Výpis publikací

MICHÁLEK, Jan a Michal MIKL. Smooth dynamic T2* mapping in fMRI based on a novel, total variation-minimizing algorithm for efficient multi-echo BOLD time series denoising with high signal-to-noise and contrast-to-noise ratios. FRONTIERS IN NEUROSCIENCE. LAUSANNE: FRONTIERS MEDIA SA, 2025, roč. 19, Oct, s. 1-21. ISSN 1662-453X. Dostupné z: https://doi.org/10.3389/fnins.2025.1544748.

ZENK, Maximilian; Ujjwal BAID; Sarthak PATI; Akis LINARDOS; Brandon EDWARDS; Micah SHELLER; Patrick FOLEY; Alejandro ARISTIZABAL; David ZIMMERER; Alexey GRUZDEV; Jason MARTIN; Russell T SHINOHARA; Annika REINKE; Fabian ISENSEE; Santhosh PARAMPOTTUPADAM; Kaushal PAREKH; Ralf FLOCA; Hasan KASSEM; Bhakti BAHETI; Siddhesh THAKUR; Verena CHUNG; Kaisar KUSHIBAR; Karim LEKADIR; Meirui JIANG; Youtan YIN; Hongzheng YANG; Quande LIU; Cheng CHEN; Qi DOU; Pheng-Ann HENG; Xiaofan ZHANG; Shaoting ZHANG; Muhammad Irfan KHAN; Mohammad Ayyaz AZEEM; Mojtaba JAFARITADI; Esa ALHONIEMI; Elina KONTIO; Suleiman A KHAN; Leon MAECHLER; Ivan EZHOV; Florian KOFLER; Suprosanna SHIT; Johannes C PAETZOLD; Timo LOEHR; Benedikt WIESTLER; Himashi PEIRIS; Kamlesh PAWAR; Shenjun ZHONG; Zhaolin CHEN; Munawar HAYAT; Gary EGAN; Mehrtash HARANDI; Isik Polat ECE; Gorkem POLAT; Altan KOCYIGIT; Alptekin TEMIZEL; Anup TULADHAR; Lakshay TYAGI; Raissa SOUZA; Nils D FORKERT; Pauline MOUCHES; Matthias WILMS; Vishruth SHAMBHAT; Akansh MAURYA; Shubham Subhas DANANNAVAR; Rohit KALLA; Vikas Kumar ANAND; Ganapathy KRISHNAMURTHI; Sahil NALAWADE; Chandan GANESH; Ben WAGNER; Divya REDDY; Yudhajit DAS; Fang F YU; Baowei FEI; Ananth J MADHURANTHAKAM; Joseph MALDJIAN; Gaurav SINGH; Jianxun REN; Wei ZHANG; Ning AN; Qingyu HU; Youjia ZHANG; Ying ZHOU; Vasilis SIOMOS; Giacomo TARRONI; Jonathan PASSERRAT-PALMBACH; Ambrish RAWAT; Giulio ZIZZO; Swanand Ravindra KADHE; Jonathan P EPPERLEIN; Stefano BRAGHIN; Yuan WANG; Renuga KANAGAVELU; Qingsong WEI; Yechao YANG; Yong LIU; Krzysztof KOTOWSKI; Szymon ADAMSKI; Bartosz MACHURA; Wojciech MALARA; Lukasz ZARUDZKI; Jakub NALEPA; Yaying SHI; Hongjian GAO; Salman AVESTIMEHR; Yonghong YAN; Agus S AKBAR; Ekaterina KONDRATEVA; Hua YANG; Zhaopei LI; Hung-Yu WU; Johannes ROTH; Camillo SAUERESSIG; Alexandre MILESI; Quoc D NGUYEN; Nathan J GRUENHAGEN; Tsung-Ming HUANG; Jun MA; Har Shwinder H SINGH; Nai-Yu PAN; Dingwen ZHANG; Ramy A ZEINELDIN; Michal FUTREGA; Yading YUAN; Gian Marco CONTE; Xue FENG; Quan D PHAM; Yong XIA; Zhifan JIANG; Huan Minh LUU; Mariia DOBKO; Alexandre CARRE; Bair TUCHINOV; Hassan MOHY-UD-DIN; Saruar ALAM; Anup SINGH; Nameeta SHAH; Weichung WANG; Chiharu SAKO; Michel BILELLO; Satyam GHODASARA; Suyash MOHAN; Christos DAVATZIKOS; Evan CALABRESE; Jeffrey RUDIE; Javier VILLANUEVA-MEYER; Soonmee CHA; Christopher HESS; John MONGAN; Madhura INGALHALIKAR; Manali JADHAV; Umang PANDEY; Jitender SAINI; Raymond Y HUANG; Ken CHANG; Minh-Son TO; Sargam BHARDWAJ; Chee CHONG; Marc AGZARIAN; Michal KOZUBEK; Filip LUX; Jan MICHÁLEK; Petr MATULA; Miloš KEŘKOVSKÝ; Tereza KOPŘIVOVÁ; Marek DOSTÁL; Václav VYBÍHAL; Marco C PINHO; James HOLCOMB; Marie METZ; Rajan JAIN; Matthew D LEE; Yvonne W