Výpis publikací

DIKUNOVÁ, Alžbeta; Nikola NOSKOVÁ; Jan H. OVERBECK; Martin POLÁK; David STELZIG; David ZAPLETAL; Karel KUBÍČEK; Jiří NOVÁČEK; Remco SPRANGERS a Richard ŠTEFL. Assembly of the Xrn2/Rat1–Rai1–Rtt103 termination complexes in mesophilic and thermophilic organisms. Structure. Cell Press, 2025, roč. 33, č. 2, s. 300-310. ISSN 0969-2126. Dostupné z: https://doi.org/10.1016/j.str.2024.11.010.

PETROVSKÝ, Jan; Sefkan POLAT; David ZAPLETAL; David BUCHTA; Nikola NOSKOVÁ; Karel KUBÍČEK; Dina GROHMANN a Richard ŠTEFL. How Argonautes engage with their protein binding partners. In The Argonautes 2025, Prague. 2025.

ŠEBESTA, Marek; Karel ŠKUBNÍK; William Shakespeare MORTON; Kateřina LINHARTOVÁ; Veronika KLÁPŠŤOVÁ; Jiří NOVÁČEK; Karel KUBÍČEK; Robert VÁCHA a Richard ŠTEFL. Mechanism of RNA polymerase II elongation complex condensation. In EMBO Workshop: In situ structural biology: expanding the toolbox for structural cell biology, Heidelberg. 2025.

ZAPLETAL, David; Nikola NOSKOVÁ; David BUCHTA; Jan PETROVSKÝ; Karel KUBÍČEK a Richard ŠTEFL. Uncovering the Assembly of the RISC-Loading Complex. In The Argonautes 2025, Prague. 2025.

KADEŘÁVEK, Pavel; Karel KUBÍČEK a Lukáš ŽÍDEK. Chapter 16 - Interactions among the three protein states. In Timir Tripathi and Vladimir N. Uversky. The Three Functional States of Proteins. Structured, Intrinsically Disordered, and Phase Separated. 525 B ST, STE 1900, SAN DIEGO, CA 92101-: Academic Press, 2024, s. 297-313. The Three Functional States of Proteins Structured, Intrinsically Disordered, and Phase Separated. ISBN 978-0-443-21809-5. Dostupné z: https://doi.org/10.1016/B978-0-443-21809-5.00022-3.

ŠEBESTA, Marek; Karel ŠKUBNÍK; William Shakespeare MORTON; Marek KRAVEC; Kateřina LINHARTOVÁ; Veronika KLÁPŠŤOVÁ; Jiří NOVÁČEK; Karel KUBÍČEK; Vítězslav BRYJA; Robert VÁCHA a Richard ŠTEFL. Mechanisms of transcription attenuation and condensation of RNA polymerase II by RECQ5 helicase. In 29th Annual International Conference RNA 2024, Edinburg. 2024.

ZAPLETAL, David; Karel KUBÍČEK; Petr SVOBODA a Richard ŠTEFL. Dicer structure and function: conserved and evolving features. EMBO reports. Wiley, 2023, roč. 24, č. 7, s. 1-13. ISSN 1469-221X. Dostupné z: https://doi.org/10.15252/embr.202357215.

PAPAGEORGIOU, Anna; Michaela POSPÍŠILOVÁ; Jakub CIBULKA; Raghib ASHRAF; Christopher WAUDBY; Pavel KADEŘÁVEK; Volha MAROZ; Karel KUBÍČEK; Zbyněk PROKOP; Lumír KREJČÍ a Konstantinos TRIPSIANES. Recognition and coacervation of G-quadruplexes by a multifunctional disordered region in RECQ4 helicase. Nature Communications. Berlin: Nature, 2023, roč. 14, č. 1, s. 1-19. ISSN 2041-1723. Dostupné z: https://doi.org/10.1038/s41467-023-42503-z.

KASILIAUSKAITE, Aiste; Karel KUBÍČEK; Tomáš KLUMPLER; Martina ZÁNOVÁ; David ZAPLETAL; Eliska KOUTNA; Jiří NOVÁČEK a Richard ŠTEFL. Cooperation between intrinsically disordered and ordered regions of Spt6 regulates nucleosome and Pol II CTD binding, and nucleosome assembly. Nucleic acids research. Oxford: Oxford University Press, 2022, roč. 50, č. 10, s. 5961-5973. ISSN 0305-1048. Dostupné z: https://doi.org/10.1093/nar/gkac451.

