Masaryk University

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    2010

    1. Image Division Technique in Automated Fluorescence Microscopy with Complex Content
      BRÁZDILOVÁ, Silvie Luisa and Michal KOZUBEK. Image Division Technique in Automated Fluorescence Microscopy with Complex Content. In PROCEEDINGS OF THE IADIS INTERNATIONAL CONFERENCE COMPUTER GRAPHICS, VISUALIZATION, COMPUTER VISION AND IMAGE PROCESSING 2010. 2010th ed. Freiburg, Germany: International Association for Development of the Information Society, 2010, p. 176-183. ISBN 978-972-8939-22-9.
      Name in Czech: Použití metody dělení obrazu v automatické fluorescenční mikroskopii s bohatou obsahovou funkcí
      Name (in English): Image Division Technique in Automated Fluorescence Microscopy with Complex Content
      RIV/00216224:14330/10:00067194 Proceedings paper. Informatics. English. Germany.
      Brázdilová, Silvie Luisa (203 Czech Republic, belonging to the institution) -- Kozubek, Michal (203 Czech Republic, guarantor, belonging to the institution)
      Keywords in English: Automated microscopy; fluorescence microscopy; multimodal content function; image acquisition
      Type of proceedings: post-proceedings
      International impact: yes
      Reviewed: yes
      Changed by: RNDr. Pavel Šmerk, Ph.D., učo 3880. Changed: 30/4/2014 10:38.
      More: https://is.muni.cz/publication/892557/en

    2008

    1. Acquiarium version 1.6 (software)
      MATULA, Pavel, Ondřej DANĚK, Martin MAŠKA and Marek VINKLER. Acquiarium version 1.6. 2008.
      URL
      Name in Czech: Acquiarium verze 1.6
      RIV/00216224:14330/08:00027695 Software. Use of computers, robotics and its application. English. Czech Republic.
      Matula, Pavel (203 Czech Republic, guarantor, belonging to the institution) -- Daněk, Ondřej (203 Czech Republic, belonging to the institution) -- Maška, Martin (203 Czech Republic, belonging to the institution) -- Vinkler, Marek (203 Czech Republic, belonging to the institution)
      Keywords in English: image acquisition; image correction; automated image analysis; fluorescence microscopy
      International impact: yes
      Changed by: RNDr. Marek Vinkler, Ph.D., učo 172521. Changed: 27/11/2015 08:08.
      More: https://is.muni.cz/publication/818445/en
    2. Applications of PDE-Based Image Processing in Fluorescence Microscopy
      HUBENÝ, Jan. Applications of PDE-Based Image Processing in Fluorescence Microscopy. Czech Republic: Masaryk University, Faculty of Informatics, 2008, 151 pp. PhD thesis.
      Name in Czech: Aplikace zpracování obrazu založeného na parciálních diferenciálních rovnicích ve fluorescenční mikroskopii
      Informatics. English. Czech Republic.
      Keywords in English: fluorescence microscopy; PDE-based image processing
      International impact: yes
