Publication Records

LUO, Yu, Martina LENARČIČ ŽIVKOVIC, Jiawei WANG, Jan RYNEŠ, Silvie TRANTÍRKOVÁ, Lukáš TRANTÍREK, Daniela VERGA and Jean-Louis MERGNY. A sodium/potassium switch for G4-prone G/C-rich sequences. Nucleic acids research. Oxford: Oxford University Press, 2024, vol. 52, No 1, p. 448-461. ISSN 0305-1048. Available from: https://dx.doi.org/10.1093/nar/gkad1073.

DZUROV, Matej, Šárka POSPÍŠILOVÁ, Michaela KRAFČÍKOVÁ, Lukáš TRANTÍREK, Lucy VOJTOVÁ and Jan RYNEŠ. A thermosensitive gel matrix for bioreactor-assisted in-cell NMR of nucleic acids and proteins. Journal of biomolecular NMR. Dordrecht: Springer, 2023, vol. 77, 5-6, p. 203-215. ISSN 0925-2738. Available from: https://dx.doi.org/10.1007/s10858-023-00422-7.

ŠKOLÁKOVÁ, Petra, Martin GAJARSKÝ, Jan PALACKÝ, Denis ŠUBERT, Daniel RENČIUK, Lukáš TRANTÍREK, Jean-Louis MERGNY and Michaela VORLICKOVA. DNA i-motif formation at neutral pH is driven by kinetic partitioning. Nucleic Acids Research. Oxford University Press, 2023, vol. 51, No 6, p. 2950-2962. ISSN 0305-1048. Available from: https://dx.doi.org/10.1093/nar/gkad119.

CÍGLER, Petr, Lukáš BÁLEK, Jan HAVLÍK, Pavel KREJČÍ, Lukáš TRANTÍREK and Silvie TRANTÍRKOVÁ. Nanodiamonds as artificial proteins for regulation of a cell signalling system. 2023.

CÍGLER, Petr, Lukáš BÁLEK, Jan HAVLÍK, Pavel KREJČÍ, Lukáš TRANTÍREK and Silvie TRANTÍRKOVÁ. Nanodiamonds as artificial proteins for regulation of a cell signalling system. 2023.

ZLÍNSKÁ, Vladimíra, Vaclav MATOUSEK, Lukáš TRANTÍREK and Riccardo RIGO. Fluorine Labeling as a Versatile Tool for Probing Nucleic Acid Folding and Interactions by NMR Spectroscopy. ALDRICHIMICA ACTA. UNITED STATES: ALDRICH CHEMICAL CO INC, 2022, vol. 55, No 2, p. 45-52. ISSN 0002-5100.

KEJNOVSKA, I., P. STADLBAUER, Lukáš TRANTÍREK, D. RENCIUK, Martin GAJARSKÝ, Daniel KRAFČÍK, J. PALACKY, K. BEDNAROVA, J. SPONER, J.L. MERGNY and M. VORLICKOVA. G-Quadruplex Formation by DNA Sequences Deficient in Guanines: Two Tetrad Parallel Quadruplexes Do Not Fold Intramolecularly. Chemistry - A European Journal. WEINHEIM: Wiley, 2021, vol. 27, No 47, p. 12115-12125. ISSN 0947-6539. Available from: https://dx.doi.org/10.1002/chem.202100895.

BROFT, P., Šimon DŽATKO, Michaela KRAFČÍKOVÁ, A. WACKER, Robert HANSEL-HERTSCH, Volker DOTSCH, Lukáš TRANTÍREK and Harald SCHWALBE. In-Cell NMR Spectroscopy of Functional Riboswitch Aptamers in Eukaryotic Cells. Angewandte Chemie International Edition. Weinheim: Wiley-VCH Verlag, 2021, vol. 60, No 2, p. 865-872, 10 pp. ISSN 1433-7851. Available from: https://dx.doi.org/10.1002/anie.202007184.

LENARČIČ ŽIVKOVIĆ, Martina, Martin GAJARSKÝ, Kateřina BEKOVÁ, P. STADLBAUER, Lukáš VICHEREK, M. PETROVA, Radovan FIALA, I. ROSENBERG, Jiří ŠPONER, J. PLAVEC and Lukáš TRANTÍREK. Insight into formation propensity of pseudocircular DNA G-hairpins. Nucleic acids research. Oxford: Oxford University Press, 2021, vol. 49, No 4, p. 2317-2332. ISSN 0305-1048. Available from: https://dx.doi.org/10.1093/nar/gkab029.

CHENG, Mingpan, Dehui QIU, Liezel TAMON, Eva IŠTVÁNKOVÁ, Pavlína VÍŠKOVÁ, Samir AMRANE, Aurore GUÉDIN, Jielin CHEN, Laurent LACROIX, Huangxian JU, Lukáš TRANTÍREK, Aleksandr B. SAHAKYAN, Jun ZHOU and Jean-Louis MERGNY. Thermal and pH stabilities of i‐DNA: confronting in vitro experiments with models and in‐cell NMR data. ANGEWANDTE CHEMIE-INTERNATIONAL EDITION. Wiley-VCH Verlag GmbH, 2021, vol. 60, No 18, p. 10286-10294. ISSN 1433-7851. Available from: https://dx.doi.org/10.1002/anie.202016801.

