L., O. SZEKELY, B. MATEOS, Pavel KADEŘÁVEK, F. FERRAGE, R. KONRAT, R. PIERATTELLI, I.C. FELLI, G. BODENHAUSEN, D. KURZBACH a L. FRYDMAN. Sensitivity-enhanced three-dimensional and carbon-detected two-dimensional NMR of proteins using hyperpolarized water. Journal of biomolecular NMR. Dordrecht: Springer, roč. 74, 2-3, s. 161-171. ISSN 0925-2738. doi:10.1007/s10858-020-00301-5. 2020.
    3. BOLIK-COULON, N., Pavel KADEŘÁVEK, P. PELUPESSY, J.N. DUMEZ, F. FERRAGE a S.F. COUSIN. Theoretical and computational framework for the analysis of the relaxation properties of arbitrary spin systems. Application to high-resolution relaxometry. Journal of Magnetic Resonance. San Diego: Academic Press Inc. Elsevier Science, roč. 313, APR, s. 106718-106734. ISSN 1090-7807. doi:10.1016/j.jmr.2020.106718. 2020.

    2019

    1. KADEŘÁVEK, Pavel, N. BOLIK-COULON, S.F. COUSIN, T. MARQUARDSEN, J.M. TYBURN, J.N. DUMEZ a F. FERRAGE. Protein Dynamics from Accurate Low-Field Site-Specific Longitudinal and Transverse Nuclear Spin Relaxation. Journal of Physical Chemistry Letters. Washington: American Chemical Society, roč. 10, č. 19, s. 5917-5922. ISSN 1948-7185. doi:10.1021/acs.jpclett.9b02233. 2019.
    2. BOLIK-COULON, N., A.F. COUSIN, Pavel KADEŘÁVEK, J.N. DUMEZ a F. FERRAGE. Understanding the methyl-TROSY effect over a wide range of magnetic fields. Journal of Chemical Physics. MELVILLE: American Institute of Physics, roč. 150, č. 22, s. 224202-224213. ISSN 0021-9606. doi:10.1063/1.5095757. 2019.

    2018

    1. KADEŘÁVEK, Pavel, F. FERRAGE, G. BODENHAUSEN a D. KURZBACH. High-Resolution NMR of Folded Proteins in Hyperpolarized Physiological Solvents. Chemistry - A European Journal. WEINHEIM: Wiley, roč. 24, č. 51, s. 13418-13423. ISSN 0947-6539. doi:10.1002/chem.201802885. 2018.
    2. COUSIN, S.F., Pavel KADEŘÁVEK, N. BOLIK-COULON, Y. GU, C. CHARLIER, L. GARBER, L. BRUSCHWEILER-LI, T. MARQUARDSEN, J.M. TYBURN, R. BRUSCHWEILER a F. FERRAGE. Time-Resolved Protein Side-Chain Motions Unraveled by High-Resolution Relaxometry and Molecular Dynamics Simulations. Journal of the American Chemical Society. Washington: American Chemical Society, roč. 140, č. 41, s. 13456-13465. ISSN 0002-7863. doi:10.1021/jacs.8b09107. 2018.

    2017

    1. OTRUSINOVÁ, Olga, Gabriel DEMO, Petr PADRTA, Zuzana JASEŇÁKOVÁ, Blanka PEKÁROVÁ, Zuzana GELOVÁ, Agnieszka SZMITKOWSKA, Pavel KADEŘÁVEK, Séverine JANSEN, Milan ZACHRDLA, Tomáš KLUMPLER, Jaromír MAREK, Jozef HRITZ, Lubomír JANDA, Hideo IWAI, Michaela WIMMEROVÁ, Jan HEJÁTKO a Lukáš ŽÍDEK. Conformational dynamics are a key factor in signaling mediated by the receiver domain of a sensor histidine kinase from Arabidopsis thaliana. Journal of Biological Chemistry. Bethesda, USA: Amer. Soc. Biochem. Mol. Biol., roč. 292, č. 42, s. 17525-17540. ISSN 0021-9258. doi:10.1074/jbc.M117.790212. 2017.
    2. SRB, Pavel, Jiří NOVÁČEK, Pavel KADEŘÁVEK, A. RABATINOVA, L. KRÁSNÝ, J. ŽÍDKOVÁ, J. BOBÁĽOVÁ, Vladimír SKLENÁŘ a Lukáš ŽÍDEK. Triple resonance NMR relaxation experiments for studies of intrinsically disordered proteins. Journal of Biomolecular NMR. Dordrecht: Springer, roč. 69, č. 3, s. 133-146. ISSN 0925-2738. doi:10.1007/s10858-017-0138-1. 2017.