ZAPLETAL, David; Karel KUBÍČEK; Martina ZÁNOVÁ; Radek MALIK; Marek ŠEBESTA; Jiří NOVÁČEK; Petr SVOBODA a Richard ŠTEFL. Cryo-EM reveals the structural basis for the regulatory function of HEL1 domain in vertebrate DICERs. In Instruct Biennial Structural Biology ConferenceMuntgebouw, Utrecht, The Netherlands | 19-20 May, 2022. 2022.

ZAPLETAL, David; Eliska TABORSKA; Josef PASULKA; Radek MALIK; Karel KUBÍČEK; Martina ZÁNOVÁ; Christian MUCH; Marek ŠEBESTA; Valeria BUCCHERI; Filip HORVAT; Irena JENICKOVA; Michaela PROCHAZKOVA; Jan PROCHAZKA; Matyáš PINKAS; Jiří NOVÁČEK; Diego F JOSEPH; Radislav SEDLACEK; Carrie BERNECKY; Donal CARROLL; Richard ŠTEFL a Petr SVOBODA. Structural and functional basis of mammalian microRNA biogenesis by Dicer. Molecular Cell. CAMBRIDGE: CELL PRESS, 2022, roč. 82, č. 21, s. 4064-4079, 30 s. ISSN 1097-2765. Dostupné z: https://doi.org/10.1016/j.molcel.2022.10.010.

LINHARTOVÁ, Kateřina; Jakub MACOŠEK; Veronika JANŠTOVÁ; Eliška ŠMIŘÁKOVÁ; Karel KUBÍČEK a Richard ŠTEFL. Recognition of RNA Polymerase II C-terminal domain by RPRD2. In CEITEC PhD Conference. 2020.

HAN, Z.; Olga JASNOVIDOVA; N. HAIDARA; A. TUDEK; Karel KUBÍČEK; D. LIBRI; Richard ŠTEFL a O. PORRUA. Termination of non-coding transcription in yeast relies on both an RNA Pol II CTD interaction domain and a CTD-mimicking region in Sen1. EMBO Journal. Hoboken (USA): WILEY-BLACKWELL, 2020, roč. 39, č. 7, s. 101548-101569. ISSN 0261-4189. Dostupné z: https://doi.org/10.15252/embj.2019101548.

BRÁZDA, Pavel; Magdaléna KREJČÍKOVÁ; Aiste KASILIAUSKAITE; Eliška ŠMIŘÁKOVÁ; Tomáš KLUMPLER; Robert VÁCHA; Karel KUBÍČEK a Richard ŠTEFL. Yeast Spt6 Reads Multiple Phosphorylation Patterns of RNA Polymerase II C-Terminal Domain In Vitro. Journal of Molecular Biology. Academic Press, 2020, roč. 432, č. 14, s. 4092-4107. ISSN 0022-2836. Dostupné z: https://doi.org/10.1016/j.jmb.2020.05.007.

BRÁZDA, Pavel; Ondrej ŠEDO; Karel KUBÍČEK a Richard ŠTEFL. Efficient and robust preparation of tyrosine phosphorylated intrinsically disordered proteins. BioTechniques. UNITED HOUSE, 2 ALBERT PL, LONDON N3 1QB: FUTURE SCI LTD, 2019, roč. 67, č. 1, s. 16-22. ISSN 0736-6205. Dostupné z: https://doi.org/10.2144/btn-2019-0033.

HEMZAL, Dušan; Yu Ri KANG; Jan DVOŘÁK; Tomasz KABZINSKI; Karel KUBÍČEK; Kim YOUNG DONG a Josef HUMLÍČEK. Treatment of Surface Plasmon Resonance (SPR) Background in Total Internal Reflection Ellipsometry: Characterization of RNA Polymerase II Film Formation. APPLIED SPECTROSCOPY. Thousand Oaks: SAGE PUBLICATIONS INC, 2019, roč. 73, č. 3, s. 261-270. ISSN 0003-7028. Dostupné z: https://doi.org/10.1177/0003702819826280.

JASNOVIDOVA, Olga; Magdaléna KREJČÍKOVÁ; Karel KUBÍČEK a Richard ŠTEFL. Structural insight into recognition of phosphorylated threonine-4 of RNA polymerase II C-terminal domain by Rtt103p. EMBO reports. Hoboken: Wiley-Blackwell, 2017, roč. 18, č. 6, s. 906-913. ISSN 1469-221X. Dostupné z: https://doi.org/10.15252/embr.201643723.