KRAFČÍK, Daniel, Eva IŠTVÁNKOVÁ, Šimon DŽATKO, Pavlína VÍŠKOVÁ, S. FOLDYNOVA-TRANTIRKOVA and Lukáš TRANTÍREK. Towards Profiling of the G-Quadruplex Targeting Drugs in the Living Human Cells Using NMR Spectroscopy. International Journal of Molecular Sciences. Basel: Multidisciplinary Digital Publishing Institute, 2021, vol. 22, No 11, p. 6042-6055. ISSN 1422-0067. Available from: https://dx.doi.org/10.3390/ijms22116042.

ŠKOLÁKOVÁ, Petra, Zahra BADRI, Silvie TRANTÍRKOVÁ, Jan RYNEŠ, Jiří ŠPONER, Miloslava FOJTOVÁ, Jiří FAJKUS, Radek MAREK, Michaela VORLÍČKOVÁ, Jean-Louis MERGNY and Lukáš TRANTÍREK. Composite 5-methylations of cytosines modulate i-motif stability in a sequence-specific manner: Implications for DNA nanotechnology and epigenetic regulation of plant telomeric DNA. BBA - General Subjects. Elsevier B.V., 2020, vol. 1864, No 9, p. 129651-129659. ISSN 0304-4165. Available from: https://dx.doi.org/10.1016/j.bbagen.2020.129651.

PALUŠOVÁ, Veronika, Tereza RENZOVÁ, Amandine VERLANDE, Tereza VACLOVÁ, Michaela MEDKOVÁ, Linda CETLOVÁ, Miroslava SEDLÁČKOVÁ, Hana HŘÍBKOVÁ, Iva SLANINOVÁ, Miriama KRUTÁ, Vladimír ROTREKL, Hana UHLIROVA, Aneta KRIZOVA, Radim CHMELIK, Pavel VESELY, Michaela KRAFČÍKOVÁ, Lukáš TRANTÍREK, Kay Oliver SCHINK and Stjepan ULDRIJAN. Dual Targeting of BRAF and mTOR Signaling in Melanoma Cells with Pyridinyl Imidazole Compounds. Cancers. BASEL: MDPI, 2020, vol. 12, No 6, p. 1-24. ISSN 2072-6694. Available from: https://dx.doi.org/10.3390/cancers12061516.

GREGOR, Tomáš, Michaela BOSÁKOVÁ, Alexandru NITĂ, Sara POOVAKULATHU ABRAHAM, Bohumil FAFÍLEK, Nicole ČERNOHORSKÁ, Jan RYNEŠ, Silvie TRANTÍRKOVÁ, Daniela ŽÁČKOVÁ, Jiří MAYER, Lukáš TRANTÍREK and Pavel KREJČÍ. Elucidation of protein interactions necessary for the maintenance of the BCR-ABL signaling complex. Cellular and molecular life sciences. BASEL: SPRINGER BASEL AG, 2020, vol. 77, No 19, p. 3885-3903. ISSN 1420-682X. Available from: https://dx.doi.org/10.1007/s00018-019-03397-7.

GIASSA, Ilektra-Chara, Andrea VAVRINSKÁ, Jiří ZELINKA, Jakub ŠEBERA, Vladimír SYCHROVSKÝ, Rolf BOELENS, Radovan FIALA and Lukáš TRANTÍREK. HERMES - A Software Tool for the Prediction and Analysis of Magnetic-Field-Induced Residual Dipolar Couplings in Nucleic Acids. ChemPlusChem. Weinheim: Wiley - Verlag Chemie, 2020, vol. 85, No 9, p. 2177-2185. ISSN 2192-6506. Available from: https://dx.doi.org/10.1002/cplu.202000505.

DŽATKO, Šimon, Radovan FIALA, R. HANSEL-HERTSCH, Silvie TRANTÍRKOVÁ and Lukáš TRANTÍREK. In-cell NMR Spectroscopy of Nucleic Acids. IN-CELL NMR SPECTROSCOPY: FROM MOLECULAR SCIENCES TO CELL BIOLOGY. CAMBRIDGE: ROYAL SOC CHEMISTRY, 2020, vol. 21, No 2020, p. 272-297. ISSN 2044-253X. Available from: https://dx.doi.org/10.1039/9781788013079.

JURIKOVA, K., Martin GAJARSKÝ, M. HAJIKAZEMI, J. NOSEK, K. PROCHAZKOVA, K. PAESCHKE, Lukáš TRANTÍREK and L. TOMASKA. Role of folding kinetics of secondary structures in telomeric G-overhangs in the regulation of telomere maintenance inSaccharomyces cerevisiae. Journal of Biological Chemistry. Bethesda, USA: Amer. Soc. Biochem. Mol. Biol., 2020, vol. 295, No 27, p. 8958-8971. ISSN 0021-9258. Available from: https://dx.doi.org/10.1074/jbc.RA120.012914.

HARNOŠ, Jakub, M.C.A. CANIZAL, Miroslav JURÁSEK, Jitender KUMAR, Cornelia HOLLER, Alexandra SCHAMBONY, Kateřina HANÁKOVÁ, Ondřej BERNATÍK, Zbyněk ZDRÁHAL, Kristína GÖMÖRYOVÁ, Tomáš GYBEĽ, Tomasz Witold RADASZKIEWICZ, Marek KRAVEC, Lukáš TRANTÍREK, Jan RYNEŠ, Zankruti DAVE, Ana Iris FERNANDEZ-LLAMAZARES, Robert VÁCHA, Konstantinos TRIPSIANES, Carsten HOFFMANN and Vítězslav BRYJA. Dishevelled-3 conformation dynamics analyzed by FRET-based biosensors reveals a key role of casein kinase 1. Nature Communications. London: Nature Publishing Group, 2019, vol. 10, APR 18 2019, p. 1-18. ISSN 2041-1723. Available from: https://dx.doi.org/10.1038/s41467-019-09651-7.

