Výpis publikací

MITTEROVÁ, Kristína; Eva VÝTVAROVÁ; Anežka KOVÁŘOVÁ; Martin LAMOŠ; Jan FOUSEK a Irena REKTOROVÁ. Early functional changes in lewy body dementia: roles of dynamics, locus coeruleus, and compensation. Alzheimer's Research & Therapy. London: BioMed Central Ltd, 2025, roč. 17, č. 199, s. 1-14. ISSN 1758-9193. Dostupné z: https://doi.org/10.1186/s13195-025-01828-1.

BREYTON, Martin; Jan FOUSEK; Giovanni RABUFFO; Pierpaolo SORRENTINO; Lionel KUSCH; Marcello MASSIMINI; Spase PETKOSKI a Viktor JIRSA. Spatiotemporal brain complexity quantifies consciousness outside of perturbation paradigms. elife. CAMBRIDGE: ELIFE SCIENCES PUBLICATIONS LTD, 2025, roč. 13, oct, s. 1-18. ISSN 2050-084X. Dostupné z: https://doi.org/10.7554/eLife.98920.

LUPI, Eleonora; Di Antonio GABRIELE; Marianna ANGIOLELLI; Maria SACHA; Mehmet Alihan KAYABAS; Nicola ALBORE; Riccardo LEONE; El Kanbi KARIM; Alain DESTEXHE a Jan FOUSEK. A Whole-Brain Model of the Aging Brain During Slow Wave Sleep. ENEURO. UNITED STATES: SOC NEUROSCIENCE, 2024, roč. 11, č. 11, s. 1-12. ISSN 2373-2822. Dostupné z: https://doi.org/10.1523/ENEURO.0180-24.2024.

KAŠE, Vojtěch; Tomáš GLOMB a Jan FOUSEK. Networks and Religious Transformations. In Brughmans, Tom; Mills, Barbara J.; Munson, Jessica; Peeples, Matthew A. The Oxford Handbook of Archaeological Network Research. Oxford: Oxford University Press, 2024, s. 413-426. Oxford Handbooks. ISBN 978-0-19-885426-5. Dostupné z: https://doi.org/10.1093/oxfordhb/9780198854265.013.33.

FOUSEK, Jan; Giovanni RABUFFO; Kashyap GUDIBANDA; Hiba SHEHEITLI; Spase PETKOSKI a Viktor JIRSA. Symmetry breaking organizes the brain's resting state manifold. Nature Scientific Reports. BERLIN: NATURE PORTFOLIO, 2024, roč. 14, č. 1, s. 1-17. ISSN 2045-2322. Dostupné z: https://doi.org/10.1038/s41598-024-83542-w.

VÝTVAROVÁ, Eva; Jan FOUSEK; Martin LAMOŠ; Radek MAREČEK; Kristína MITTEROVÁ; Patrícia KLOBUŠIAKOVÁ; Ivan REKTOR a Irena REKTOROVÁ. Topological network analysis across brain diseases. In 17. Mezinárodní workshop funkční magnetické rezonance, Olomouc. 2024.

VÝTVAROVÁ, Eva; Jan FOUSEK a Jaroslav HLINKA. Evaluating the random matrix theory in brain functional communities. In Communities in Networks, NetSci 2023 affiliated satellite, Vienna, Austria. 2023.

CHALUPA, Aleš; Eva VÝTVAROVÁ; Jan FOUSEK; Adam MERTEL a Tomáš HAMPEJS. The network(s) of Mithraism : discussing the role of the Roman army in the spread of Mithraism and the question of interregional communication. Religio: revue pro religionistiku. Brno: Česká společnost pro religionistiku o.s., 2021, roč. 29, č. 2, s. 107-131. ISSN 1210-3640. Dostupné z: https://doi.org/10.5817/Rel2021-2-1.