JASNOVIDOVA, Olga; Tomáš KLUMPLER; Karel KUBÍČEK; Sergei KALYNYCH; Pavel PLEVKA a Richard ŠTEFL. Structure and dynamics of the RNAPII CTDsome with Rtt103. Proceeding of the National Academy of Sciences of the USA. The Academy, 2017, roč. 114, č. 42, s. 11133-11138. ISSN 0027-8424. Dostupné z: https://doi.org/10.1073/pnas.1712450114.

KREJČÍKOVÁ, Magdaléna; Konstantinos GKIONIS; Dušan HEMZAL; JA PLATTS; P PAPADIA; N MARGIOTTA; J SPONER a Karel KUBÍČEK. Combining NMR (Nuclear Magnetic Resonance) and Raman spectroscopy reveals structural and functional features of a new cisplatin derivative. 2016.

JASNOVIDOVA, Olga; Magdaléna KREJČÍKOVÁ; Karel KUBÍČEK a Richard ŠTEFL. Recognition of phosphorylated threonine-4 of RNA polymerase II C-terminal domain by 3 '-end processing apparatus. In 41st FEBS Congress on Molecular and Systems Biology for a Better Life. 2016. ISSN 1742-464X.

KUBÍČEK, Karel; Magdaléna KREJČÍKOVÁ; Pavel BRÁZDA; Eliška ŠMIŘÁKOVÁ; Jiří NOVÁČEK; Patrick CRAMER a Richard ŠTEFL. What are the key aspects of interaction between RNA polymerase II C-terminal domain phosphorylated on tyrosine-1 and the elongation factors. In 41st FEBS Congress on Molecular and Systems Biology for a Better Life. 2016. ISSN 1742-464X.

KŘENEK, Aleš; Karel KUBÍČEK; Richard ŠTEFL a Jiří FILIPOVIČ. Accurate Fitting SAXS Curves with NMR Structure Ensembles. Online. In Simon Lin, Vicky Huang. Proceedings of International Symposium on Grids and Clouds 2015. Pissa: Proceedings of Science, 2015, s. nestránkováno, 9 s. ISSN 1824-8039.

KLUMPLER, Tomáš; Tereza GERGURI; Olga JASNOVIDOVA; Lumír KREJČÍ; Karel KUBÍČEK; Daniel NĚMEČEK; Vojtěch SEDLÁČEK a Richard ŠTEFL. Biological Small Angle X-ray Scattering at CEITEC-MU. Materials Structure in Chemistry, Biology, Physics and Technology. Praha: Krystalografická společnost, 2015, roč. 22, č. 3, s. 127-132. ISSN 1211-5894.

NEČASOVÁ, Ivona; Tomáš KLUMPLER; Karel KUBÍČEK a Ctirad HOFR. Revisiting the role of TRF2 basic domain in chromatin maintenance with the most recent structural and functional approaches. In EMBO Workshop Telomeric chromatin and telomere fragility. 2015.

TUDEK, Agnieszka; Odil Porrua FUERTE; Tomasz KABZINSKI; Michael LIDSCHREIBER; Karel KUBÍČEK; Andrea FOŘTOVÁ; Francoise LACROUTE; Štěpánka VAŇÁČOVÁ; Patrick CRAMER; Richard ŠTEFL a Domenico LIBRI. Molecular Basis for Coordinating Transcription Termination with Noncoding RNA Degradation. Molecular Cell. CAMBRIDGE: CELL PRESS, 2014, roč. 55, č. 3, s. 467-481. ISSN 1097-2765. Dostupné z: https://doi.org/10.1016/j.molcel.2014.05.031.

BAČÍKOVÁ, Veronika; Josef PASULKA; Karel KUBÍČEK a Richard ŠTEFL. Structure and semi-sequence-specific RNA binding of Nrd1. Nucleic Acids Research. United Kingdom: Oxford University Press, 2014, roč. 42, č. 12, s. 8024-8038. ISSN 0305-1048. Dostupné z: https://doi.org/10.1093/nar/gku446.

PORRUA-FUERTE, Odil; Fruzsina HÓBOR; Jocelyne BOULAY; Karel KUBÍČEK; Yves D’AUBENTON-CARAFA; Rajani Kanth GUDIPATI; Richard ŠTEFL a Domenico LIBRI. In vivo SELEX reveals novel sequence and structural determinants of Nrd1-Nab3-Sen1 dependent transcription termination. EMBO Journal. NEW YORK: NATURE PUBLISHING GROUP, 2012, roč. 31, č. 19, s. 3935-3948. ISSN 0261-4189. Dostupné z: https://doi.org/10.1038/emboj.2012.237.