BOSÁKOVÁ, Michaela, Alexandru NITĂ, Tomáš GREGOR, Miroslav VAŘECHA, Iva GUDERNOVÁ, Bohumil FAFÍLEK, Tomáš BÁRTA, Neha BASHEER, Sara POOVAKULATHU ABRAHAM, Lukáš BÁLEK, Markéta TOMANOVÁ, Jana FIALOVÁ KUČEROVÁ, Juraj BOSÁK, David POTĚŠIL, Jennifer ZIEBA, Jieun SONG, Peter KONIK, Sohyun PARK, Ivan DURAN, Zbyněk ZDRÁHAL, David ŠMAJS, Gert JANSEN, Zheng FU, Hyuk Wan KO, Aleš HAMPL, Lukáš TRANTÍREK, Deborah KRAKOW and Pavel KREJČÍ. Fibroblast growth factor receptor influences primary cilium length through an interaction with intestinal cell kinase. Proceedings of the National Academy of Sciences of the United States of America. WASHINGTON: NATL ACAD SCIENCES, 2019, vol. 116, No 10, p. 4316-4325. ISSN 0027-8424. Available from: https://dx.doi.org/10.1073/pnas.1800338116.

KRAFČÍKOVÁ, Michaela, R. HANSEL-HERTSCH, Lukáš TRANTÍREK and Silvie TRANTÍRKOVÁ. In Cell NMR Spectroscopy: Investigation of G-Quadruplex Structures Inside Living Xenopus laevis Oocytes. G-QUADRUPLEX NUCLEIC ACIDS: METHODS AND PROTOCOLS. TOTOWA: HUMANA PRESS INC, 2019, vol. 2035, No 2019, p. 397-405. ISSN 1064-3745. Available from: https://dx.doi.org/10.1007/978-1-4939-9666-7_25.

VÍŠKOVÁ, Pavlína, Daniel KRAFČÍK, Lukáš TRANTÍREK and Silvie TRANTÍRKOVÁ. In-Cell NMR Spectroscopy of Nucleic Acids in Human Cells. Current Protocols in Nucleic Acid Chemistry. United States: Wiley-Liss Inc, 2019, vol. 76, No 1, p. 1-14. ISSN 1934-9270. Available from: https://dx.doi.org/10.1002/cpnc.71.

KRAFČÍKOVÁ, Michaela, Šimon DŽATKO, C. CARON, A. GRANZHAN, Radovan FIALA, Tomáš LOJA, M.P. TEULADE-FICHOU, T. FESSL, R. HANSEL-HERTSCH, J.L. MERGNY, S. FOLDYNOVA-TRANTIRKOVA and Lukáš TRANTÍREK. Monitoring DNA-Ligand Interactions in Living Human Cells Using NMR Spectroscopy. Journal of the American Chemical Society. Washington: American Chemical Society, 2019, vol. 141, No 34, p. 13281-13285. ISSN 0002-7863. Available from: https://dx.doi.org/10.1021/jacs.9b03031.

STADLBAUER, P., P. KUHROVA, Lukáš VICHEREK, P. BANAS, M. OTYEPKA, Lukáš TRANTÍREK and Jiří ŠPONER. Parallel G-triplexes and G-hairpins as potential transitory ensembles in the folding of parallel-stranded DNA G-Quadruplexes. Nucleic acids research. Oxford: Oxford University Press, 2019, vol. 47, No 14, p. 7276-7293. ISSN 0305-1048. Available from: https://dx.doi.org/10.1093/nar/gkz610.

GIASSA, Ilektra-Chara, Jan RYNEŠ, T. FESSL, Silvie TRANTÍRKOVÁ and Lukáš TRANTÍREK. Advances in the cellular structural biology of nucleic acids. FEBS LETTERS. HOBOKEN: WILEY, 2018, vol. 592, No 12, p. 1997-2011. ISSN 1873-3468. Available from: https://dx.doi.org/10.1002/1873-3468.13054.

HARNOŠ, Jakub, Jan RYNEŠ, Pavlína VÍŠKOVÁ, Silvie TRANTÍRKOVÁ, Lola Murielle BAJARD ÉP.ESNER, Lukáš TRANTÍREK and Vítězslav BRYJA. Analysis of binding interfaces of the human scaffold protein AXIN1 by peptide microarrays. Journal of Biological Chemistry. Bethesda, USA: Amer. Soc. Biochem. Mol. Biol., 2018, vol. 293, No 42, p. 16337-16347. ISSN 0021-9258. Available from: https://dx.doi.org/10.1074/jbc.RA118.005127.