OĽHA, Jaroslav; Jana HOZZOVÁ; Jan FOUSEK a Jiří FILIPOVIČ. Exploiting historical data: Pruning autotuning spaces and estimating the number of tuning steps. CONCURRENCY AND COMPUTATION-PRACTICE & EXPERIENCE. HOBOKEN: WILEY, 2020, roč. 32, č. 21, s. 1-15. ISSN 1532-0626. Dostupné z: https://doi.org/10.1002/cpe.5962.

KLOBUŠIAKOVÁ, Patrícia; Radek MAREČEK; Jan FOUSEK; Eva VÝTVAROVÁ a Irena REKTOROVÁ. Connectivity Between Brain Networks Dynamically Reflects Cognitive Status of Parkinson's Disease: A Longitudinal Study. Journal of Alzheimers Disease. Amsterdam: IOS Press, 2019, roč. 67, č. 3, s. 971-984. ISSN 1387-2877. Dostupné z: https://doi.org/10.3233/JAD-180834.

OĽHA, Jaroslav; Jana HOZZOVÁ; Jan FOUSEK a Jiří FILIPOVIČ. Exploiting historical data: pruning autotuning spaces and estimating the number of tuning steps. In Ulrich Schwardmann, Christian Boehme, Dora B. Heras, Valeria Cardellini, Emmanuel Jeannot, Antonio Salis, Claudio Schifanella, Ravi Reddy Manumachu, Dieter Schwamborn, Laura Ricci, Oh Sangyoon, Thomas Gruber, Laura Antonelli, Stephen L. Scott. Lecture Notes in Computer Science. Cham, Switzerland: Springer, Cham, 2019, s. 295-307. ISBN 978-3-030-48339-5. Dostupné z: https://doi.org/10.1007/978-3-030-48340-1_23.

FOUSEK, Jan. Efficient sparse matrix-delayed vector multiplication for discretized neural field model. The Journal of Supercomputing. Springer US, 2018, roč. 74, č. 5, s. 1863-1884. ISSN 0920-8542. Dostupné z: https://doi.org/10.1007/s11227-017-2194-4.

GAJDOŠ, Martin; Eva VÝTVAROVÁ; Jan FOUSEK; Martin LAMOŠ a Michal MIKL. Robustness of Representative Signals Relative to Data Loss Using Atlas-Based Parcellations. BRAIN TOPOGRAPHY. DORDRECHT: SPRINGER, 2018, roč. 31, č. 5, s. 767-779. ISSN 0896-0267. Dostupné z: https://doi.org/10.1007/s10548-018-0647-6.

FOUSEK, Jan; Vojtěch KAŠE; Adam MERTEL; Eva VÝTVAROVÁ a Aleš CHALUPA. Spatial constraints on the diffusion of religious innovations : The case of early Christianity in the Roman Empire. PLOS ONE. Public Library of Science, 2018, roč. 13, č. 12, s. 1-14. ISSN 1932-6203. Dostupné z: https://doi.org/10.1371/journal.pone.0208744.

PAPOUŠEK, Dalibor; Vojtěch KAŠE; Zdeněk POSPÍŠIL; Adam MERTEL; Jan FOUSEK a Eva VÝTVAROVÁ. Šíření křesťanství v antickém Středomoří. In Kognice a umělý život, Brno (30.5. - 1.6. 2018). 2018.

CHALUPA, Aleš; Tomáš GLOMB; Adam MERTEL; Eva VÝTVAROVÁ; Zdeněk STACHOŇ; Zdeněk POSPÍŠIL a Jan FOUSEK. Šíření „orientálních kultů“ po cestách starověkého Středomoří : Případové studie egyptských kultů a Mithraismu. In Kognice a umělý život 2018, Brno, 30.5.-1.6.2018. 2018.

CHALUPA, Aleš; Eva VÝTVAROVÁ; Jan FOUSEK a Adam MERTEL. Connection Between Mithraism and Roman Army Garrisons. In Historical Network Research Conference, 17.-18.10.2017, Turku, Finland. 2017.

VÝTVAROVÁ, Eva a Jan FOUSEK. Evaluation of community detection algorithms applied to time-series connectivity networks with dynamical structure. In CompleNet'17, Dubrovnik, Croatia. 2017.