BYSTRICKÝ, Peter; Marie POKORNÁ; Karel KUBÍČEK; Lukáš ŽÍDEK a Michaela WIMMEROVÁ. NMR STUDY - RALSTONIA SOLANACEARUM LECTIN INTERACTIONS. In 2nd EAST NMR Young Investigator's meeting. 2012.

SUCHÁNKOVÁ, Tereza; Karel KUBÍČEK; Jana KAŠPÁRKOVÁ; Viktor BRABEC a Jiří KOZELKA. Platinum-DNA interstrand crosslinks: Molecular determinants of bending and unwinding of the double helix. Journal of Inorganic Biochemistry. New York, USA: Elsevier Science Inc, 2012, roč. 108, č. 1, s. 69-79. ISSN 0162-0134. Dostupné z: https://doi.org/10.1016/j.jinorgbio.2011.09.025.

BYSTRICKÝ, Peter; Marie POKORNÁ; Karel KUBÍČEK; Michaela WIMMEROVÁ a Lukáš ŽÍDEK. RALSTONIA SOLANACEARUM LECTIN INTERACTIONS, A NMR STUDY. In 26th Intenational Carbohydrate Symposium 2012 abstracts. 2012.

ŠIKORSKÝ, Tomáš; Fruzsina HÓBOR; Eva KRIŽANOVÁ; Josef PASULKA; Karel KUBÍČEK a Richard ŠTEFL. Recognition of asymmetrically dimethylated arginine by TDRD3. Nucleic Acids Research. Oxford: Oxford University Press, 2012, roč. 40, č. 22, s. 11748-11755. ISSN 0305-1048. Dostupné z: https://doi.org/10.1093/nar/gks929.

KUBÍČEK, Karel; Hana ČERNÁ; Peter HOLUB; Josef PASULKA; Dominika HROŠŠOVÁ; Frank LOEHR; Ctirad HOFR; Štěpánka VAŇÁČOVÁ a Richard ŠTEFL. Serine phosphorylation and proline isomerization in RNAP II CTD control recruitment of Nrd1. Genes & Development. New York: Cold Spring Harbor Laboratory Press, 2012, roč. 26, č. 17, s. 1891-1896. ISSN 0890-9369. Dostupné z: https://doi.org/10.1101/gad.192781.112.

BYSTRICKÝ, Peter; Karel KUBÍČEK; Marie POKORNÁ; Radovan FIALA a Michaela WIMMEROVÁ. NMR STUDY OF INTERACTIONS OF RALSTONIA SOLANACEARUM LECTIN. In XV. Setkání biochemiků a molekulárních biologů Sborník příspěvků. 2011. ISBN 978-80-210-5594-0.

BYSTRICKÝ, Peter; Karel KUBÍČEK; Marie POKORNÁ; Radovan FIALA a Michaela WIMMEROVÁ. NMR STUDY OF RALSTONIA SOLANACEARUM LECTIN INTERACTIONS. In EuroCarb 2011 abstracts. 2011.

BYSTRICKÝ, Peter; Karel KUBÍČEK; Marie POKORNÁ; Radovan FIALA a Michaela WIMMEROVÁ. NMR STUDY OF RALSTONIA SOLANACEARUM LECTIN INTERACTIONS. 2011. ISBN 978-80-86313-34-4.

HÓBOR, Fruzsina; Roberto PERGOLI; Karel KUBÍČEK; Dominika HROŠŠOVÁ; Veronika BAČÍKOVÁ; Michal ZIMMERMANN; Josef PASULKA; Ctirad HOFR; Štěpánka VAŇÁČOVÁ a Richard ŠTEFL. Recognition of transcription termination signal by the nuclear polyadenylated RNA-binding (Nab)3 protein. The Journal of Biological Chemistry. Am. Soc. for Biochem. and Mol. Biol., 2011, roč. 286, č. 5, s. 3645-3657. ISSN 0021-9258. Dostupné z: https://doi.org/10.1074/jbc.M110.158774.

ŠMIŘÁKOVÁ, Eliška; Paride PAPADIA; Fabio ARNESANO; Giovanni NATILE; Karel KUBÍČEK a Jiří KOZELKA. Using NMR spectroscopy for improvement of cisplatin-based drugs. In Instruments and methods for biology and medicine 2011. 2011. ISBN 978-80-01-04915-0.