    2016

    1. KADEŘÁVEK, Pavel, Vojtěch ZAPLETAL, Radovan FIALA, Pavel SRB, Petr PADRTA, Jana PAVLÍKOVÁ PŘECECHTĚLOVÁ, Mária ŠOLTÉSOVÁ, Jozef KOWALEWSKI, Göran WIDMALM, Josef CHMELÍK, Vladimír SKLENÁŘ a Lukáš ŽÍDEK. Spectral density mapping at multiple magnetic fields suitable for C-13 NMR relaxation studies. Journal of Magnetic Resonance. San Diego: Academic Press Inc. Elsevier Science, roč. 266, May, s. 23-40. ISSN 1090-7807. doi:10.1016/j.jmr.2016.02.016. 2016.
    2. PERCZEL, András, Atanas G. ATANASOV, Vladimír SKLENÁŘ, Jiří NOVÁČEK, Veronika PAPOUŠKOVÁ, Pavel KADEŘÁVEK, Lukáš ŽÍDEK, Henryk KOZLOWSKI, Joanna WATLY, Aleksandra HECEL, Paulina KOLKOWSKA, Jaroslav KOČA, Radka SVOBODOVÁ VAŘEKOVÁ, Lukáš PRAVDA, David SEHNAL, Vladimír HORSKÝ, Stanislav GEIDL, Ricardo D. ENRIZ, Pavel MATĚJKA, Adéla JENIŠTOVÁ, Marcela DENDISOVÁ, Alžběta KOKAISLOVÁ, Volkmar WEISSIG, Mark OLSEN, Aidan COFFEY, Jude AJUEBOR, Ruth KEARY, Marta SANZ-GAITERO, Mark J. VAN RAAIJ, Olivia MCAULIFFE, Birgit WALTENBERGER, Andrei MOCAN, Karel ŠMEJKAL, Elke H. HEISS, Marc DIEDERICH, Robert MUSIOL, Janez KOŠMRLJ, Jaroslaw POLANSKI a Josef JAMPÍLEK. The Eighth Central European Conference “Chemistry towards Biology”: Snapshot. MOLECULES. Basel: MDPI AG, roč. 21, č. 10, s. nestránkováno, 27 s. ISSN 1420-3049. doi:10.3390/molecules21101381. 2016.

    2015

    1. KADEŘÁVEK, Pavel, Sarina GRUTSCH, Nicola SALVI, Martin TOLLINGER, Lukáš ŽÍDEK, Geoffrey BODENHAUSEN a Fabien FERRAGE. Cross-correlated relaxation measurements under adiabatic sweeps: determination of local order in proteins. Journal of Biomolecular NMR. Dordrecht: Springer, roč. 63, č. 4, s. 353-365. ISSN 0925-2738. doi:10.1007/s10858-015-9994-8. 2015.

    2014

    1. KADEŘÁVEK, Pavel, Vojtěch ZAPLETAL, Alžběta RABATINOVÁ, Libor KRÁSNÝ, Vladimír SKLENÁŘ a Lukáš ŽÍDEK. Spectral density mapping protocols for analysis of molecular motions in disordered proteins. Journal of Biomolecular NMR. Dordrecht: Springer, roč. 58, č. 3, s. 193-207. ISSN 0925-2738. doi:10.1007/s10858-014-9816-4. 2014.
    2. DEMO, Gabriel, Veronika PAPOUŠKOVÁ, Jan KOMÁREK, Pavel KADEŘÁVEK, Olga OTRUSINOVÁ, Pavel SRB, Alzbeta RABATINOVA, Libor KRÁSNÝ, Lukáš ŽÍDEK, Vladimír SKLENÁŘ a Michaela WIMMEROVÁ. X-ray vs. NMR structure of N-terminal domain of delta-subunit of RNA polymerase. Journal of Structural Biology. San Diego: Academic Press, roč. 187, č. 2, s. 174-186. ISSN 1047-8477. doi:10.1016/j.jsb.2014.06.001. 2014.