      Changed by: prof. RNDr. Michal Kozubek, Ph.D., učo 3740. Changed: 7/1/2009 18:55.
      More: https://is.muni.cz/publication/806950/en
    3. Macarpine - new supravital, red fluorescing DNA probe.
      SLANINOVÁ, Iva, Jiří ŠINKORA, Jiří SLANINA and Eva TÁBORSKÁ. Macarpine - new supravital, red fluorescing DNA probe. In Book of Abstracts of XXIV International Congress ISAC. Budapest, Hungary: International Society for Analytical Cytology, 2008, p. 251.
      Name in Czech: Makarpin - nová supravitální, červeně fluoreskující DNA sonda.
      Name (in English): Macarpine - new supravital, red fluorescing DNA probe.
      Morphological game parks and cytology. English. Hungary.
      Keywords in English: macarpine; benzo(c)phenanthridine alkaloids; DNA probe; fluorescence microscopy; flow cytometry; cell cycle
      International impact: yes
      Changed by: prof. MUDr. Iva Slaninová, Ph.D., učo 2105. Changed: 17/2/2010 10:58.
      More: https://is.muni.cz/publication/819816/en
    4. New approaches to automated cell image acquisition and analysis using fluorescence microscopy
      VAŘECHA, Miroslav, Pavel MATULA and Michal KOZUBEK. New approaches to automated cell image acquisition and analysis using fluorescence microscopy. In XIX. Biologické Dny - International Symposium "The Functional Organization of the Cell Nucleus". 2008. ISBN 978-80-7399-545-4.
      Name in Czech: Nové přístupy k automatizovanému snímání a analýze buněk pomocí fluorescenční mikroskopie
      RIV/00216224:14330/08:00026665 Requested lectures. Use of computers, robotics and its application. English. Czech Republic.
      Vařecha, Miroslav (203 Czech Republic, guarantor) -- Matula, Pavel (203 Czech Republic) -- Kozubek, Michal (203 Czech Republic)
      Keywords in English: live-cell imaging;fluorescence microscopy;image analysis;
      Type of participation: requested lecture
      International impact: yes
      Reviewed: yes
      Changed by: Mgr. Miroslav Vařecha, Ph.D., učo 82780. Changed: 2/6/2010 11:52.
      More: https://is.muni.cz/publication/789415/en
    5. Quaternary benzo(c)phenanthridine alkaloids, new supravital DNA probes.
      SLANINOVÁ, Iva, Jiří ŠINKORA and Eva TÁBORSKÁ. Quaternary benzo(c)phenanthridine alkaloids, new supravital DNA probes. In Sborník XIX. Biologických dnů. Hradec králové: Československá biologická společnost, 2008, p. 43.
      Name in Czech: Kvartérní benzo(c)fenantridinové alkaloidy, nové supravitální DNA sondy
      Name (in English): Quaternary benzo(c)phenanthridine alkaloids, new supravital DNA probes.
      Morphological game parks and cytology. English. Czech Republic.
      Keywords in English: benzo(c)phenanthridine alkaloids; macarpine; DNA probe; fluorescence microscopy; flow cytometry; cell cycle
      Changed by: prof. MUDr. Iva Slaninová, Ph.D., učo 2105. Changed: 17/2/2010 11:01.
      More: https://is.muni.cz/publication/819818/en