LUI; Pallavi TIWARI; Ruchika VERMA; Rohan BAREJA; Ipsa YADAV; Jonathan CHEN; Neeraj KUMAR; Yuriy GUSEV; Krithika BHUVANESHWAR; Anousheh SAYAH; Camelia BENCHEQROUN; Anas BELOUALI; Subha MADHAVAN; Rivka R COLEN; Aikaterini KOTROTSOU; Philipp VOLLMUTH; Gianluca BRUGNARA; Chandrakanth J PREETHA; Felix SAHM; Martin BENDSZUS; Wolfgang WICK; Abhishek MAHAJAN; Carmen BALANA; Jaume CAPELLADES; Josep PUIG; Yoon Seong CHOI; Seung-Koo LEE; Jong Hee CHANG; Sung Soo AHN; Hassan F SHAYKH; Alejandro HERRERA-TRUJILLO; Maria TRUJILLO; William ESCOBAR; Ana ABELLO; Jose BERNAL; Jhon GOMEZ; Pamela LAMONTAGNE; Daniel S MARCUS; Mikhail MILCHENKO; Arash NAZERI; Bennett LANDMAN; Karthik RAMADASS; Kaiwen XU; Silky CHOTAI; Lola B CHAMBLESS; Akshitkumar MISTRY; Reid C THOMPSON; Ashok SRINIVASAN; J Rajiv BAPURAJ; Arvind RAO; Nicholas WANG; Ota YOSHIAKI; Toshio MORITANI; Sevcan TURK; Joonsang LEE; Snehal PRABHUDESAI; John GARRETT; Matthew LARSON; Robert JERAJ; Hongwei LI; Tobias WEISS; Michael WELLER; Andrea BINK; Bertrand POUYMAYOU; Sonam SHARMA; Tzu-Chi TSENG; Saba ADABI; Xavier Falcao ALEXANDRE; Samuel B MARTINS; Bernardo C A TEIXEIRA; Flavia SPRENGER; David MENOTTI; Diego R LUCIO; Simone P NICLOU; Olivier KEUNEN; Ann-Christin HAU; Enrique PELAEZ; Heydy FRANCO-MALDONADO; Francis LOAYZA; Sebastian QUEVEDO; Richard MCKINLEY; Johannes SLOTBOOM; Piotr RADOJEWSKI; Raphael MEIER; Roland WIEST; Johannes TRENKLER; Josef PICHLER; Georg NECKER; Andreas HAUNSCHMIDT; Stephan MECKEL; Pamela GUEVARA; Esteban TORCHE; Cristobal MENDOZA; Vera FRANCO; Elvis RIOS; Eduardo LOPEZ; Sergio A VELASTIN; Joseph CHOI; Stephen BAEK; Yusung KIM; Heba ISMAEL; Bryan ALLEN; John M BUATTI; Peter ZAMPAKIS; Vasileios PANAGIOTOPOULOS; Panagiotis TSIGANOS; Sotiris ALEXIOU; Ilias HALIASSOS; Evangelia I ZACHARAKI; Konstantinos MOUSTAKAS; Christina KALOGEROPOULOU; Dimitrios M KARDAMAKIS; Bing LUO; Laila M POISSON; Ning WEN; Martin VALLIERES; Mahdi Ait Lhaj LOUTFI; David FORTIN; Martin LEPAGE; Fanny MORON; Jacob MANDEL; Gaurav SHUKLA; Spencer LIEM; Gregory S ALEXANDRE; Joseph LOMBARDO; Joshua D PALMER; Adam E FLANDERS; Adam P DICKER; Godwin OGBOLE; Dotun OYEKUNLE; Olubunmi ODAFE-OYIBOTHA; Babatunde OSOBU; Hikima Mustapha SHU'AIBU; Mayowa SONEYE; Farouk DAKO; Adeleye DORCAS; Derrick MURCIA; Eric FU; Rourke HAAS; John A THOMPSON; David Ryan ORMOND; Stuart CURRIE; Kavi FATANIA; Russell FROOD; Amber L SIMPSON; Jacob J PEOPLES; Ricky HU; Danielle CUTLER; Fabio Y MORAES; Anh TRAN; Mohammad HAMGHALAM; Michael A BOSS; James GIMPEL; Kattil Veettil DEEPAK; Kendall SCHMIDT; Lisa CIMINO; Cynthia PRICE; Brian BIALECKI; Sailaja MARELLA; Charles APGAR; Andras JAKAB; Marc-Andre WEBER; Errol COLAK; Jens KLEESIEK; John B FREYMANN; Justin S KIRBY; Lena MAIER-HEIN; Jake ALBRECHT; Peter MATTSON; Alexandros KARARGYRIS; Prashant SHAH; Bjoern MENZE; Klaus MAIER-HEIN a Spyridon BAKAS. Towards fair decentralized benchmarking of healthcare AI algorithms with the Federated Tumor Segmentation (FeTS) challenge. Nature communications. BERLIN: NATURE PORTFOLIO, 2025, roč. 16, č. 1, s. 1-20. ISSN 2041-1723. Dostupné z: https://doi.org/10.1038/s41467-025-60466-1.