DŽATKO, Šimon, Michaela KRAFČÍKOVÁ, R. HANSEL-HERTSCH, T. FESSL, Radovan FIALA, Tomáš LOJA, Daniel KRAFČÍK, J.L. MERGNY, Silvie TRANTÍRKOVÁ and Lukáš TRANTÍREK. Evaluation of the Stability of DNA i-Motifs in the Nuclei of Living Mammalian Cells. Angewandte Chemie International Edition. WEINHEIM (GERMANY): Verlag Chemie, 2018, vol. 57, No 8, p. 2165-2169. ISSN 1433-7851. Available from: https://dx.doi.org/10.1002/anie.201712284.

VERLANDE, Amandine, Michaela KRAFČÍKOVÁ, David POTĚŠIL, Lukáš TRANTÍREK, Zbyněk ZDRÁHAL, M. ELKALAF, J. TRNKA, Karel SOUČEK, N. RAUCH, J. RAUCH, W. KOLCH and Stjepan ULDRIJAN. Metabolic stress regulates ERK activity by controlling KSR-RAF heterodimerization. EMBO reports. Hoboken: Wiley-Blackwell, 2018, vol. 19, No 2, p. 320-336. ISSN 1469-221X. Available from: https://dx.doi.org/10.15252/embr.201744524.

BÁLEK, Lukáš, Marcela BUCHTOVÁ, Michaela BOSÁKOVÁ, Miroslav VAŘECHA, Silvie TRANTÍRKOVÁ, Iva GUDERNOVÁ, Iva VESELÁ, Jan HAVLIK, Jitka NEBURKOVA, Stuart TURNER, Mateusz Adam KRZYSCIK, Malgorzata ZAKRZEWSKA, Lars KLIMASCHEWSKI, Peter CLAUS, Lukáš TRANTÍREK, Petr CIGLER and Pavel KREJČÍ. Nanodiamonds as "artificial proteins": Regulation of a cell signalling system using low nanomolar solutions of inorganic nanocrystals. Biomaterials. OXFORD: ELSEVIER SCI LTD, 2018, vol. 176, SEP 2018, p. 106-121. ISSN 0142-9612. Available from: https://dx.doi.org/10.1016/j.biomaterials.2018.05.030.

TRANTÍREK, Lukáš. NMR spectroscopy of nucleic acids in human cells. In 43rd FEBS Congress Prague. 2018. ISSN 2211-5463.

FAFÍLEK, Bohumil, Lukáš BÁLEK, Michaela BOSÁKOVÁ, Miroslav VAŘECHA, Alexandru NITĂ, Tomáš GREGOR, Iva GUDERNOVÁ, Jitka KŘENOVÁ, S. GHOSH, Martin PISKÁČEK, Lucie JONATOVA, Nicole ČERNOHORSKÁ, J.T. ZIEBA, M. KOSTAS, E.M. HAUGSTEN, J. WESCHE, C. ERNEUX, Lukáš TRANTÍREK, D. KRAKOW and Pavel KREJČÍ. The inositol phosphatase SHIP2 enables sustained ERK activation downstream of FGF receptors by recruiting Src kinases. SCIENCE SIGNALING. WASHINGTON: AMER ASSOC ADVANCEMENT SCIENCE, 2018, vol. 11, No 548, p. 1-14. ISSN 1945-0877. Available from: https://dx.doi.org/10.1126/scisignal.aap8608.

CSUKASI, F., I. DURAN, M. BARAD, Tomáš BÁRTA, Iva GUDERNOVÁ, Lukáš TRANTÍREK, J.H. MARTIN, C.Y. KUO, J. WOODS, H. LEE, D.H. COHN, Pavel KREJČÍ and D. KRAKOW. The PTH/PTHrP-SIK3 pathway affects skeletogenesis through altered mTOR signaling. Science Translational Medicine. Washington: American Association for the Advancement of Science, 2018, vol. 10, No 459, p. 1-11. ISSN 1946-6234. Available from: https://dx.doi.org/10.1126/scitranslmed.aat9356.

DŽATKO, Šimon, Michaela KRAFČÍKOVÁ, Radovan FIALA, Tomáš FESSL, Tomáš LOJA, C. CARON, A. GRANZHAN, M.P. TEULADE FICHOU, J.L. MERGNY, Silvie TRANTÍRKOVÁ and Lukáš TRANTÍREK. Cellular structural biology of nucleic acids. In 42nd FEBS Congress, Jerusalem, Izrael, září 2017 in The FEBS Journal (2017). 2017. ISSN 1742-464X.

KEJNOVSKÁ, Iva, Klára BEDNÁŘOVÁ, Daniel RENČIUK, Zuzana DVOŘÁKOVÁ, Petra ŠKOLÁKOVÁ, Lukáš TRANTÍREK, Radovan FIALA, Michaela VORLÍČKOVÁ and J. SAGI. Clustered abasic lesions profoundly change the structure and stability of human telomeric G-quadruplexes. Nucleic Acids Research. Oxford: Oxford University Press, 2017, vol. 45, No 8, p. 4294-4305. ISSN 0305-1048. Available from: https://dx.doi.org/10.1093/nar/gkx191.

RENCIUK, D., Jan RYNEŠ, I. KEJNOVSKA, Silvie TRANTÍRKOVÁ, Michael ANDÄNG, Lukáš TRANTÍREK and M. VORLICKOVA. G-quadruplex formation in the Oct4 promoter positively regulates Oct4 expression. BIOCHIMICA ET BIOPHYSICA ACTA-GENE REGULATORY MECHANISMS. AMSTERDAM: ELSEVIER SCIENCE BV, 2017, vol. 1860, No 2, p. 175-183. ISSN 1874-9399. Available from: https://dx.doi.org/10.1016/j.bbagrm.2016.11.002.