    2013

    1. PAPOUŠKOVÁ, Veronika, Pavel KADEŘÁVEK, Olga OTRUSINOVÁ, Alžběta RABATINOVÁ, Hana ŠANDEROVÁ, Jiří NOVÁČEK, Libor KRÁSNÝ, Vladimír SKLENÁŘ a Lukáš ŽÍDEK. Structural Study of the Partially Disordered Full-Length delta Subunit of RNA Polymerase from Bacillus subtilis. ChemBioChem. WEINHEIM: WILEY-VCH Verlag, roč. 14, č. 14, s. 1772-1779. ISSN 1439-4227. doi:10.1002/cbic.201300226. 2013.
    2. DEMO, Gabriel, Veronika PAPOUŠKOVÁ, Jan KOMÁREK, Pavel KADEŘÁVEK, Olga OTRUSINOVÁ, Pavel SRB, Alzbeta RABATINOVA, Libor KRASNY, Lukáš ŽÍDEK, Vladimír SKLENÁŘ a Michaela WIMMEROVÁ. X ray vs. NMR structure of the N terminal domain of delta subunit of RNA polymerase. In Fifth Joint BER II and BESSY II User Meeting 2013. 2013.

    2012

    1. KADEŘÁVEK, Pavel, Vojtěch ZAPLETAL, Radovan FIALA, Vladimír SKLENÁŘ a Lukáš ŽÍDEK. Accurate Reduced Spectral Density Mapping for Analysis of 13C Relaxation Rates. In 53rd Experimental Nuclear Magnetic Resonance Conference. 2012.

    2011

    1. KADEŘÁVEK, Pavel, Carl DIEHL, Veronika PAPOUŠKOVÁ, Hana ŠANDEROVÁ, Petr PADRTA, Lukáš ŽÍDEK, Libor KRÁSNÝ, Vladimír SKLENÁŘ a Mikael AKKE. Complementation of 3D structure of delta subunit of RNA polymerase from Bacillus subtilis with description of internal motions in terms of reduced spectral density mapping. MATERIALS STRUCTURE. roč. 18, č. 1, s. 3-5. ISSN 1211-5894. 2011.
    2. PAPOUŠKOVÁ, Veronika, Pavel KADEŘÁVEK, Jiří NOVÁČEK, Lukáš ŽÍDEK a Vladimír SKLENÁŘ. NMR study of an RNA polymerase subunit unique for gram-positive bacteria. In Gordon Research Conference. 2011.
    3. PAPOUŠKOVÁ, Veronika, Pavel KADEŘÁVEK, Jiří NOVÁČEK, Petr PADRTA, Šanderová HANA, Rabatinová ALŽBĚTA, Zawadzka-Kazimierczuk ANNA, Kazimierczuk KRZYSZTOF, Lukáš ŽÍDEK, Kozminski WIKTOR, Krásný LIBOR a Vladimír SKLENÁŘ. Study of RNA polymerase delta subunit unique for gram-positive bacteria. In 9th Discussions in Structural Molecular Biology Nove Hrady. ISSN 1211-5894. 2011.

    2010

    1. KADEŘÁVEK, Pavel, Carl DIEHL, Veronika MOTÁČKOVÁ, Hana ŠANDEROVÁ, Lukáš ŽÍDEK, Libor KRÁSNÝ, Vladimír SKLENÁŘ a Mikael AKKE. ANALYSIS OF BACKBONE MOTIONS OF DELTA SUBUNIT OF RNA POLYMERASE FROM BACILLUS SUBTILIS. In 8th Discussions in Structural Molecular Biology Nove Hrady, 2010. 2010.
    2. KADEŘÁVEK, Pavel a Veronika MOTÁČKOVÁ. BACKBONE MOTIONS OF DELTA SUBUNIT OF RNA POLYMERASE FROM BACILLUS SUBTILIS ON VARIOUS TIME SCALES. In 25th Central Europen NMR meeting, NMR 2010 Valtice. 2010.
    3. MOTÁČKOVÁ, Veronika, Pavel KADEŘÁVEK, Lukáš ŽÍDEK, Hana ŠANDEROVÁ, Petr PADRTA, Jiří NOVÁČEK, Alžběta ŠVENKOVÁ, Jana KORELUSOVÁ, Anna ZAWADZKA-KAZIMIERCZUK, Krzysztof KAZIMIERCZUK, Wiktor KOŹMIŃSKI, Libor KRÁSNÝ a Vladimír SKLENÁŘ. Structure and dynamics of an RNA polymerase subunit unique for gram-positive bacteria. In Joint EUROMAR 2010 and 17th ISMAR Conference. 2010.
    4. KADEŘÁVEK, Pavel, Veronika MOTÁČKOVÁ, Petr PADRTA, Carl DIEHL, Hana ŠANDEROVÁ, Lukáš ŽÍDEK, Libor KRÁSNÝ, Vladimír SKLENÁŘ a Mikael AKKE. Structure and dynamics of delta subunit of RNA polymerase from Bacillus subtilis. In International school of biological magnetic resonance, 10th Course, Biophysics and Structure to Counter Threats and Challenges, Erice 2010. 2010.

