Výpis publikací

VAŘECHA, Miroslav, Michal ZIMMERMANN, Jana AMRICHOVÁ, Vladimír ULMAN, Pavel MATULA a Michal KOZUBEK. Prediction of localization and interactions of apoptotic proteins. Journal of Biomedical Science. BioMed website: BioMed Central, London, England, 2009, roč. 16, č. 59, s. 1-14. ISSN 1021-7770.

MATULA, Petr, Anil KUMAR, Ilka WÖRZ, Holger ERFLE, Ralf BARTENSCHLAGER, Roland EILS a Karl ROHR. Single-cell-based image analysis of high-throughput cell array screens for quantification of viral infection. Cytometry Part A. UNITED STATES: John Wiley & Sons, Inc., 2009, roč. 75A, č. 4, s. 309-318. ISSN 1552-4922.

ZIMMERMANN, Michal, Miroslav VAŘECHA, Jana AMRICHOVÁ, Vladimír ULMAN, Pavel MATULA a Michal KOZUBEK. Bioinformatic prediction, molecular modelling and image analysis of localization and interactions of apoptotic proteins endonuclease G, AIF, and AMID. In Apoptosis World 2008. 2008.

JANOUŠOVÁ, Eva a Daniel SCHWARZ. Comparison Of Brain Tissue Classification Algorithms With The Use Of Multimodal Efficiency Measure. In Analysis of Biomedical Signals and Images - Proceedings of 19th Biennal International Eurasip Conference BIOSIGNAL 2008. Brno: VUTIUM Press, 2008, s. 1-4. ISBN 978-80-214-3612-1.

VAŘECHA, Miroslav, Jana AMRICHOVÁ, Michal ZIMMERMANN, Vladimír ULMAN a Michal KOZUBEK. Image analysis of localization and translocation of apoptotic proteins in living cells. In European Light Microscopy Initiative. 2008.

VAŘECHA, Miroslav, Michal ZIMMERMANN, Jana AMRICHOVÁ, Vladimír ULMAN a Michal KOZUBEK. Interactions of apoptotic proteins AIF and endonuclease G analyzed by bioinformatic predictions, molecular docking, and fluorescent microscopy. In 16th Euroconference on Apoptosis an 5th Swiss Apoptosis Meeting. 2008.

VAŘECHA, Miroslav, Pavel MATULA a Michal KOZUBEK. New approaches to automated cell image acquisition and analysis using fluorescence microscopy. In XIX. Biologické Dny - International Symposium "The Functional Organization of the Cell Nucleus". 2008. ISBN 978-80-7399-545-4.

SCHWARZ, Daniel a Tomáš KAŠPÁREK. Spatial Deformation Model With The Use Of Wavelet Thresholding For Nonlinear Multimodal Registration. In Analysis of Biomedical Signals and Images - Proceedings of 19th Biennal International Eurasip Conference BIOSIGNAL 2008. Brno: VUTIUM Press, 2008, s. 1-3. ISBN 978-80-214-3612-1.

STEJSKAL, Stanislav, Pavel MATULA, Irena KOUTNÁ, Ondřej DANĚK, Martin MAŠKA a Michal KOZUBEK. The Use of RNA Polymerase II in Epigenetic Analysis. In 3rd EFS Functional Genomics Conference 2008. 2008.

KOZUBEK, Michal. Automation of biomedical image acquisition and analysis in optical microscopy. In Seminar of the Centre for Image Analysis. 2007.

VAŘECHA, Miroslav, Jana AMRICHOVÁ, Michal ZIMMERMANN, Vladimír ULMAN, Emilie LUKÁŠOVÁ a Michal KOZUBEK. Bioinformatic and image analyses of cellular localization of apoptotic proteins endonuclease G, AIF, and AMID. In Symposium "Structure and Function of Cell Nucleus". 2007.

SCHWARZ, Daniel a Tomáš KAŠPÁREK. Brain Tissue Classification with Automated Generation of Training Data Improved by Deformable Registration. W.G.Kropatsch, M. Kampel, A. Hanbury (Eds.). In LECTURE NOTES IN COMPUTER SCIENCE. Berlin, Heidelberg: Springer-Verlag, 2007, s. 301-308. ISBN 978-3-540-74271-5.

SKALNÍKOVÁ, Magdalena, Eva BÁRTOVÁ, Vladimír ULMAN, Petr MATULA, David SVOBODA, Andrea HARNIČAROVÁ, Michal KOZUBEK a Stanislav KOZUBEK. Distinct patterns of histone methylation and acetylation in human interphase nuclei. Physiological Research. Prague: Czech Academy of Sciences, 2007, roč. 56, č. 6, s. 797-806. ISSN 0862-8408.