GUDERNOVÁ, Iva, Lukáš BÁLEK, Miroslav VAŘECHA, Jana FIALOVÁ KUČEROVÁ, Michaela BOSÁKOVÁ, Bohumil FAFÍLEK, Veronika PALUŠOVÁ, Stjepan ULDRIJAN, Lukáš TRANTÍREK and Pavel KREJČÍ. Inhibitor repurposing reveals ALK, LTK, FGFR, RET and TRK kinases as the targets of AZD1480. Oncotarget. New York: Impact Journals LLC, 2017, vol. 8, No 65, p. 109319-109331. ISSN 1949-2553. Available from: https://dx.doi.org/10.18632/oncotarget.22674.

NIKLASSON, M., G. MADDALO, Zuzana ŠRÁMKOVÁ, E. MUTLU, S. WEE, Petra SEKYROVÁ, L. SCHMIDT, N. FRITZ, I. DEHNISCH, G. KYRIATZIS, Michaela KRAFČÍKOVÁ, B.B. CARSON, J.M. FEENSTRA, V.D. MARINESCU, A. SEGERMAN, M. HARALDSSON, A.L. GUSTAVSSON, L.G.J. HAMMARSTROM, A.J. JENSEN, L. UHRBOM, A.F.M. ALTELAAR, S. LINNARSSON, P. UHLEN, Lukáš TRANTÍREK, C.T. VINCENT, S. NELANDER, P.O. ENGER and Michael ANDÄNG. Membrane-Depolarizing Channel Blockers Induce Selective Glioma Cell Death by Impairing Nutrient Transport and Unfolded Protein/Amino Acid Responses. Cancer Research. PHILADELPHIA: AMER ASSOC CANCER RESEARCH, 2017, vol. 77, No 7, p. 1741-1752. ISSN 0008-5472. Available from: https://dx.doi.org/10.1158/0008-5472.CAN-16-2274.

LINKE, F., M. HARENBERG, M.M. NIETERT, S. ZAUNIG, von Bonin F., A. ARLT, M. SZCZEPANOWSKI, HA WEICH, S. LUTZ, C. DULLIN, Pavlína JANOVSKÁ, Michaela KRAFČÍKOVÁ, Lukáš TRANTÍREK, Petra OVESNÁ, W. KLAPPER, T. BEISSBARTH, F. ALVES, Vítězslav BRYJA, L. TRÜMPER, J. WILTING and Dieter KUBE. Microenvironmental interactions between endothelial and lymphoma cells: a role for the canonical WNT pathway in Hodgkin lymphoma. Leukemia. London: Nature Publishing Group, 2017, vol. 31, No 2, p. 361-372. ISSN 0887-6924. Available from: https://dx.doi.org/10.1038/leu.2016.232.

GUDERNOVÁ, Iva, Silvie TRANTÍRKOVÁ, Barbora EL GHANNAMOVÁ, Bohumil FAFÍLEK, Miroslav VAŘECHA, Lukáš BÁLEK, Eva HRUBÁ, Lucie JONÁTOVÁ, Iva JELÍNKOVÁ, Michaela BOSÁKOVÁ, Lukáš TRANTÍREK, Jiří MAYER and Pavel KREJČÍ. One reporter for in-cell activity profiling of majority of protein kinase oncogenes. eLife. Cambridge: eLife Sciences Publications Ltd., 2017, vol. 6, "e21536", p. 1-14. ISSN 2050-084X. Available from: https://dx.doi.org/10.7554/eLife.21536.

GAJARSKÝ, Martin, Martina Lenarcic ZIVKOVIC, Petr STADLBAUER, Bruno PAGANO, Radovan FIALA, Jussara AMATO, L´ubomir TOMASKA, Jiří ŠPONER, Janez PLAVEC and Lukáš TRANTÍREK. Structure of a Stable G-Hairpin. Journal of the American Chemical Society. WASHINGTON: American Chemical Society, 2017, vol. 139, No 10, p. 3591-3594. ISSN 0002-7863. Available from: https://dx.doi.org/10.1021/jacs.6b10786.

RYNEŠ, Jan, T. FESSL, Michaela KRAFČÍKOVÁ, Lukáš TRANTÍREK and Silvie TRANTÍRKOVÁ. Structure-activity relationships in polymorphic G-quadruplex forming segment of c-MYC promoter. In 42nd Congress of the Federation-of-European-Biochemical-Societies (FEBS) on From Molecules to Cells and Back. 2017. ISSN 1742-464X.

GREGOR, Tomáš, Jan RYNEŠ, Silvie TRANTÍRKOVÁ, Jiří MAYER, Pavel KREJČÍ and Lukáš TRANTÍREK. Systematic analysis of BCR-ABL interactome in chronic myeloid leukemia. In 42nd Congress of the Federation-of-European-Biochemical-Societies (FEBS) on From Molecules to Cells and Back. 2017. ISSN 1742-464X.