    2009

    1. KADEŘÁVEK, Pavel, Carl DIEHL, Veronika MOTÁČKOVÁ, Lukáš ŽÍDEK, Libor KRÁSNÝ a Mikael AKKE. Backbone dynamics of N-terminal Domain of the Delta Subunit of Bacterial RNA Polymerase. In Structural Biology Network 13th Annual Conference. 2009.
    2. MACEK, Pavel, Josef CHMELÍK, Ivana KŘÍŽOVÁ, Pavel KADEŘÁVEK, Petr PADRTA, Lukáš ŽÍDEK, Marcela WILDOVÁ, Romana HADRAVOVÁ, Radka CHALOUPKOVÁ, Iva PICHOVÁ, Tomáš RUML, Michaela RUMLOVÁ a Vladimír SKLENÁŘ. NMR Structure of the N-Terminal Domain of Capsid Protein from the Mason-Pfizer Monkey Virus. Journal of Molecular Biology. roč. 392, č. 1, s. 100-114. ISSN 0022-2836. 2009.

    2008

    1. KADEŘÁVEK, Pavel a Radovan FIALA. C-13 Relaxation Studies of RNA Dynamics: Challenges and Solutions. In XXIII International Conference on Magnetic Resonance in Biological Systems. San Diego: ICMRBS. s. 117. 2008.
    2. KADEŘÁVEK, Pavel a Radovan FIALA. C-13 Relaxation Study of RNA Dynamics: Application to UUCG Hairpin Loop. In 23rd NMR Valtice. 1. vyd. Brno: Masarykova Univerzita. s. 31-31. ISBN 978-80-86441-39-9. 2008.

    2007

    1. FIALA, Radovan a Pavel KADEŘÁVEK. Effect of asymmetric shielding tensor on model-free parameters of C-13 nuclei in nucleic acid bases. In Advances and management of NMR in life sciencess. 1. vyd. Florence: University of Florence. s. 45-45. 2007.
    2. KADEŘÁVEK, Pavel a Radovan FIALA. Limits of Accuracy of RNA Dynamics Studied by Model Free Analysis of C-13 Relaxation. In 22nd NMR Valtice. 1. vyd. Brno: Masarykova Univerzita. s. 2-2. ISBN 978-80-86441-38-2. 2007.
    3. TRANTÍREK, Lukáš, Erik CAHA, Pavel KADEŘÁVEK a Radovan FIALA. NMR 13C-relaxation Study of Base and Sugar Dynamics in GCAA RNA Hairpin Tetraloop. Journal of Biomolecular Structure and Dynamics. GUILDERLAND: Adenine Press, roč. 25, č. 3, s. 307-326, 19 s. ISSN 0739-1102. 2007.

    2006

    1. FIALA, Radovan a Pavel KADEŘÁVEK. Evaluation of error in model-free parameters caused by asymmetric shielding tensor of base carbons in nucleic acids. In XXII International Conference on MagneticResonance in Biological Systems-Abstracts. 1. vyd. Gottingen: ICMRBS. s. 336-337. 2006.
    2. FIALA, Radovan a Pavel KADEŘÁVEK. The effect of chemical shift tensor asymmetry on relaxation behavior of base carbons in nucleic acid. In 21th NMR Valtice. 1. vyd. Brno: Masarykova Univerzita. s. 31-31. ISBN 80-86441-37-7. 2006.
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