VAŘECHA, Miroslav, Jana AMRICHOVÁ, Michal ZIMMERMANN, Vladimír ULMAN, Marek KAŠÍK a Michal KOZUBEK. Fluorescent microscopy of living cells. In Analytical Cytometry IV: Book of Abstracts. 2007. ISBN 978-80-239-9591-6.

ADAM, Vojtěch, JIří BALOUN a Václav DIOPAN. Vyuziti analyzy obrazu, nuklearni magneticke rezonance a Brdickovy reakce pro studium vlivu tezkych kovu na embryonalni smrkove kultury. In Chemické zvesti. Slovenská republika: Institute of Chemistry Slovak Acedemy of Science, Bratislava, Slovak Chemical Society, Bratislava, 2007, s. 167-169. ISBN nebylo přiděleno.

KOZUBEK, Michal. Automated analysis of multi-dimensional biomedical image data acquired using optical microscopy. Ed. R. Lechnerová, I. Saxl, V. Beneš. In Proceedings of the 6th International Conference on Stereology, Spatial Statistics and Stochastic Geometry. Prague: Union of Czech Mathematicians and Physicists, 2006, s. 465-476. ISBN 80-7015-037-8.

KOZUBEK, Michal. Automated analysis of multi-dimensional biomedical image data acquired using optical microscopy. In 6th International Conference on Stereology, Spatial Statistics and Stochastic Geometry. 2006.

ULMAN, Vladimír. Automatic Detection of Histones on Chromosome X in Images of Cell Nuclei. Clinician and Technology (Lékař a technika). Praha: Czech Medical Association J.E.Purkyne, 2006, roč. 36, č. 2, s. 160-164. ISSN 0301-5491.

VAŘECHA, Miroslav, Jana AMRICHOVÁ, Michal ZIMMERMANN, Vladimír ULMAN, Pavel MATULA, Petr MATULA a Michal KOZUBEK. Single-cell image analysis of cellular localization and colocalization of endonuclease G, AIF and AMID in living cells. In Book of Abstracts for 14th Euroconference on Apoptosis. 2006.

SVOBODA, David, Ian WILLIAMS, Nicholas BOWRING a Elizabeth GUEST. Statistical techniques for edge detection in histological images. In First International Conference on Computer Vision Theory and Applications. Portugalsko: INSTICC Press, 2006, s. 457-462. ISBN 972-8865-40-6.

BÁBEK, Ondrej. Thermal maturity of the Palaeozoic Moravo-Silesian Basin: a digital image analysis approach to conodont colour alteration index (CAI). Geophysical Research Abstracts. European Geosciences Union, 2006, roč. 8, č. 1, s. EGU06-A-04037, 1 s. ISSN 1029-7006.

KOZUBEK, Michal, Pavel MATULA, Petr MATULA a David SVOBODA. Analysis of biomedical image data acquired using optical microscopy. In 1st International Summer School on Computational Biology. 2005.

KOZUBEK, Michal, Pavel MATULA, Petr MATULA a David SVOBODA. Analysis of biomedical image data acquired using optical microscopy. In DUŠEK, Ladislav, Jiří HŘEBÍČEK a Jiří JARKOVSKÝ. Proceedings of the 1st International Summer School on Computational Biology. Brno: Masaryk University, 2005, s. 21-28. ISBN 80-210-3907-8.

KOZUBEK, Michal, Pavel MATULA, Petr MATULA a David SVOBODA. Analysis of biomedical image data acquired using optical microscopy. In Prague Post Genome Technology Workshop. Prague, Czech Republic: Czech Pattern Recognition Society, 2005, s. 24-27. ISBN 80-01-03239-6.

NOVY, Jindrich, Pavlina BECVAROVA, Jirina SKORPIKOVA, Vojtech MORNSTEIN a Roman JANISCH. Discrete Fourier transform-based analysis of HeLa cell microtubules after ultrasonic exposure. Microscopy Reasearch Technique. Wiley-Liss, 2005, roč. 68, č. 1, s. 1-5. ISSN 1059-910X.

URBANOVÁ, Petra a Vladimír NOVOTNÝ. Distinguishing between Human and Non-human bones: Histometric metod for forensic antropology. Anthropologie. 2005, XLIII, č. 1, s. 77-85, 8 s. ISSN 0323-1119.

KOZUBEK, Michal, Petr MATULA, Pavel MATULA, David SVOBODA, Jan HUBENÝ a Petr KRONTORÁD. Automated image analysis in fluorescence microscopy: From isolated cells to tissues and microarray images. In Biophysics of the Genome. First Edition 2004. Brno: Masaryk University, 2004, s. 44-46. ISBN 80-210-3560-9.