TAYLOR, S. Paige, Michaela BOSÁKOVÁ, Miroslav VAŘECHA, Lukáš BÁLEK, Tomáš BÁRTA, Lukáš TRANTÍREK, Iva JELÍNKOVÁ, Ivan DURAN, Iva VESELÁ, Kimberly N. FORLENZA, Jorge H. MARTIN, Aleš HAMPL, Michael BAMSHAD, Deborah NICKERSON, Margie L. JAWORSKI, Jieun SONG, Hyuk WAN KO, Daniel H. COHN, Deborah KRAKOW and Pavel KREJČÍ. An inactivating mutation in intestinal cell kinase, ICK, impairs hedgehog signalling and causes short rib-polydactyly syndrome. Human Molecular Genetics. Oxford: Oxford University Press, 2016, vol. 25, No 18, p. 3998-4011. ISSN 0964-6906. Available from: https://dx.doi.org/10.1093/hmg/ddw240.

VAVRINSKÁ, Andrea, Jiří ZELINKA, Jakub ŠEBERA, Vladimír SYCHROVSKÝ, Radovan FIALA, Rolf BOELENS, Vladimír SKLENÁŘ and Lukáš TRANTÍREK. Impact of nucleic acid self-alignment in a strong magnetic field on the interpretation of indirect spin–spin interactions. Journal of biomolecular NMR. Dordrecht: Springer, 2016, vol. 64, No 1, p. 53-62. ISSN 0925-2738. Available from: https://dx.doi.org/10.1007/s10858-015-0005-x.

VERLANDE, Amandine, David POTĚŠIL, Zbyněk ZDRÁHAL, Michaela KRAFČÍKOVÁ, Lukáš TRANTÍREK, Karel SOUČEK, Jan TRNKA, W KOLCH and M ELKALAF. KSR proteins link metabolic changes to the MAPK/ERK pathway. In EACR 24: from basic research to precision medicine, Central Convention Complex, Manchester, UK, July 9-12, 2016, poster presentation. 2016.

SLANINOVA, Vera, Michaela KRAFČÍKOVÁ, Raquel PEREZ-GOMEZ, Pavel STEFFAL, Lukáš TRANTÍREK, Sarah J. BRAY and Alena KREJCI. Notch stimulates growth by direct regulation of genes involved in the control of glycolysis and the tricarboxylic acid cycle. OPEN BIOLOGY. LONDON: ROYAL SOC, 2016, vol. 6, No 2, p. nestránkováno, 14 pp. ISSN 2046-2441. Available from: https://dx.doi.org/10.1098/rsob.150155.

KANT, Sarina G., Iveta ČERVENKOVÁ, Lukáš BÁLEK, Lukáš TRANTÍREK, Gijs W. E. SANTEN, Martine C. de VRIES, Hermine A. van DUYVENVOORDE, Michiel J. R. van der WIELEN, Annemieke J. M. H. VERKERK, André G. UITTERLINDEN, Sabine E. HANNEMA, Jan M. WIT, Wilma OOSTDIJK, Pavel KREJČÍ and Monique LOSEKOOT. A novel variant of FGFR3 causes proportionate short stature. European Journal od Endocrinology. Bristol: Bioscientifica LTD, 2015, vol. 172, No 6, p. 763-770. ISSN 0804-4643. Available from: https://dx.doi.org/10.1530/EJE-14-0945.

KAŠPAROVÁ, Helena, Zuzana DVOŘÁKOVÁ, Daniel RENČIUK, Klára BEDNÁŘOVÁ, Iva KEJNOVSKÁ, Lukáš TRANTÍREK, Michaela VORLÍČKOVÁ and Janos SAGI. Diverse effects of naturally occurring base lesions on the structure and stability of the human telomere DNA quadruplex. Biochimie. Paris: Elsevier France- editions Scientifiques Medicales Elsevier, 2015, vol. 118, Nov, p. 15-25. ISSN 0300-9084. Available from: https://dx.doi.org/10.1016/j.biochi.2015.07.013.

STADLBAUER, Petr, Petra KUHROVÁ, Pavel BANÁŠ, Jaroslav KOČA, Giovanni BUSSI, Lukáš TRANTÍREK, Michal OTYEPKA and Jiří ŠPONER. Hairpins participating in folding of human telomeric sequence quadruplexes studied by standard and T-REMD simulations. Nucleic Acids Research. Oxford: Oxford University Press, 2015, vol. 43, No 20, p. 9626-9644. ISSN 0305-1048. Available from: https://dx.doi.org/10.1093/nar/gkv994.

BUCHTOVÁ, marcela, Radka CHALOUPKOVÁ, Malgorzata ZAKRZEWSKA, Iva VESELÁ, Petra CELÁ, Jana BARÁTHOVÁ, Iva GUDERNOVÁ, Renata ZAJICKOVA, Lukáš TRANTÍREK, Jorge MARTIN, Martin KOSTAS, Jacek OTLEWSKI, Jiří DAMBORSKÝ, Alois KOZUBÍK, Antoni WIEDLOCHA and Pavel KREJČÍ. Instability restricts signaling of multiple fibroblast growth factors. Cellular and Molecular Life Sciences. Basel: Springer, 2015, vol. 72, No 12, p. 2445-2459. ISSN 1420-682X. Available from: https://dx.doi.org/10.1007/s00018-015-1856-8.

ŠKOLÁKOVÁ, Petra, Silvie TRANTÍRKOVÁ, Klára BEDNÁŘOVÁ, Radovan FIALA, Michaela VORLÍČKOVÁ and Lukáš TRANTÍREK. Unique C. elegans telomeric overhang structures reveal the evolutionarily conserved properties of telomeric DNA. Nucleic Acids Research. Oxford, UK: Oxford Press, 2015, vol. 43, No 9, p. 4733-4745. ISSN 0305-1048. Available from: https://dx.doi.org/10.1093/nar/gkv296.