PATI, Sarthak; Ujjwal BAID; Brandon EDWARDS; Micah SHELLER; Shih-Han WANG; G Anthony REINA; Patrick FOLEY; Alexey GRUZDEV; Deepthi KARKADA; Christos DAVATZIKOS; Chiharu SAKO; Satyam GHODASARA; Michel BILELLO; Suyash MOHAN; Philipp VOLLMUTH; Gianluca BRUGNARA; Chandrakanth J PREETHA; Felix SAHM; Klaus MAIER-HEIN; Maximilian ZENK; Martin BENDSZUS; Wolfgang WICK; Evan CALABRESE; Jeffrey RUDIE; Javier VILLANUEVA-MEYER; Soonmee CHA; Madhura INGALHALIKAR; Manali JADHAV; Umang PANDEY; Jitender SAINI; John GARRETT; Matthew LARSON; Robert JERAJ; Stuart CURRIE; Russell FROOD; Kavi FATANIA; Raymond Y HUANG; Ken CHANG; Carmen Balaña QUINTERO; Jaume CAPELLADES; Josep PUIG; Johannes TRENKLER; Josef PICHLER; Georg NECKER; Andreas HAUNSCHMIDT; Stephan MECKEL; Gaurav SHUKLA; Spencer LIEM; Gregory S ALEXANDER; Joseph LOMBARDO; Joshua D PALMER; Adam E FLANDERS; Adam P DICKER; Haris I SAIR; Craig K JONES; Archana VENKATARAMAN; Meirui JIANG; Tiffany Y SO; Cheng CHEN; Pheng Ann HENG; Qi DOU; Michal KOZUBEK; Filip LUX; Jan MICHÁLEK; Petr MATULA; Miloš KEŘKOVSKÝ; Tereza KOPŘIVOVÁ; Marek DOSTÁL; Václav VYBÍHAL; Michael A VOGELBAUM; J Ross MITCHELL; Joaquim FARINHAS; Joseph A MALDJIAN; Chandan Ganesh Bangalore YOGANANDA; Marco C PINHO; Divya REDDY; James HOLCOMB; Benjamin C WAGNER; Benjamin M ELLINGSON; Timothy F CLOUGHESY; Catalina RAYMOND; Talia OUGHOURLIAN; Akifumi HAGIWARA; Chencai WANG; Minh-Son TO; Sargam BHARDWAJ; Chee CHONG; Marc AGZARIAN; Alexandre Xavier FALCÃO; Samuel B MARTINS; Bernardo C A TEIXEIRA; Flávia SPRENGER; David MENOTTI; Diego R LUCIO; Pamela LAMONTAGNE; Daniel MARCUS; Benedikt WIESTLER; Florian KOFLER; Ivan EZHOV; Marie METZ; Rajan JAIN; Matthew LEE; Yvonne W LUI; Richard MCKINLEY; Johannes SLOTBOOM; Piotr RADOJEWSKI; Raphael MEIER; Roland WIEST; Derrick MURCIA; Eric FU; Rourke HAAS; John THOMPSON; David Ryan ORMOND; Chaitra BADVE; Andrew E SLOAN; Vachan VADMAL; Kristin WAITE; Rivka R COLEN; Linmin PEI; Murat AK; Ashok SRINIVASAN; J Rajiv BAPURAJ; Arvind RAO; Nicholas WANG; Ota YOSHIAKI; Toshio MORITANI; Sevcan TURK; Joonsang LEE; Snehal PRABHUDESAI; Fanny MORÓN; Jacob MANDEL; Konstantinos KAMNITSAS; Ben GLOCKER; Luke V M DIXON; Matthew WILLIAMS; Peter ZAMPAKIS; Vasileios PANAGIOTOPOULOS; Panagiotis TSIGANOS; Sotiris ALEXIOU; Ilias HALIASSOS; Evangelia I ZACHARAKI; Konstantinos MOUSTAKAS; Christina KALOGEROPOULOU; Dimitrios M KARDAMAKIS; Yoon