    2007

    1. Acquiarium 1.0 (software)
      MATULA, Pavel, Martin MAŠKA, Ondřej DANĚK, Petr MATULA, Michal KOZUBEK and Petr KRONTORÁD. Acquiarium 1.0. 2007.
      URL
      Name in Czech: Acquiarium 1.0
      RIV/00216224:14330/07:00025677 Software. Use of computers, robotics and its application. English. Czech Republic.
      Matula, Pavel (203 Czech Republic, guarantor) -- Maška, Martin (203 Czech Republic) -- Daněk, Ondřej (203 Czech Republic) -- Matula, Petr (203 Czech Republic) -- Kozubek, Michal (203 Czech Republic) -- Krontorád, Petr (203 Czech Republic)
      Keywords in English: image acquisition; image correction; automated image analysis; fluorescence microscopy
      International impact: yes
      Changed by: doc. RNDr. Pavel Matula, Ph.D., učo 2927. Changed: 4/2/2009 14:35.
      More: https://is.muni.cz/publication/746903/en
    2. Optimizing light throughput in image cytometry
      KOZUBEK, Michal and Jakub KULAVIAK. Optimizing light throughput in image cytometry. In Analytical Cytometry IV: Book of Abstracts. 2007. ISBN 978-80-239-9591-6.
      Name in Czech: Optimalizace světelné propustnosti v obrazové cytometrii
      RIV/00216224:14330/07:00023729 Conference abstract. Use of computers, robotics and its application. English. Czech Republic.
      Kozubek, Michal (203 Czech Republic, guarantor) -- Kulaviak, Jakub (203 Czech Republic)
      Keywords in English: fluorescence microscopy; light throughput
      Type of proceedings: pre-proceedings
      Type of participation: active participation (giving a lecture, organization, etc.)
      International impact: yes
      Changed by: prof. RNDr. Michal Kozubek, Ph.D., učo 3740. Changed: 29/10/2010 14:15.
      More: https://is.muni.cz/publication/753108/en
    3. Optimizing light throughput in image cytometry
      KOZUBEK, Michal and Jakub KULAVIAK. Optimizing light throughput in image cytometry. In Analytical Cytometry IV: International Conference. 2007.
      Name in Czech: Optimalizace světelné propustnosti v obrazové cytometrii
      Use of computers, robotics and its application. English. Czech Republic.
      Keywords in English: fluorescence microscopy; light throughput
      Type of participation: requested lecture
      International impact: yes
      Changed by: prof. RNDr. Michal Kozubek, Ph.D., učo 3740. Changed: 8/1/2009 19:39.
      More: https://is.muni.cz/publication/753121/en
    4. Precise simulation of 3D fluorescence microscope image formation
      KOZUBEK, Michal. Precise simulation of 3D fluorescence microscope image formation. In Pattern Recognition and Computer Vision Colloquium. 2007.
      Name in Czech: Precizní simulace 3D tvorby obrazu ve fluorescenčním mikroskopu
      Use of computers, robotics and its application. English. Czech Republic.
      Keywords in English: fluorescence microscopy; image formation
      Type of participation: requested lecture
      International impact: yes
      Changed by: prof. RNDr. Michal Kozubek, Ph.D., učo 3740. Changed: 8/1/2009 19:40.
      More: https://is.muni.cz/publication/753143/en
    5. Quaternary Benzo[c]phenanthridine Alkaloids - Novel Cell Permeant and Red Fluorescing DNA Probes
      SLANINOVÁ, Iva, Jiří SLANINA and Eva TÁBORSKÁ. Quaternary Benzo[c]phenanthridine Alkaloids - Novel Cell Permeant and Red Fluorescing DNA Probes. Cytometry Part A. UNITED STATES: John Wiley & Sons, Inc., 2007, 71A, No 9, p. 700-708. ISSN 1552-4922.
      URL
      Name in Czech: Kvartérní benzo[c]fenanthridinové alkaloidy - nové supravitální červeně fluoreskující DNA sondy
      RIV/00216224:14110/07:00020661 Article in a journal. Morphological game parks and cytology. English. United States of America.
      Slaninová, Iva (203 Czech Republic, guarantor) -- Slanina, Jiří (203 Czech Republic) -- Táborská, Eva (203 Czech Republic)
      Keywords in English: benzophenanthridine alkaloids; cell-permeant DNA dye; chelirubine; flow cytometry; fluorescence microscopy; DNA content; cell cycle; macarpine; multicolor analysis; sanguinarine
      International impact: yes
      Reviewed: yes
      Changed by: prof. MUDr. Iva Slaninová, Ph.D., učo 2105. Changed: 22/6/2009 12:04.
      More: https://is.muni.cz/publication/745022/en
    6. Towards Reliable Autofocusing in Automated Microscopy
      BRÁZDILOVÁ, Silvie Luisa. Towards Reliable Autofocusing in Automated Microscopy. In Proceedings of the 4th International Conference on Informatics in Control, Automation and Robotics. Portugal: Insticc Press, 2007, p. 440-448, 8 pp. ISBN 978-972-8865-82-5.
      Name in Czech: Spolehlivé zaostřování v automatizované mikroskopii
      RIV/00216224:14330/07:00022191 Proceedings paper. Informatics. English. France.
      Brázdilová, Silvie Luisa (203 Czech Republic, guarantor)
      Keywords in English: Fluorescence microscopy; focus function; genetic programming
      Type of proceedings: post-proceedings
      International impact: yes
      Reviewed: yes
      Changed by: RNDr. Mgr. Silvie Luisa Brázdilová, Ph.D., učo 4123. Changed: 30/10/2008 23:34.
      More: https://is.muni.cz/publication/719260/en