MORNSTEIN, Vojtěch, Pavlína BEČVÁŘOVÁ, Jindřich NOVÝ, Jiřina ŠKORPÍKOVÁ a Roman JANISCH. How to evaluate the cytoskeletal response to the action of ultrasound? Liječnički Vjesnik. Zagreb: Hrvatski Liječnički Zbor, 2004, roč. 126, Supp. 2, s. 168-168. ISSN 1330-4917.

SULOVSKÝ, Petr, Theodor STANĚK a Václav VÁVRA. Modal analysis of clinker: solutions and constraints. Berichte der Deutschen Mineralogischen Gesellschaft - Beihefte zum European Journal of Mineralogy. Stuttgart: Nägele u. Obermiller, 2004, roč. 16, č. 1, s. 138-138. ISSN 0935-123X.

PETŘEK, Jiří, Helena VLAŠÍNOVÁ, Ladislav HAVEL, Vojtěch ADAM, Petr BABULA, Jan VÍTEČEK, David POTĚŠIL a René KIZEK. Organizace embryí ve shlucích raných somatických embryí smrku ztepilého (Picea abies (L.) Karst.). In MendelNet04 Agro. Brno: Mendelova zemědělská a lesnická univerzita v Brně, 2004, s. 104-109, 124 s. ISBN 80-7157-813-4.

DUBOVÝ, Petr. POKROKY V ZÁKLADNÍ, APLIKOVANÉ A DIAGNOSTICKÉ HISTOCHEMII. 2004.

MATULA, Pavel, Michal KOZUBEK, Stanislav KOZUBEK a Vladan ONDŘEJ. Rapid Image Acquisition of Living Cells and its Limits. In Biophysics of the Genome. Brno, Czech Republic: Masaryk University, 2004, s. 58-61. ISBN 80-210-3560-9.

BRABEC, Kamil. Uchovávání obrazových dat. In XXVII. Dny lékařské biofyziky. Hradec Králové, 2004.

KOZUBEK, Michal, Petr MATULA, Pavel MATULA a Petr MEJZLÍK. A network solution for high-resolution image cytometry. In Biophysics of the Genome. Brno: Masaryk University, 2003, s. 30-36. ISBN 80-210-3226-X.

NOVÝ, Jindřich, Jan TOMÁŠ a Roman JANISCH. Adaptive methods of cytoskeleton data analysis obtained by confocal microscopy. In IX. Cytoskeletální klub. Brno: Neuveden, 2003, s. 6-6.

MATULA, Petr, Magdalena SKALNÍKOVÁ, Michal KOZUBEK a Michael HAUSMANN. Improving measurement precision using automated micro-axial tomography. In Biophysics of the Genome. Brno: Masaryk University, 2003, s. 51-53. ISBN 80-210-3226-X.

SVOBODA, David a Pavel MATULA. Tissue image reconstruction: Localization of nuclei markers and segmentation based on deformable models. In Biophysics of the Genome. Brno: Masaryk University, 2003, s. 67-70. ISBN 80-210-3226-X.

MATULA, Pavel a David SVOBODA. 3D Object reconstructions in image cytometry. In Biophysics of the Genome. Brno: Masaryk University, 2003, s. 49-50. ISBN 80-210-3226-X.

DUBOVÝ, Petr, Ivana SVÍŽENSKÁ a Ilona KLUSÁKOVÁ. Computer-assisted quantitative immunohistochemistry of the extracellular matrix in the dorsal and ventral spinal roots with the use of a Lucia software. Acta histochemica. Jena: Urban&Fischer Verlag, 2002, roč. 104, č. 4, s. 371-374. ISSN 0065-1281.

MATULA, Petr, Pavel MATULA, Petr MEJZLÍK a Michal KOZUBEK. FISH 3.0 client-server system for 3D optical microscope data storage and analysis. In Biophysics of the genome and its interactions. Brno: Masaryk University, 2002, s. 77-79. ISBN 80-210-2853-X.

DUBOVÝ, Petr, Ilona KLUSÁKOVÁ a Ivana SVÍŽENSKÁ. Quantitative immunofluorescence for BDNF, NGF, and NT-3 in Schwann cells of the spinal roots and peripheral nerve. In Progress in Basic, Applied, and Diagnostic Histochemistry. Brno: Masarykova univerzita v Brně, 2002, s. 16. ISBN 80-210-2998-6.

VYSTRČILOVÁ, Michaela a Vladimír NOVOTNÝ. Využití programu pro analýzu obrazu LUCIA při stanovení věku. Ceská antropologie. Olomouc, 2002, roč. 52, s. 59-61. ISSN 0862-5085.