Seong CHOI; Seung-Koo LEE; Jong Hee CHANG; Sung Soo AHN; Bing LUO; Laila POISSON; Ning WEN; Pallavi TIWARI; Ruchika VERMA; Rohan BAREJA; Ipsa YADAV; Jonathan CHEN; Neeraj KUMAR; Marion SMITS; Sebastian R VAN DER VOORT; Ahmed ALAFANDI; Fatih INCEKARA; Maarten M J WIJNENGA; Georgios KAPSAS; Renske GAHRMANN; Joost W SCHOUTEN; Hendrikus J DUBBINK; Arnaud J P E VINCENT; Martin J VAN DEN BENT; Pim J FRENCH; Stefan KLEIN; Yading YUAN; Sonam SHARMA; Tzu-Chi TSENG; Saba ADABI; Simone P NICLOU; Olivier KEUNEN; Ann-Christin HAU; Martin VALLIÈRES; David FORTIN; Martin LEPAGE; Bennett LANDMAN; Karthik RAMADASS; Kaiwen XU; Silky CHOTAI; Lola B CHAMBLESS; Akshitkumar MISTRY; Reid C THOMPSON; Yuriy GUSEV; Krithika BHUVANESHWAR; Anousheh SAYAH; Camelia BENCHEQROUN; Anas BELOUALI; Subha MADHAVAN; Thomas C BOOTH; Alysha CHELLIAH; Marc MODAT; Haris SHUAIB; Carmen DRAGOS; Aly ABAYAZEED; Kenneth KOLODZIEJ; Michael HILL; Ahmed ABBASSY; Shady GAMAL; Mahmoud MEKHAIMAR; Mohamed QAYATI; Mauricio REYES; Ji Eun PARK; Jihye YUN; Ho Sung KIM; Abhishek MAHAJAN; Mark MUZI; Sean BENSON; Regina G H BEETS-TAN; Jonas TEUWEN; Alejandro HERRERA-TRUJILLO; Maria TRUJILLO; William ESCOBAR; Ana ABELLO; Jose BERNAL; Jhon GÓMEZ; Joseph CHOI; Stephen BAEK; Yusung KIM; Heba ISMAEL; Bryan ALLEN; John M BUATTI; Aikaterini KOTROTSOU; Hongwei LI; Tobias WEISS; Michael WELLER; Andrea BINK; Bertrand POUYMAYOU; Hassan F SHAYKH; Joel SALTZ; Prateek PRASANNA; Sampurna SHRESTHA; Kartik M MANI; David PAYNE; Tahsin KURC; Enrique PELAEZ; Heydy FRANCO-MALDONADO; Francis LOAYZA; Sebastian QUEVEDO; Pamela GUEVARA; Esteban TORCHE; Cristobal MENDOZA; Vera FRANCO; Elvis RÍOS; Eduardo LÓPEZ; Sergio A VELASTIN; Godwin OGBOLE; Mayowa SONEYE; Dotun OYEKUNLE; Olubunmi ODAFE-OYIBOTHA; Babatunde OSOBU; Mustapha SHU'AIBU; Adeleye DORCAS; Farouk DAKO; Amber L SIMPSON; Mohammad HAMGHALAM; Jacob J PEOPLES; Ricky HU; Anh TRAN; Danielle CUTLER; Fabio Y MORAES; Michael A BOSS; James GIMPEL; Deepak Kattil VEETTIL; Kendall SCHMIDT; Brian BIALECKI; Sailaja MARELLA; Cynthia PRICE; Lisa CIMINO; Charles APGAR; Prashant SHAH; Bjoern MENZE; Jill S BARNHOLTZ-SLOAN; Jason MARTIN a Spyridon BAKAS. Federated learning enables big data for rare cancer boundary detection. Nature Communications. London: Nature Publishing Group, 2022, roč. 13, č. 7346, s. 1-17. ISSN 2041-1723. Dostupné z: https://doi.org/10.1038/s41467-022-33407-5.

