Výpis publikací

HOUSER, Josef a Tomáš KLUMPLER. Bio-SAXS Practical Course 2023. 2023.

KASILIAUSKAITE, Aiste, Karel KUBÍČEK, Tomáš KLUMPLER, Martina ZÁNOVÁ, David ZAPLETAL, Eliska KOUTNA, Jiří NOVÁČEK a Richard ŠTEFL. Cooperation between intrinsically disordered and ordered regions of Spt6 regulates nucleosome and Pol II CTD binding, and nucleosome assembly. Nucleic acids research. Oxford: Oxford University Press, 2022, roč. 50, č. 10, s. 5961-5973. ISSN 0305-1048. Dostupné z: https://dx.doi.org/10.1093/nar/gkac451.

KASILIAUSKAITE, Aiste, Richard ŠTEFL, Tomáš KLUMPLER a Jiří NOVÁČEK. A Structural Basis for the Cross-Talk Between Histones and RNA Polymerase II. In CEITEC PhD Conference. 2020.

YADAV, Deepak Kumar, Dagmar ZIGÁČKOVÁ, Maria ZLOBINA, Tomáš KLUMPLER, Christelle BEAUMONT, Monika KUBÍČKOVÁ, Štěpánka VAŇÁČOVÁ a Peter LUKAVSKY. Staufen1 reads out structure and sequence features in ARF1 dsRNA for target recognition. Nucleic acids research. Oxford: Oxford University Press, 2020, roč. 48, č. 4, s. 2091-2106. ISSN 0305-1048. Dostupné z: https://dx.doi.org/10.1093/nar/gkz1163.

BRÁZDA, Pavel, Magdaléna KREJČÍKOVÁ, Aiste KASILIAUSKAITE, Eliška ŠMIŘÁKOVÁ, Tomáš KLUMPLER, Robert VÁCHA, Karel KUBÍČEK a Richard ŠTEFL. Yeast Spt6 Reads Multiple Phosphorylation Patterns of RNA Polymerase II C-Terminal Domain In Vitro. Journal of Molecular Biology. Academic Press, 2020, roč. 432, č. 14, s. 4092-4107. ISSN 0022-2836. Dostupné z: https://dx.doi.org/10.1016/j.jmb.2020.05.007.

TRČKA, Filip, Michal ĎURECH, P. VANKOVA, J. CHMELIK, Veronika VANDOVÁ, J. HAUSNER, A. KADEK, J. MARCOUX, Tomáš KLUMPLER, Bořivoj VOJTĚŠEK, P. MULLER a P. MAN. Human Stress-inducible Hsp70 Has a High Propensity to Form ATP-dependent Antiparallel Dimers That Are Differentially Regulated by Cochaperone Binding. MOLECULAR & CELLULAR PROTEOMICS. BETHESDA: AMER SOC BIOCHEMISTRY MOLECULAR BIOLOGY INC, 2019, roč. 18, č. 2, s. 320-337. ISSN 1535-9476. Dostupné z: https://dx.doi.org/10.1074/mcp.RA118.001044.

YADAV, Deepak Kumar, Dagmar ZIGÁČKOVÁ, Maria ZLOBINA, Tomáš KLUMPLER, Christelle BEAUMONT, Monika KUBÍČKOVÁ, Štěpánka VAŇÁČOVÁ a Peter LUKAVSKY. Staufen1 reads out structure and sequence features in ARF1 dsRNA for target recognition. In FEBS Congress 2019. 2019. ISSN 2211-5463.

KLUMPLER, Tomáš. BioSAXS practical course 2018. 2018.

NEČASOVÁ, Ivona, Eliška JANOUŠKOVÁ, Tomáš KLUMPLER a Ctirad HOFR. Basic domain of telomere guardian TRF2 reduces D-loop unwinding whereas Rap1 restores it. Nucleic Acids Research. 2017, roč. 45, č. 21, s. 12170-12180. ISSN 0305-1048. Dostupné z: https://dx.doi.org/10.1093/nar/gkx812.

NEČASOVÁ, Ivona, Eliška JANOUŠKOVÁ, Tomáš KLUMPLER a Ctirad HOFR. Basic domain of telomere guardian TRF2 reduces D-loop unwinding whereas Rap1 restores it (gkx812) (vol 45, pg 12170, 2017). Oxford: Oxford University Press, 2017. Dostupné z: https://dx.doi.org/10.1093/nar/gkx968.

OTRUSINOVÁ, Olga, Gabriel DEMO, Petr PADRTA, Zuzana JASEŇÁKOVÁ, Blanka PEKÁROVÁ, Zuzana GELOVÁ, Agnieszka SZMITKOWSKA, Pavel KADEŘÁVEK, Séverine JANSEN, Milan ZACHRDLA, Tomáš KLUMPLER, Jaromír MAREK, Jozef HRITZ, Lubomír JANDA, Hideo IWAI, Michaela WIMMEROVÁ, Jan HEJÁTKO a Lukáš ŽÍDEK. Conformational dynamics are a key factor in signaling mediated by the receiver domain of a sensor histidine kinase from Arabidopsis thaliana. Journal of Biological Chemistry. Bethesda, USA: Amer. Soc. Biochem. Mol. Biol., 2017, roč. 292, č. 42, s. 17525-17540. ISSN 0021-9258. Dostupné z: https://dx.doi.org/10.1074/jbc.M117.790212.