KOZUBEK, Michal, Stanislav KOZUBEK, Emilie LUKÁŠOVÁ, Eva BÁRTOVÁ, Magdalena SKALNÍKOVÁ, Pavel MATULA, Petr MATULA, Pavla JIRSOVÁ, Alena GAŇOVÁ a Irena KOUTNÁ. Combined confocal and wide-field high-resolution cytometry of FISH-stained cells. Cytometry. New York: International Society for Analytical Cyt, 2001, roč. 45, č. 1, s. 1-12. ISSN 0196-4763.

KOZUBEK, Michal, Stanislav KOZUBEK, Emilie LUKÁŠOVÁ, Eva BÁRTOVÁ, Magdalena SKALNÍKOVÁ, Pavel MATULA, Petr MATULA, Pavla JIRSOVÁ, Alena GAŇOVÁ a Irena KOUTNÁ. Advances in high-resolution cytometry of FISH dots in interphase cell nuclei. In Cytokinematics 2000. 2000.

KOZUBEK, Michal, Stanislav KOZUBEK, Emilie LUKÁŠOVÁ, Eva BÁRTOVÁ, Magdalena SKALNÍKOVÁ, Pavel MATULA, Petr MATULA, Pavla JIRSOVÁ, Alena GAŇOVÁ a Irena KOUTNÁ. Advances in high-resolution cytometry of FISH dots in interphase cell nuclei. In The XX Congress of the International Society for Analytical Cytology. 2000.

KOZUBEK, Michal a Petr MATULA. An efficient algorithm for measurement and correction of chromatic aberrations in fluorescence microscopy. Journal of Microscopy. Oxford: Blackwell Science, 2000, roč. 200, č. 3, s. 206-217. ISSN 0022-2720.

KOZUBEK, Stanislav, Emilie LUKÁŠOVÁ, Jana AMRICHOVÁ, Michal KOZUBEK, Andrea LIŠKOVÁ a Jana ŠLOTOVÁ. Influence of cell fixation on chromatin topography. Analytical Biochemistry. San Diego: Academic Press, 2000, roč. 282, č. 1, s. 29-38. ISSN 0003-2697.

KOTOUČKOVÁ, Ludmila, Lucie POKLUDOVÁ a Miroslav NĚMEC. Možnosti zkvalitnění výuky mikrobiologie využitím software pro analýzu obrazu. In Sborník přednášek a programů ze 7. ročníku konference Pedagogický software 2000. 1. vyd. České Budějovice: Scientific Pedagogical Publishing, 2000, s. 47. ISBN 80-85645-40-8.

SKALNÍKOVÁ, Magdalena, Stanislav KOZUBEK, Emilie LUKÁŠOVÁ, Eva BÁRTOVÁ, Pavla JIRSOVÁ, Alena CAFOURKOVÁ, Irena KOUTNÁ a Michal KOZUBEK. Spatial arrangement of genes, centromeres and chromosomes in human blood cell nuclei and its changes during the cell cycle, differentiation and after irradiation. Chromosome Research. Dordrecht: Kluwer Academic, 2000, roč. 8, č. 6, s. 487-499. ISSN 0967-3849.

KOZUBEK, Michal, Stanislav KOZUBEK, Emilie LUKÁŠOVÁ, Andrea MAREČKOVÁ, Eva BÁRTOVÁ, Magdalena SKALNÍKOVÁ a Adriana JERGOVÁ. High-resolution cytometry of FISH dots in interphase cell nuclei. Cytometry. New York: International Society for Analytical Cyt, 1999, roč. 36, č. 4, s. 279-293. ISSN 0196-4763.

KOZUBEK, Michal. High-resolution cytometry : Hardware approaches, image analysis techniques and applications. Brno: Masaryk University, 1998, 122 s.

KOZUBEK, Michal, Stanislav KOZUBEK, Emilie LUKÁŠOVÁ, Jana AMRICHOVÁ, Leonard RÝZNAR a Andrea LIŠKOVÁ. Semi-automated FISH-stained interphase nuclei analysis in human genome studies. edited by J.Slavík. In Fluorescence Microscopy and Fluorescent Probes. vol.2. New York: Plenum, 1998, s. 173-179. ISBN 0-306-46021-1.

DUBOVÝ, Petr, Radim JANČÁLEK a Pavel HANINEC. Fasciculation of the motor axons in the medial and lateral roots of the human median nerve. Scripta medica. Brno: Lékařská fakulta Masarykovy univerzity, 1997, roč. 70, 2-3, s. 123-130. ISSN 1211-3395.

KOZUBEK, Michal. Analýza obrazu pořízeného při fluorescenční in situ hybridizaci. Brno: Masarykova univerzita, 1995, 64 s.