BOSÁKOVÁ, Michaela, Pavel KREJČÍ, Lukáš TRANTÍREK and Petr DVOŘÁK. FGF19/BETA-KLOTHO REGULATE PHYSIOLOGY AND DIFFERENTIATION OF HUMAN PLURIPOTENT STEM CELLS. In ISSCR 12th Annual Meeting, Vancouver, Canada, June 18-21 2014. 2014.

BERNATÍK, Ondřej, Kateřina ŠEDOVÁ, Carolin SCHILLE, Sri Ranjani GANJI, Igor ČERVENKA, Lukáš TRANTÍREK, Alexandra SCHAMBONY, Zbyněk ZDRÁHAL and Vítězslav BRYJA. Functional Analysis of Dishevelled-3 Phosphorylation Identifies Distinct Mechanisms Driven by Casein Kinase 1 epsilon and Frizzled5. Journal of Biological Chemistry. Bethesda, USA: Amer. Soc. Biochem. Mol. Biol., 2014, vol. 289, No 34, p. 23520-23533. ISSN 0021-9258. Available from: https://dx.doi.org/10.1074/jbc.M114.590638.

HANSEL, Robert, Laura M. LUH, Ivan CORBERSKI, Lukáš TRANTÍREK and Volker DOTSCH. In-Cell NMR and EPR Spectroscopy of Biomacromolecules. Angewandte Chemie International Edition. Weinheim, Germany: Wiley-VCH Verlag GmbH & Co., 2014, vol. 53, No 39, p. 10300-10314. ISSN 1433-7851. Available from: https://dx.doi.org/10.1002/anie.201311320.

ŠEBERA, Jakub, Lukáš TRANTÍREK, Jiří FUKAL, Yoshiyuki TANAKA and Vladimír SYCHROVSKÝ. MECHANISM OF BASE EXCISION WITH THE hOGG1 DNA REPAIR ENZYME. Chemické listy. Praha: Česká společnost chemická, 2014, vol. 108, No 4, p. 364-367. ISSN 0009-2770.

VERLANDE, Amandine, Michaela KRAFČÍKOVÁ, Lukáš TRANTÍREK, I JELÍNKOVÁ, Alena HYRŠLOVÁ VACULOVÁ and Stjepan ULDRIJAN. Modulation of melanoma metabolism and viability with hexokinase and mitochondrial complex I inhibitors. In EMBO conference: Cellular signaling and cancer therapy, Hotel Croatia, Cavtat, Croatia, May 23-27, 2014, poster presentation. 2014.

ŠEBERA, Jakub, Lukáš TRANTÍREK, Y. TANAKA, R. NENCKA, J. FUKAL and V. SYCHROVSKÝ. The activation of N-glycosidic bond cleavage performed by base-excision repair enzyme hOGG1; theoretical study of the role of Lys 249 residue in activation of G, OxoG and FapyG. RSC Advances. Cambridge: Royal Society of Chemistry, 2014, vol. 4, No 83, p. 44043-44051. ISSN 2046-2069. Available from: https://dx.doi.org/10.1039/c4ra08278h.

STADLBAUER, Petr, Lukáš TRANTÍREK, Thomas E. CHEATHAM III., Jaroslav KOČA and Jiří ŠPONER. Triplex intermediates in folding of human telomeric quadruplexes probed by microsecond-scale molecular dynamics simulations. Biochimie. Paris: ELSEVIER FRANCE-EDITIONS SCIENTIFIQUES MEDICALES ELSEVIER, 2014, 105c, October, p. 22-35. ISSN 0300-9084. Available from: https://dx.doi.org/10.1016/j.biochi.2014.07.009.

KREJČÍ, Pavel, Michaela KUNOVÁ, Iva KUBÍKOVÁ, Lukáš TRANTÍREK, Alois KOZUBÍK and Petr DVOŘÁK. Expression of FGF19 in Human Embryonic Stem Cells. STEM CELLS. HOBOKEN: WILEY-BLACKWELL, 2013, vol. 31, No 11, p. 2582-2584. ISSN 1066-5099. Available from: https://dx.doi.org/10.1002/stem.1493.

HAENSEL, Robert, Frank LOEHR, Lukáš TRANTÍREK and Volker DOETSCH. High-Resolution Insight into G-Overhang Architecture. Journal of the American Chemical Society. Washington: American Chemical Society, 2013, vol. 135, No 7, p. 2816-2824. ISSN 0002-7863. Available from: https://dx.doi.org/10.1021/ja312403b.

EMMER, Jiří, Andrea VAVRINSKÁ, Vladimír SYCHROVSKÝ, Ladislav BENDA, Zdeněk KŘÍŽ, Jaroslav KOČA, Rolf BOELENS, Vladimír SKLENÁŘ and Lukáš TRANTÍREK. Influence of the O-phosphorylation of serine, threonine and tyrosine in proteins on the amidic N-15 chemical shielding anisotropy tensors. Journal of biomolecular NMR. Dordrecht: Springer, 2013, vol. 55, No 1, p. 59-70. ISSN 0925-2738. Available from: https://dx.doi.org/10.1007/s10858-012-9686-6.