JASNOVIDOVA, Olga, Tomáš KLUMPLER, Karel KUBÍČEK, Sergei KALYNYCH, Pavel PLEVKA a Richard ŠTEFL. Structure and dynamics of the RNAPII CTDsome with Rtt103. Proceeding of the National Academy of Sciences of the USA. The Academy, 2017, roč. 114, č. 42, s. 11133-11138. ISSN 0027-8424. Dostupné z: https://dx.doi.org/10.1073/pnas.1712450114.

SEDLÁČEK, Vojtěch, Tomáš KLUMPLER, Jaromír MAREK a Igor KUČERA. Biochemical properties and crystal structure of the flavin reductase FerA from Paracoccus denitrificans. Microbiological Research. ELSEVIER GMBH, URBAN & FISCHER VERLAG, 2016, roč. 188, č. 1, s. 9-22. ISSN 0944-5013. Dostupné z: https://dx.doi.org/10.1016/j.micres.2016.04.006.

KLUMPLER, Tomáš, Tereza GERGURI, Olga JASNOVIDOVA, Lumír KREJČÍ, Karel KUBÍČEK, Daniel NĚMEČEK, Vojtěch SEDLÁČEK a Richard ŠTEFL. Biological Small Angle X-ray Scattering at CEITEC-MU. Materials Structure in Chemistry, Biology, Physics and Technology. Praha: Krystalografická společnost, 2015, roč. 22, č. 3, s. 127-132. ISSN 1211-5894.

ZEBRET, Soumalia, Eliane VÖGELE, Tomáš KLUMPLER a Josef HAMÁČEK. Designing Artificial 3D Helicates: Unprecedented Self-Assembly of Homo-octanuclear Tetrapods with Europium. Chemistry - A European Journal. Weinheim: WILEY-VCH Verlag, 2015, roč. 21, č. 18, s. 6695-6699. ISSN 0947-6539. Dostupné z: https://dx.doi.org/10.1002/chem.201500006.

NEČASOVÁ, Ivona, Tomáš KLUMPLER, Karel KUBÍČEK a Ctirad HOFR. Revisiting the role of TRF2 basic domain in chromatin maintenance with the most recent structural and functional approaches. In EMBO Workshop Telomeric chromatin and telomere fragility. 2015.

RAVANDEH, Mehdi, Libuše TRNKOVÁ a Tomáš KLUMPLER. Synthesis and characterization of ZnO nanoparticles. In Ctibor Mazal, Přemysl Lubal, Miroslava Bittová. 6th French - Czech "Vltava" Chemistry Meeting. Brno: Masarykova univerzita, 2015, s. 47- 47. ISBN 978-80-210-7934-2.

DEGTJARIK, Oksana, Radka DOPITOVÁ, Blanka PEKÁROVÁ, Tomáš KLUMPLER, Jakub HORÁK, Petra BORKOVCOVÁ, Eliška NEJEDLÁ, David ŘEHA, Sandra PUEHRINGER, Olga OTRUSINOVÁ, Séverine JANSEN, Michal KUTÝ, Manfred S. WEISS, Vladimír SKLENÁŘ, Jaromír MAREK, Veronika PAPOUŠKOVÁ, Lukáš ŽÍDEK, Ivana KUTÁ-SMATANOVÁ, Lubomír JANDA a Jan HEJÁTKO. Structural Biology in Use : NMR, X-ray and Molecular Dynamics Modeling in Study on Multistep Phosphorelay Signaling in Plants. In 6. Metodické dny. 2/2014. 2014, s. 52-52. ISSN 1213-6670.

SEDLÁČEK, Vojtěch, Tomáš KLUMPLER, Jaromír MAREK a Igor KUČERA. The Structural and Functional Basis of Catalysis Mediated by NAD(P)H:acceptor Oxidoreductase (FerB) of Paracoccus denitrificans. PLOS ONE. Public Library of Science, 2014, roč. 9, č. 5, s. 1-13. ISSN 1932-6203. Dostupné z: https://dx.doi.org/10.1371/journal.pone.0096262.

HRDINOVÁ, Vendula, Blanka PEKÁROVÁ, Tomáš KLUMPLER, Lubomír JANDA a Jan HEJÁTKO. Study of the Receiver and Receiver-like Domain Relationship in Cytokinin Receptor of Arabidopsis thaliana. In ITAT 2013: Information Technologies—Applications and Theory. 2013. ISBN 978-1-4909-5208-6.

JANSEN, Séverine, Olga TŘÍSKOVÁ, Blanka PEKÁROVÁ, Tomáš KLUMPLER, Jakub HORÁK, Radka DOPITOVÁ, Jiří NOVÁČEK, Jaromír MAREK, Jan HEJÁTKO, Lubomír JANDA, Lukáš ŽÍDEK a Vladimír SKLENÁŘ. Effect of Mg2+ Binding on the Receiver Domain of the CKI1 Sensory Histidine Kinase from Arabidopsis thaliana. Frankfurt am Main, Germany: EUROMAR, 2011, s. 325-325. ISBN 978-3-86955-845-5.