    2006

    1. Benzophenanthridine alkaloids as a new supravital DNA dyes.
      SLANINOVÁ, Iva, Jiří ŠINKORA and Eva TÁBORSKÁ. Benzophenanthridine alkaloids as a new supravital DNA dyes. In Sborník XIV. Cytoskeletálního klubu. Praha: Československá biologická společnost, 2006, p. 20-20.
      Name in Czech: Benzofenantridinové alkaloidy - nové supravitální DNA barviva.
      Genetics and molecular biology. English. Czech Republic.
      Keywords in English: benzophenanthridine alkaloids; DNA dye; flow cytometry; fluorescence microscopy; multicolor analysis; cell cycle
      International impact: yes
      Changed by: prof. MUDr. Iva Slaninová, Ph.D., učo 2105. Changed: 12/12/2006 11:40.
      More: https://is.muni.cz/publication/705062/en
    2. Optimizing light throughput in fluorescence microscopy
      KOZUBEK, Michal and Jakub KULAVIAK. Optimizing light throughput in fluorescence microscopy. In 6th International ELMI Meeting and Workshop on Advanced Light Microscopy: Abstract Book. 2006.
      Name in Czech: Optimalizace světelné propustnosti ve fluorescenční mikroskopii
      RIV/00216224:14330/06:00041813 Conference abstract. Use of computers, robotics and its application. English. Portugal.
      Kozubek, Michal (203 Czech Republic, guarantor) -- Kulaviak, Jakub (203 Czech Republic)
      Keywords in English: fluorescence microscopy; image formation
      Type of proceedings: pre-proceedings
      International impact: yes
      Reviewed: yes
      Changed by: prof. RNDr. Michal Kozubek, Ph.D., učo 3740. Changed: 7/5/2010 09:09.
      More: https://is.muni.cz/publication/753311/en
    3. Použití makarpinu ke klasifikaci buněk průtokovou cytometrií. (Use of macarpine in flow cytometry cell clasification)
      SLANINOVÁ, Iva, Jiří ŠINKORA, Eva TÁBORSKÁ, Jiří SLANINA and Jiří SLAVÍK. Použití makarpinu ke klasifikaci buněk průtokovou cytometrií. (Use of macarpine in flow cytometry cell clasification). 2006.
      Name (in English): Use of macarpine in flow cytometry cell clasification
      RIV/00216224:14110/06:00024562 Patent. Genetics and molecular biology. Czech. Czech Republic.
      Slaninová, Iva (203 Czech Republic, guarantor) -- Šinkora, Jiří (203 Czech Republic) -- Táborská, Eva (203 Czech Republic) -- Slanina, Jiří (203 Czech Republic) -- Slavík, Jiří (203 Czech Republic)
      Keywords in English: macarpine; DNA stain; cell permeant DNA stain; fluorescence microscopy; flow cytometry; DNA content; cell cycle; multiparameter analysis
      International impact: yes
      Changed by: prof. MUDr. Iva Slaninová, Ph.D., učo 2105. Changed: 12/12/2006 10:08.
      More: https://is.muni.cz/publication/705050/en

    2005

    1. Image acquisition and its automation in fluorescence microscopy
      KOZUBEK, Michal. Image acquisition and its automation in fluorescence microscopy. In From cells to proteins: Imaging nature across dimensions. Dordrecht: Springer, 2005, p. 227-270. NATO Science Series. ISBN 1-4020-3615-9.
      Name in Czech: Snímání obrazu a jeho automatizace ve fluorescenční mikroskopii
      RIV/00216224:14330/05:00013579 Chapter(s) of a specialized book. Use of computers, robotics and its application. English. Netherlands.
      Kozubek, Michal (203 Czech Republic, guarantor)
      Keywords in English: image acquisition; fluorescence microscopy; automated microscopy; image cytometry; FISH
      International impact: yes
      Reviewed: yes
      Changed by: prof. RNDr. Michal Kozubek, Ph.D., učo 3740. Changed: 7/5/2010 15:10.
      More: https://is.muni.cz/publication/564474/en

    2004

    1. Applications of Image Registration in Human Genome Research
      MATULA, Petr, Michal KOZUBEK and Pavel MATULA. Applications of Image Registration in Human Genome Research. In Computer Vision and Mathematical Methods in Medical and Biomedical Image Analysis. Berlin: Springer-Verlag, 2004, p. 376-384. ISBN 3-540-22675-3.
      Name in Czech: Aplikace registrace obrazů při výzkumu lidského genomu
      RIV/00216224:14330/04:00009662 Proceedings paper. Informatics. English. Germany.
      Matula, Petr (203 Czech Republic, guarantor) -- Kozubek, Michal (203 Czech Republic) -- Matula, Pavel (203 Czech Republic)
      Keywords in English: image registration; fluorescence microscopy; human genome research
      International impact: yes
      Reviewed: yes
      Changed by: prof. RNDr. Michal Kozubek, Ph.D., učo 3740. Changed: 7/5/2010 15:35.
      More: https://is.muni.cz/publication/558510/en