PREISLER, Jan; Markéta MACHÁLKOVÁ; Barbora ADAMOVÁ; Jarmila NAVRÁTILOVÁ; Marek STIBOREK; Stanislava MELIORISOVÁ; Jiří KROUPA; Pavel HOUŠKA; Jan MICHÁLEK; Karel ŠTĚPKA; Katarzyna Anna RADASZKIEWICZ; Adam PRUŠKA; Viktor KANICKÝ; Michal KOZUBEK a Jan ŠMARDA. Multimodal Imaging of 3D Cell Aggregates. In MSB 2021. 2021.

PAVLATOVSKÁ, Barbora; Markéta MACHÁLKOVÁ; Petra BRISUDOVÁ; Adam PRUŠKA; Karel ŠTĚPKA; Jan MICHÁLEK; Tereza NEČASOVÁ; Petr BENEŠ; Jan ŠMARDA; Jan PREISLER; Michal KOZUBEK a Jarmila NAVRÁTILOVÁ. Lactic Acidosis Interferes With Toxicity of Perifosine to Colorectal Cancer Spheroids: Multimodal Imaging Analysis. Frontiers in Oncology. Lausanne: Frontiers Media S.A., 2020, roč. 10, December, s. 1-18. ISSN 2234-943X. Dostupné z: https://doi.org/10.3389/fonc.2020.581365.

PAVLATOVSKÁ, Barbora; Jarmila NAVRÁTILOVÁ; Markéta MACHÁLKOVÁ; Jan MICHÁLEK; Karel ŠTĚPKA; Adam PRUŠKA; Michal KOZUBEK; Petr BENEŠ; Jan ŠMARDA a Jan PREISLER. Combined therapy of perifosine and ABT-737 results in higher cytotoxic effect but also induces expression of EMT markers in colon cancer cell lines. In Spetses Summer School: Molecular Mechanisms in Signal Transduction and Cancer, Greece. 2019.