FIALA, Radovan, Naděžda ŠPAČKOVÁ, Silvie FOLDYNOVÁ-TRANTÍRKOVÁ, Jiří ŠPONER, Vladimír SKLENÁŘ and Lukáš TRANTÍREK. NMR cross-­correlated relaxation rates reveal ion coordination sites in DNA. Journal of the American Chemical Society. Washington, DC., USA: American Chemical Society, 2011, vol. 133, No 35, p. 13790-13793. ISSN 0002-7863. Available from: https://dx.doi.org/10.1021/ja202397p.

FOLDYNOVÁ-TRANTÍRKOVÁ, S., P. SEKYROVÁ, Kateřina TMEJOVÁ, E. BRUMOVSKÁ, Ondřej BERNATÍK, W. BLANKENFELDT, Pavel KREJČÍ, Alois KOZUBÍK, T. DOLEZAL, Lukáš TRANTÍREK and Vítězslav BRYJA. Breast cancer-specific mutations in CK1epsilon inhibit Wnt/beta-catenin and activate the Wnt/Rac1/JNK and NFAT pathways to decrease cell adhesion and promote cell migration. Breast Cancer Research. London, Great Britain: Biomed Central Ltd., 2010, vol. 2010, 12/3, p. 30-31. ISSN 1465-5411. Available from: https://dx.doi.org/10.1186/bcr2581.

KREJČÍ, Pavel, Shunichi MURAKAMI, Jiřina PROCHÁZKOVÁ, Lukáš TRANTÍREK, Katarína CHLEBOVÁ, Zhufeng OUYANG, Anie AKLIAN, Jiří SMUTNÝ, Vítězslav BRYJA, Alois KOZUBÍK and Wiliam R. WILCOX. Nf449 is a novel inhibitor of fibroblast growth factor receptor 3 (fgfr3) signaling active in chondrocytes and multiple myeloma cells. J. Biol. Chem. 2010, vol. 285, No 27, p. 20644-20653. ISSN 0021-9258. Available from: https://dx.doi.org/10.1074/jbc.M109.083626.

TRANTÍREK, Lukáš, Vladimír SKLENÁŘ and Radovan FIALA. Effect of Counter Ions on Cross-Correlated Relaxation Rates in Nucleic Acids. In XXIII International Conference on Magnetic Resonance in Biological Systems. San Diego: ICMRBS, 2008, p. 117.

TRANTÍREK, Lukáš, Erik CAHA, Pavel KADEŘÁVEK and Radovan FIALA. NMR 13C-relaxation Study of Base and Sugar Dynamics in GCAA RNA Hairpin Tetraloop. Journal of Biomolecular Structure and Dynamics. GUILDERLAND: Adenine Press, 2007, vol. 25, No 3, p. 307-326, 19 pp. ISSN 0739-1102.

TRANTÍREK, Lukáš, Richard ŠTEFL, James MASSE, Juli FEIGON and Vladimír SKLENÁŘ. Determination of the glycosidic torsion angels in uniformly C-13 labeled nucleic acids from vicinal coupling constants 3J(C2/4-H1') and 3J(C6/8-H1'). Journal of Biomolecular NMR. Dordrecht: Kluwer/Escom, 2002, vol. 23, No 1, p. 1-12. ISSN 0925-2738.

ŠTEFL, Richard, Lukáš TRANTÍREK, Michaela VORLÍČKOVÁ, Jaroslav KOČA, Vladimír SKLENÁŘ and Jaroslav KYPR. A-like Guanine-Guanine Stacking in the Aqueous DNA. Journal of Molecular Biology. USA: Academic Press, 2001, vol. 307, No 1, p. 513-524. ISSN 0022-2836.

TRANTÍREK, Lukáš, Kamila HYNKOVÁ, Yuji NAGATA, Alexey MURZIN, Alena ANSORGOVÁ, Vladimír SKLENÁŘ and Jiří DAMBORSKÝ. Reaction mechanism and stereochemistry of gamma-hexachlorocyclohexane dehydrochlorinase LinA. Journal of Biological Chemistry. 2001, vol. 276, No 11, p. 7734-7740.

TRANTÍREK, Lukáš, Milan URBÁŠEK, Richard ŠTEFL, Juli FEIGON and Vladimír SKLENÁŘ. A Method for Direct Determination of Helical Parameters in Nucleic Acids Using Residual Dipolar Couplings. Journal of the American Chemical Society. Washington, D.C.: American Chemical Society, 2000, vol. 122, No 42, p. 10454-10455. ISSN 0002-7863.

TRANTÍREK, Lukáš, Richard ŠTEFL, Michalea VORLÍČKOVÁ, Jaroslav KOČA, Vladimír SKLENÁŘ and Jaroslav KYPR. An A-type Double Helix of DNA Having B-type Puckering of the Deoxyribose Rings. Journal of Molecular Biology. USA: Academic Press, 2000, vol. 297, No 4, p. 907-922. ISSN 0022-2836.

DAMBORSKÝ, Jiří, Martina DAMBORSKÁ, Svatopluk ŠTÍPEK, Andrea JESENSKÁ, Lukáš TRANTÍREK and Vladimír SKLENÁŘ. Effect of the carbon source on assessment of degrading bacteria with the spread-plating technique during in situ bioremediation. Folia Microbiologica. 2000, vol. 45, No 1, p. 35-40. ISSN 0015-5632.