    2001

    1. Combined confocal and wide-field high-resolution cytometry of FISH-stained cells
      KOZUBEK, Michal, Stanislav KOZUBEK, Emilie LUKÁŠOVÁ, Eva BÁRTOVÁ, Magdalena SKALNÍKOVÁ, Pavel MATULA, Petr MATULA, Pavla JIRSOVÁ, Alena GAŇOVÁ and Irena KOUTNÁ. Combined confocal and wide-field high-resolution cytometry of FISH-stained cells. Cytometry. New York: International Society for Analytical Cyt, 2001, vol. 45, No 1, p. 1-12. ISSN 0196-4763.
      URL
      RIV/00216224:14330/01:00004339 Article in a journal. Use of computers, robotics and its application. English. United States of America.
      Kozubek, Michal (203 Czech Republic, guarantor, belonging to the institution) -- Kozubek, Stanislav (203 Czech Republic) -- Lukášová, Emilie (203 Czech Republic) -- Bártová, Eva (203 Czech Republic) -- Skalníková, Magdalena (203 Czech Republic, belonging to the institution) -- Matula, Pavel (203 Czech Republic, belonging to the institution) -- Matula, Petr (203 Czech Republic, belonging to the institution) -- Jirsová, Pavla (203 Czech Republic, belonging to the institution) -- Gaňová, Alena (203 Czech Republic, belonging to the institution) -- Koutná, Irena (203 Czech Republic, belonging to the institution)
      Keywords in English: high-resolution cytometry; fluorescence in situ hybridization; interphase nuclei; fluorescence microscopy; automated microscopy; image analysis; 3-D analysis
      International impact: yes
      Reviewed: yes
      Changed by: prof. RNDr. Michal Kozubek, Ph.D., učo 3740. Changed: 29/1/2021 18:38.
      More: https://is.muni.cz/publication/366392/en

    2000

    1. An efficient algorithm for measurement and correction of chromatic aberrations in fluorescence microscopy
      KOZUBEK, Michal and Petr MATULA. An efficient algorithm for measurement and correction of chromatic aberrations in fluorescence microscopy. Journal of Microscopy. Oxford: Blackwell Science, 2000, vol. 200, No 3, p. 206-217. ISSN 0022-2720.
      URL
      RIV/00216224:14330/00:00002780 Article in a journal. Use of computers, robotics and its application. English. United Kingdom of Great Britain and Northern Ireland.
      Kozubek, Michal (203 Czech Republic, guarantor, belonging to the institution) -- Matula, Petr (203 Czech Republic, belonging to the institution)
      Keywords in English: chromatic aberration; fluorescence microscopy; fluorescent bead; image analysis
      International impact: yes
      Reviewed: yes
      Changed by: prof. RNDr. Michal Kozubek, Ph.D., učo 3740. Changed: 29/1/2021 18:40.
      More: https://is.muni.cz/publication/346313/en

    1999

    1. High-resolution cytometry of FISH dots in interphase cell nuclei
      KOZUBEK, Michal, Stanislav KOZUBEK, Emilie LUKÁŠOVÁ, Andrea MAREČKOVÁ, Eva BÁRTOVÁ, Magdalena SKALNÍKOVÁ and Adriana JERGOVÁ. High-resolution cytometry of FISH dots in interphase cell nuclei. Cytometry. New York: International Society for Analytical Cyt, 1999, vol. 36, No 4, p. 279-293. ISSN 0196-4763.
      RIV/00216224:14330/99:00001446 Article in a journal. Use of computers, robotics and its application. English. United States of America.
      Kozubek, Michal (203 Czech Republic) -- Kozubek, Stanislav (203 Czech Republic) -- Lukášová, Emilie (203 Czech Republic) -- Bártová, Eva (203 Czech Republic) -- Skalníková, Magdalena (203 Czech Republic) -- Jergová, Adriana (203 Czech Republic)
      Keywords in English: fluorescence in situ hybridization; interphase nuclei; fluorescence microscopy; automated microscopy; image analysis; 3-D analysis; high-resolution cytometry
      International impact: yes
      Reviewed: yes
      Changed by: prof. RNDr. Michal Kozubek, Ph.D., učo 3740. Changed: 7/5/2010 17:12.
      More: https://is.muni.cz/publication/223212/en
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