MACHÁLKOVÁ, Markéta; Barbora PAVLATOVSKÁ; Jan MICHÁLEK; Adam PRUŠKA; Karel ŠTĚPKA; Tereza NEČASOVÁ; Katarzyna Anna RADASZKIEWICZ; Michal KOZUBEK; Jan ŠMARDA; Jan PREISLER a Jarmila NAVRÁTILOVÁ. Drug Penetration Analysis in 3D Cell Cultures Using Fiducial-Based Semiautomatic Coregistration of MALDI MSI and Immunofluorescence Images. Analytical Chemistry. American Chemical Society, 2019, roč. 91, č. 21, s. 13475-13484. ISSN 0003-2700. Dostupné z: https://doi.org/10.1021/acs.analchem.9b02462.

MICHÁLEK, Jan; Pavla HANZLÍKOVÁ; Tuan TRINH a Dalibor PACÍK. Fast and accurate compensation of signal offset for T2 mapping. Magnetic Resonance Materials in Physics, Biology and Medicine. Springer International Publishing, 2019, roč. 32, č. 4, s. 423-436. ISSN 0968-5243. Dostupné z: https://doi.org/10.1007/s10334-019-00737-3.

NAVRÁTILOVÁ, Jarmila; Markéta MACHÁLKOVÁ; Barbora PAVLATOVSKÁ; Jan MICHÁLEK; Adam PRUŠKA; Karel ŠTĚPKA; Katarzyna Anna RADASZKIEWICZ; Jan PREISLER; Jan ŠMARDA a Michal KOZUBEK. Fiducial-based semi-automatic coregistration and analysis of multimodal MALDI MS and immunofluorescent data. In Imaging Principles of Life 2019. 2019.

MICHÁLEK, Jan; Karel ŠTĚPKA; Michal KOZUBEK; Jarmila NAVRÁTILOVÁ; Barbora PAVLATOVSKÁ; Markéta MACHÁLKOVÁ; Jan PREISLER a Adam PRUŠKA. Quantitative Assessment of Anti-Cancer Drug Efficacy From Coregistered Mass Spectrometry and Fluorescence Microscopy Images of Multicellular Tumor Spheroids. Microscopy and Microanalysis. Cambridge University Press, 2019, roč. 25, č. 6, s. 1311-1322. ISSN 1431-9276. Dostupné z: https://doi.org/10.1017/S1431927619014983.

PAVLATOVSKÁ, Barbora; Jarmila NAVRÁTILOVÁ; Markéta MACHÁLKOVÁ; Petra BRISUDOVÁ; Jan MICHÁLEK; Karel ŠTĚPKA; Adam PRUŠKA; Michal KOZUBEK; Petr BENEŠ; Jan ŠMARDA a Jan PREISLER. Tumor-specific microenvironment contributes to the perifosine resistance in 3D colorectal cancer (CRC) models. In Goodbye Flat Biology: Advancing 3D-based Models for Cancer Biology and Drug Discovery, Berlin, Germany. 2019.

PAVLATOVSKÁ, Barbora; Jarmila NAVRÁTILOVÁ; Markéta MACHÁLKOVÁ; Adam PRUŠKA; Jan MICHÁLEK; Karel ŠTĚPKA; Michal KOZUBEK; Jan ŠMARDA a Jan PREISLER. The effect and distribution of the drug perifosine in 2D and 3D colorectal cell cultures. In Summer School in Translational Cancer Research 2018. 2018.

PAVLATOVSKÁ, Barbora; Jarmila NAVRÁTILOVÁ; Markéta MACHÁLKOVÁ; Adam PRUŠKA; Jan MICHÁLEK; Karel ŠTĚPKA; Michal KOZUBEK; Jan ŠMARDA a Jan PREISLER. The effect and distribution of the drug perifosine in 2D and 3D colorectal cell cultures. In XIX. Meeting of Biochemists and Molecular Biologists. 2018.

MASKOVA, P.; B. RADOCHOVA; Z. LHOTAKOVA; Jan MICHÁLEK a H. LIPAVSKA. Nonstructural carbohydrate-balance response to long-term elevated CO2 exposure in European beech and Norway spruce mixed cultures: biochemical and ultrastructural responses. Canadian journal of forest research. Ottawa: The national research council, 2017, roč. 47, č. 11, s. 1488-1494. ISSN 0045-5067. Dostupné z: https://doi.org/10.1139/cjfr-2017-0083.