PEKÁROVÁ, Blanka, Tomáš KLUMPLER, Olga TŘÍSKOVÁ, Jakub HORÁK, Séverine JANSEN, Radka DOPITOVÁ, Petra BORKOVCOVÁ, Veronika PAPOUŠKOVÁ, Eliška NEJEDLÁ, Vladimír SKLENÁŘ, Jaromír MAREK, Lukáš ŽÍDEK, Jan HEJÁTKO a Lubomír JANDA. Structure and binding specificity of the receiver domain of sensor histidine kinase CKI1 from Arabidopsis thaliana. The Plant Journal. England: BLACKWELL PUBLISHING, 2011, roč. 67, č. 5, s. 827-839. ISSN 0960-7412. Dostupné z: https://dx.doi.org/10.1111/j.1365-313X.2011.04637.x.

KLUMPLER, Tomáš, Vojtěch SEDLÁČEK, Jaromír MAREK, Michaela WIMMEROVÁ a Igor KUČERA. Crystallization and initial X-ray diffraction studies of the flavoenzyme NAD(P)H:(acceptor) oxidoreductase (FerB) from the soil bacterium Paracoccus denitrificans. Acta crystallographica. Section F Structural biology and crystallization communications. Malden, USA: WILEY-BLACKWELL PUBLISHING, INC, 2010, F66, č. 4, s. 431-434. ISSN 1744-3091.

PEKÁROVÁ, Blanka, Tomáš KLUMPLER, Olga TŘÍSKOVÁ, Jakub HORÁK, Lukáš ŽÍDEK, Jaromír MAREK, Radka DOPITOVÁ, Jan HEJÁTKO a Lubomír JANDA. Dynamic structure and binding specifity of the receiver domain of sensor histidine kinase CKI1. Tarragona, Spain: IPGSA conference 2010, 2010, s. 85-86.

KLUMPLER, Tomáš, Jaromír MAREK, Vojtěch SEDLÁČEK a Igor KUČERA. SOLVING PHASE PROBLEM USING A SE-MET DERIVATIVE OF THE FLAVOENZYME NAD(P)H:ACCEPTOR OXIDOREDUCTASE (FERB). In Materials Structure, vol. 17, no. 1a (2010). Česká Republika: Czech and Slovak Crystallographic Association, 2010, 3 s. ISSN 1211-5894.

PEKÁROVÁ, Blanka, Tomáš KLUMPLER, Olga TŘÍSKOVÁ, Jakub HORÁK, Lukáš ŽÍDEK, Jaromír MAREK, Radka DOPITOVÁ, Jan HEJÁTKO a Lubomír JANDA. The receiver domain of sensor histidine kinase of CKI1: its dynamic structure and binding specificity. 1. vyd. Suzhou, China: Cold Spring Harbor Conferences Asia, 2010, s. 47.

KLUMPLER, Tomáš, Blanka PEKÁROVÁ, Jaromír MAREK, Petra BORKOVCOVÁ, Lubomír JANDA a Jan HEJÁTKO. Cloning, purification, crystallization and preliminary X-ray analysis of the receiver domain of the histidine kinase CKI1 from Arabidopsis thaliana. Acta Crystallographica Section F. 2009, roč. 2009, F65, s. 478-481. ISSN 1744-3091.

KLUMPLER, Tomáš, Blanka PEKÁROVÁ, Jaromir MAREK, Lubomír JANDA a Jan HEJÁTKO. Crystal structure of CKI1 receiver domain from Arabidopsis. In 7th International Conference of Ph.D Students on Experimental Plant Biology "News - what the plants told us". Brno. 2009. ISBN 978-80-7375-310-8.

KLUMPLER, Tomáš, Blanka PEKÁROVÁ, Jaromír MAREK, Pavla BORKOVCOVÁ, Lubomír JANDA a Jan HEJÁTKO. Crystal structure of the receiver domain of the histidine kinase CKI1 from Arabidopsis thaliana. In Kolokvium - Struktura 2009. 2009. ISSN 1211-5894.

KLUMPLER, Tomáš, Blanka PEKÁROVÁ, Marek MAREK, Petra BORKOVCOVÁ, Lubomír JANDA a Jan HEJÁTKO. CRYSTALLIZATION AND X-RAY ANALYSIS OF THE RECEIVER DOMAIN OF THE HISTIDINE KINASE CKI1 FROM ARABIDOPSIS THALIANA. In Auxins and Cytokinins in Plant Development International symposium (ACPD 2009). 2009.

MAREK, Jaromír, Tomáš KLUMPLER, Blanka PEKÁROVÁ, Petra BORKOVCOVÁ, Jan HEJÁTKO a Lubomír JANDA. Structure of CKI1RD, the receiver domain of the histidine kinase CKI1 from Arabidopsis thaliana. In XXI Congress and Assembly of the International Union of Crystallography (IUCr2008) - Book of Abstracts. 2008. ISSN 0108-7673.