VÝTVAROVÁ, Eva; Jan FOUSEK; Michal MIKL; Irena REKTOROVÁ a Eva HLADKÁ. Investigating Community Detection Algorithms and their Capacity as Markers of Brain Diseases. Online. In International Symposium on Grids and Clouds (ISGC) 2017. Academia Sinica, Taipei, Taiwan: Proceedings of Science. Taipei; Taiwan: Sissa Medialab Srl, 2017, s. 1-14. ISSN 1824-8039. Dostupné z: https://doi.org/10.22323/1.293.0018.

VÝTVAROVÁ, Eva; Jan FOUSEK; Michal MIKL a Irena REKTOROVÁ. Investigating Modularity and Its Capacity As a Marker of Neurodegenerative Diseases. In 64. Společný sjezd české a slovenské společnosti pro klinickou neurofyziologii, České Budějovice. 2017.

VÝTVAROVÁ, Eva; Radek MAREČEK; Jan FOUSEK; Ondřej STRÝČEK a Ivan REKTOR. Large-scale cortico-subcortical functional networks in focal epilepsies: The role of the basal ganglia. NeuroImage-Clinical. Oxford: Elsevier BV, 2017, roč. 2017, č. 14, s. 28-36. ISSN 2213-1582. Dostupné z: https://doi.org/10.1016/j.nicl.2016.12.014.

FOUSEK, Jan; Vojtěch KAŠE; Eva VÝTVAROVÁ a Adam MERTEL. Relating the Spread of Early Christianity to the Transportation Network of Ancient Mediterranean. In Historical Network Research Conference, Turku, Finland. 2017.

VÝTVAROVÁ, Eva; Jan FOUSEK; Marek BARTOŇ; Radek MAREČEK; Martin GAJDOŠ; Martin LAMOŠ; Marie NOVÁKOVÁ; Tomáš SLAVÍČEK; Igor PETERLÍK a Michal MIKL. The Impact of Diverse Preprocessing Pipelines on Brain Functional Connectivity. Online. In 25th European Signal Processing Conference (EUSIPCO), Kos, Greece. Kos, Greece: IEEE, 2017, s. 2644-2648. ISBN 978-0-9928626-7-1. Dostupné z: https://doi.org/10.23919/EUSIPCO.2017.8081690.

FOUSEK, Jan; Eva VÝTVAROVÁ; Adam MERTEL; Aleš CHALUPA a Eva HLADKÁ. Agent-Based Modelling And Simulation For The Geospatial Network Model Of The Roman World. Online. In International Symposium on Grids and Clouds (ISGC) 2016. Taipei, Taiwan: Proceedings of Science, 2016, s. 1-9. ISSN 1824-8039.

VÝTVAROVÁ, Eva; Radek MAREČEK; Jan FOUSEK a Ivan REKTOR. Combining network and partial least square analyses: epilepsy case study. In 12. Mezinárodní workshop funkční magnetické rezonance, Olomouc. 2016.

VÝTVAROVÁ, Eva; Jan FOUSEK a Michal MIKL. Dynamic connectivity. In Educational course NeuroImaging: Mapping the function and structure of brain, Brno. 2016.

VÝTVAROVÁ, Eva; Jan FOUSEK; Martin GAJDOŠ; Radek MAREČEK; Marek BARTOŇ; Martin LAMOŠ; Tomáš SLAVÍČEK a Michal MIKL. Effect of Different Preprocessing Options on Functional Connectivity Studied by Network Analysis. In 22nd Annual Meeting of the Organization for Human Brain Mapping (OHBM), Geneva, Switzerland. 2016.

MIKL, Michal; Eva VÝTVAROVÁ; Jan FOUSEK; Marek BARTOŇ; Martin GAJDOŠ; Martin LAMOŠ; Tomáš SLAVÍČEK a Radek MAREČEK. Effect of Preprocessing Pipeline on Functional Connectivity Analysis. In 22nd Annual Meeting of the Organization for Human Brain Mapping (OHBM), Geneva, Switzerland. 2016.