KUBÍČEK, Karel; Josef PASULKA; Hana ČERNÁ; Frank LÖHR a Richard ŠTEFL. 1H, 13C, and 15N resonance assignments for the CTD-Interacting Domain of Nrd1 bound to Ser5-phosphorylated CTD of RNA Polymerase II. Biomolecular NMR Assignments. Netherlands: Springer Netherlands, 2011, roč. 5, č. 2, s. 203-205. ISSN 1874-2718. Dostupné z: https://doi.org/10.1007/s12104-011-9300-y.

KUBICEK, Karel; S. Kaspar GRIMM; Julien ORTS; Florenz SASSE a Teresa CARLOMAGNO. The Tubulin-Bound Structure of the Antimitotic Drug Tubulysin. Angewandte Chemie International Edition. Weinheim, Spolková republika Německo: Wiley-VCH Verlag GmbH & Co., 2010, roč. 49, č. 28, s. 4809-4812. ISSN 1433-7851.

KUBÍČEK, Karel; Jordan MONNET; Simone SCINTILLA; Jana KOPEČNÁ; Fabio ARNESANO; Lukáš TRANTÍREK; Claude CHOPARD; Giovanni NATILE a Jiří KOZELKA. Unusual Interstrand Pt(S,S-diaminocyclohexane)-GG Crosslink Formed by Rearrangement of a Classical Intrastrand Crosslink Within a DNA Duplex. Chemistry - An Asian Journal. WILEY-V C H VERLAG GMBH, 2010, roč. 5, č. 2, s. 244-247. ISSN 1861-4728.

PERGOLI, Roberto; Karel KUBÍČEK; Fruzsina HÓBOR; Josef PASULKA a Richard ŠTEFL. (1)H, (13)C, and (15)N chemical shift assignments for the RNA recognition motif of Nab3. Biomolecular NMR Assignments. UNITED STATES: SPRINGER, 2010, roč. 4, č. 1, s. 119-121. ISSN 1874-2718. Dostupné z: https://doi.org/10.1007/s12104-010-9221-1.

ČERNÁ, Hana; Karel KUBÍČEK a Richard ŠTEFL. Recognition of phosphorylated CTD of RNA Pol II by Nrd1. In Recognition of phosphorylated CTD of RNA Pol II by Nrd1. 2009. ISSN 1211-5894.

HÓBOR, Fruzsina; Karel KUBÍČEK; Josef PASULKA a Richard ŠTEFL. Structure and RNA binding of Nab3. In Structure and RNA binding of Nab3. 2009. ISSN 1211-5894.

HÓBOR, Fruzsina; Hana ČERNÁ; Veronika BAČÍKOVÁ; Josef PASULKA; Karel KUBÍČEK a Richard ŠTEFL. Transcription termination of nonpolyadenylated transcripts. In Transcription termination of nonpolyadenylated transcripts. 2009. ISSN 1211-5894.

REESE, Marcel; Victor M SANCHEZ-PEDREGAL; Karel KUBÍČEK; Jens MEILER; Marcel J BLOMMERS; Christian GRIESINGER a Teresa CARLOMAGNO. Structural basis of the activity of the microtubule-stabilizing agent epothilone a studied by NMR spectroscopy in solution. Angewandte Chemie International Edition. Weinheim: Wiley-VCH Verlag GmbH & Co., 2007, roč. 46, č. 11, s. 1864-1868. ISSN 1433-7851.

SANCHEZ-PEDREGAL, Victor M; Karel KUBÍČEK; Jens MEILER; Isabelle LYOTHIER; Ian PATERSON a Teresa CARLOMAGNO. The tubulin-bound conformation of discodermolide derived by NMR studies in solution supports a common pharmacophore model for epothilone and discodermolide. Angewandte Chemie International Edition. Weinheim: Wiley-VCH Verlag GmbH & Co., 2006, roč. 45, č. 44, s. 7388-7394. ISSN 1433-7851.

BANCI, Lucia; Ivano BERTINI; Simone CIOFI-BAFFONI; Efthalia KATSARI; Nikolaos KATSAROS; Karel KUBÍČEK a Stefano MANGANI. A copper(I) protein possibly involved in the assembly of CuA center of bacterial cytochrome c oxidase. Proceedings of the National Academy of Sciences of the USA. Washington, 2005, roč. 102, č. 11, s. 3994-3999. ISSN 0027-8424.

BANCI, Lucia; Ivano BERTINI; Isabella C FELLI; Ludwig KRIPPAHL; Karel KUBÍČEK; Jose J MOURA a Antonio ROSATO. A further investigation of the cytochrome b5-cytochrome c complex. Journal of Biological Inorganic Chemistry. Heidelberg: Springer Verlag, 2003, roč. 8, č. 7, s. 777-786. ISSN 0949-8257.