KAŠE, Vojtěch; Adam MERTEL; Eva VÝTVAROVÁ; Jan FOUSEK; Tomáš HAMPEJS a Aleš CHALUPA. Extending transportation network of the Roman Empire by means of demographic and economic proxies. In Second European Conference on Social Networks, Paris, France, 14.-17.6.2016. 2016.

GAJDOŠ, Martin; Michal MIKL; Eva VÝTVAROVÁ a Jan FOUSEK. Impact of ROI coverage on representative signals in atlas based parcellations. In 22nd Annual Meeting of the Organization for Human Brain Mapping (OHBM), Geneva, Switzerland. 2016.

VÝTVAROVÁ, Eva; Jan FOUSEK a Michal MIKL. Komunitní struktura a předzpracování v sítích funkční konektivity. In 63. Společný sjezd české a slovenské společnosti pro klinickou neurofyziologii, Praha. 2016.

VÝTVAROVÁ, Eva; Jan FOUSEK; Radek MAREČEK; Martin GAJDOŠ; Marek BARTOŇ; Martin LAMOŠ; Tomáš SLAVÍČEK a Michal MIKL. The effects of different preprocessing pipelines on network measures of functional connectivity. In Resting State and Brain Connectivity, Austria, Vienna. 2016.

VÝTVAROVÁ, Eva; Jan FOUSEK a Aleš CHALUPA. The MITHORIG project: Challenges and future prospects. In Network Theory and Computer Modeling in the Study of Religion, Budapest, Hungary. 2016.

VÝTVAROVÁ, Eva; Jan FOUSEK; Vojtěch KAŠE a Aleš CHALUPA. Trade Network of Ancient Mediterranean and Christianity. In NetSci-X Conference, Wrocław, Poland. 2016.

FOUSEK, Jan. Devectorization of Array Expressions for Selective Just in Time Specialization of Neural Ensamble Simulations. In Jan Kofroň and Tomáš Vojnar. MEMICS 2015 Tenth Doctoral Workshop on Mathematical and Engineering Methods in Computer Science. Tábor: LITERA, 2015. ISBN 978-80-214-5254-1.

BUJNOŠKOVÁ, Eva; Jan FOUSEK a Michal MIKL. Dynamics of functional brain networks: modularity and switching behavior. In Lipari School on Bioinformatics and Computational Biology, Computational Dynamic Analysis of Biological Processes, Italy. 2015.

VÝTVAROVÁ, Eva; Radek MAREČEK; Michal MIKL; Jan FOUSEK; Per SELNES; Erik HESSEN; Atle BJØRNERUD; Tormod FLADBY a Irena REKTOROVÁ. Functional connectivity alterations and their relation to pathophysiological changes in mild cognitive impairment. In 15th European Congress on Clinical Neuro­physiology, Brno, Czech Republic. 2015.

KAŠE, Vojtěch; Eva VÝTVAROVÁ a Jan FOUSEK. Christianization of the Roman Empire: Diffusion on a Settlement Network. In Bridging the Gaps: (Ancient) History from the Perspective of Mathematical and Computational Modelling and Network Analysis (GEHIR Workshop, Brno), 2015. 2015.

ŠIMOVÁ, Lucie; Josef HALÁMEK; Pavel JURÁK; Jan FOUSEK; Petr KLIMEŠ a Ivan REKTOR. Inter-areal frontal lobe communication during rest: A depth eeg connectivity study. 2015.

FOUSEK, Jan; Eva VÝTVAROVÁ a Eva HLADKÁ. Networked History. In Bridging the Gaps: (Ancient) History from the Perspective of Mathematical and Computational Modelling and Network Analysis. 2015.

FILIPOVIČ, Jiří; Matúš MADZIN; Jan FOUSEK a Luděk MATYSKA. Optimizing CUDA code by kernel fusion: application on BLAS. The Journal of Supercomputing. Springer US, 2015, roč. 71, č. 10, s. 3934-3957. ISSN 0920-8542. Dostupné z: https://doi.org/10.1007/s11227-015-1483-z.

FOUSEK, Jan. Využití velkoplošné vizualizace v neurovědách. In CESNET Community Forum: Multimédia. 2015.

BUJNOŠKOVÁ, Eva; Lenka KRAJČOVIČOVÁ; Jan FOUSEK a Irena REKTOROVÁ. Analýza sítí pacientů s Alzheimerovou nemocí pomocí teorie grafů: vliv výběru parcelačního atlasu. In Mezinárodní workshop funkční magnetické rezonance, Olomouc. 2014.

BUJNOŠKOVÁ, Eva a Jan FOUSEK. Graph theory in brain connectivity: still not clear methodology. In International School on Network Science, Balatonfüred, Hungary. 2014.

BUJNOŠKOVÁ, Eva; Jan FOUSEK; Radek MAREČEK a Ivan REKTOR. Importance of weak connections in functional network analysis of left TLE. In 61. Společný sjezd české a slovenské společnosti pro neurofyziologii, Olomouc. 2014.

BUJNOŠKOVÁ, Eva; Jan FOUSEK; Nela ELFMARKOVÁ; Martin GAJDOŠ; Martina MRAČKOVÁ a Irena REKTOROVÁ. Influence of levodopa on brain network: graph theory study based on expert knowledge and AAL atlas. In In 20th Annual Meeting of the Organization for Human Brain Mapping (OHBM), 2014. 2014.

GAJDOŠ, Martin; Michal MIKL; Martin HAVLÍČEK a Jan FOUSEK. Influence of underlying network structure on accuracy of DCM estimation. In 20th Annual Meeting of the Organization for Human Brain Mapping (OHBM), 2014. 2014.

FOUSEK, Jan. Parallel solvers for mean field models. In 3rd International Conference on Neural Field Theory (ICNFT). 2014.

FOUSEK, Jan. Recurrence analysis of SEEG recordings of cognitive responses. In 20th Annual Meeting of the Organization for Human Brain Mapping (OHBM), 2014. 2014.

LABOUNEK, René; Martin GAJDOŠ; Jan FOUSEK; Michal MIKL; Martin HAVLÍČEK; Milan BRÁZDIL a Jiří JAN. Sigmoid function parameter stability in anatomically informed priors for dynamic causal models. 2014.

FRAŇKOVÁ, Eva; Jan FOUSEK; Lukáš KALA a Jan LABOHÝ. Transaction network analysis for studying Local Exchange Trading Systems (LETS): Research potentials and limitations. Ecological Economics. 2014, roč. 107, November 2014, s. 266-275. ISSN 0921-8009. Dostupné z: https://doi.org/10.1016/j.ecolecon.2014.09.009.

BUJNOŠKOVÁ, Eva; Jan FOUSEK; Eva HLADKÁ a Michal MIKL. Comparison of the Methods for Brain Parcellation. In 60. společný sjezd české a slovenské společnosti pro klinickou neurofyziologii, Pardubice. 2013.

KALA, Lukáš; Eva FRAŇKOVÁ; Jan LABOHÝ a Jan FOUSEK. LET’S START NEW A LETS: LEARNING FROM A CASE-STUDY INVESTIGATION IN BRNO, CZECH REPUBLIC. Envigogika. Praha: Univerzita Karlova, 2013, roč. 8, č. 4, s. 1-10. ISSN 1802-3061.

FOUSEK, Jan. Processing and visualization of high resolution EEG data. In 60. společný sjezd české a slovenské společnosti klinické neurofyziologie. 2013.

FOUSEK, Jan; Petr KLIMEŠ; Pavel JURÁK a Milan BRÁZDIL. Searching for effective connectivity underlying the evoked response in SEEG. In 19th Annual Meeting of the Organization for Human Brain Mapping (OHBM). 2013.

FOUSEK, Jan. Teorie grafů ve funkčním zobrazování – obecné principy, teorie. In Vzdělávací fMRI workshop se zaměřením na konektivitu. 2013.

FILIPOVIČ, Jiří; Jan FOUSEK; Bedřich LAKOMÝ a Matúš MADZIN. Automatically Optimized GPU Acceleration of Element Subroutines in Finite Element Method. Online. In Symposium on Application Accelerators in High Performance Computing. LOS ALAMITOS, CA, USA: IEEE, 2012, s. 141-144. ISBN 978-1-4673-2882-1.

FOUSEK, Jan; Radovan JIŘÍK; Nicole RUITER a Jiří JAN. Fast 3D simulation for ultrasound transmission tomography. In 19th International Conference on Systems, Signals and Image Processing (IWSSIP), 2012. 2012, s. 584-587. ISSN 2157-8672.

JIŘÍK, Radovan; Igor PETERLÍK; Nicole RUITER; Jan FOUSEK; Robin DAPP; Michael ZAPF a Jiří JAN. Sound-speed image reconstruction in sparse-aperture 3-D ultrasound transmission tomography. IEEE Transactions on Ultrasonics, Ferroelectrics and Frequency Control. 2012, roč. 59, č. 2, s. 254 -264. Dostupné z: https://doi.org/10.1109/TUFFC.2012.2185.

FOUSEK, Jan; Jiří FILIPOVIČ a Matúš MADZIN. Automatic Fusions of CUDA-GPU Kernels for Parallel Map. Computer architecture news. New York: ACM Press., 2011, roč. 39, č. 4, s. 98-99. ISSN 0163-5964.

FOUSEK, Jan; Jiří FILIPOVIČ a Matúš MADZIN. Automatic Fusions of CUDA-GPU Kernels for Parallel Map. In Hideharu Amano and Wayne Luk. Second International workshop on highly-efficient accelerators and reconfigurable technologies (HEART). London (UK), 2011, s. 42-47.

FOUSEK, Jan; Tomáš GOLEMBIOVSKÝ; Jiří FILIPOVIČ a Igor PETERLÍK. Haptic Rendering Based on RBF Approximation from Dynamically Updated Data. In Luděk Matyska and Michal Kozubek and Tomáš Vojnar and Pavel Zemčík and David Antoš. Sixth Doctoral Workshop on Mathematical and Engineering Methods in Computer Science (MEMICS'10) -- Selected Papers. 16. vyd. Leibniz: Schloss Dagstuhl--Leibniz-Zentrum fuer Informatik, 2011, s. 26-31. ISBN 978-3-939897-22-4.

FOUSEK, Jan; Radovan JIŘÍK a Jan JIŘÍ. USCT-sim: 3D Simulator for Ultrasound Transmission Tomography. 2011.

FOUSEK, Jan; Tomáš GOLEMBIOVSKÝ; Jiří FILIPOVIČ a Igor PETERLÍK. Haptic Rendering Based on RBF Approximation from Dynamically Updated Data. In MEMICS 2010: Sixth Doctoral Workshop on Mathematical and Engineering Methods in Computer Science. Brno (Czech Republic): NOVPRESS, 2010, s. 53-59. ISBN 978-80-87342-10-7.

FILIPOVIČ, Jiří a Jan FOUSEK. Medium-grained functions mapping using modern GPUs. In Symposium on Application Accelerators in High Performance Computing 2010. 2010.

JIRIK, Radovan; Igor PETERLÍK; Jan FOUSEK; Jiri KRATOCHVILA; Jiří JAN; Michael ZAPF a Nicole RUITER. Synthetic Aperture Focusing in 3D Ultrasound Transmission Tomography. In Proceedings of Biosignal 2010: Analysis of Biomedical Signals and Images. Brno, Czech Republic: 978-80-214-4106-4, 2010, 408 s. ISBN 978-80-214-4106-4.

FILIPOVIČ, Jiří; Igor PETERLÍK a Jan FOUSEK. GPU Acceleration of Equations Assembly in Finite Elements Method -- Preliminary Results. In Symposium on Application Accelerators in High Performance Computing 2009. 2009.

ANTOŠ, David; Jiří DENEMARK a Jan FOUSEK. Effects of Virtualisation on Behaviour and Performance Characteristics of Network Processing. 2008.