Výpis publikací

TROJÁK, Matej; David ŠAFRÁNEK; Luboš BRIM; Jakub ŠALAGOVIČ a Jan ČERVENÝ. Executable Biochemical Space for Specification and Analysis of Biochemical Systems. Online. In Ankit Gupta, Tatjana Petrov. 9th International Workshop on Static Analysis and Systems Biology (SASB). ENTCS 350. Amsterdam: Elsevier, 2020, s. 91-116. ISSN 1571-0661. Dostupné z: https://doi.org/10.1016/j.entcs.2020.06.006.

KEATING, Sarah M; Dagmar WALTEMATH; Matthias KÖNIG; Fengkai ZHANG; Andreas DRÄGER; Claudine CHAOUIYA; Frank T BERGMANN; Andrew FINNEY; Colin S GILLESPIE; Tomáš HELIKAR; Stefan HOOPS; Rahuman S Malik SHERIFF; Stuart L MOODIE; Ion I MORARU; Chris J MYERS; Aurélien NALDI; Brett G OLIVIER; Sven SAHLE; James C SCHAFF; Lucian P SMITH; Maciej J SWAT; Denis THIEFFRY; Leandro WATANABE; Darren J WILKINSON; Michael L BLINOV; Kimberly BEGLEY; James R FAEDER; Harold F GÓMEZ; Thomas M HAMM; Yuichiro INAGAKI; Wolfram LIEBERMEISTER; Allyson L LISTER; Daniel LUCIO; Eric MJOLSNESS; Carole J PROCTOR; Karthik RAMAN; Nicolas RODRIGUEZ; CLIFFORD; SHAFFER; Bruce E SHAPIRO; Joerg STELLING; Neil SWAINSTON; Naoki TANIMURA; John WAGNER; Martin Meier SCHELLERSHEIM; Herbert M SAURO; Bernhard PALSSON; Hamid BOLOURI; Hiroaki KITANO; Akira FUNAHASHI; Henning HERMJAKOB; John C DOYLE; Michael HUCKA; SBML Level Community MEMBERS; Richard R ADAMS; NICHOLAS; ALLEN; Bastian R ANGERMANN; Marco ANTONIOTTI; Gary D BADER; Jan ČERVENÝ; Mélanie COURTOT; Chris D COX; Piero Dalle PEZZE; Emek DEMIR; William S DENNEY; Harish DHARURI; Julien DORIER; Dirk DRASDO; Ali EBRAHIM; Johannes EICHNER; Johan ELF; Lukas ENDLER; Chris T EVELO; Christoph FLAMM; Ronan MT FLEMING; Martina FRÖHLICH; Mihai GLONT; Emanuel GONÇALVES; Martin GOLEBIEWSKI; Hovakim GRABSKI; Alex GUTTERIDGE; Damon HACHMEISTER; LEONARD; HARRIS; Benjamin D HEAVNER; Ron HENKEL; William S HLAVACEK; Bin HU; Daniel R HYDUKE; Hidde de JONG; Nick JUTY; Peter D KARP; Jonathan R KARR; Douglas B KELL; Roland KELLER; Ilya KISELEV; Steffen KLAMT; Edda KLIPP; Christian KNÜPFER; Fedor KOLPAKOV; Falko KRAUSE; Martina KUTMON; Camille LAIBE; Conor LAWLESS; Lu LI; Leslie M LOEW; Rainer MACHNE; Yukiko MATSUOKA; Pedro MENDES; Huaiyu MI; Florian MITTAG; Pedro T MONTEIRO; Kedar Nath NATARAJAN; Poul MF NIELSEN; Tramy NGUYEN; Alida PALMISANO; Jean Baptiste PETTIT; Thomas PFAU; Robert D PHAIR; Tomas RADIVOYEVITCH; Johann M ROHWER; OLIVER; RUEBENACKER; Julio Saez RODRIGUEZ; Martin SCHARM; Henning SCHMIDT; Falk SCHREIBER; Michael SCHUBERT; Roman SCHULTE; Stuart C SEALFON; Kieran SMALLBONE; Sylvain SOLIMAN; Melanie I STEFAN; Devin P SULLIVAN; Koichi TAKAHASHI; Bas TEUSINK; David TOLNAY; Ibrahim VAZIRABAD; Axel von KAMP; Ulrike WITTIG; Clemens WRZODEK; Finja WRZODEK; Ioannis XENARIOS; Anna ZHUKOVA a Jeremy ZUCKER. SBML Level 3: an extensible format for the exchange and reuse of biological modelsAutoři. Online. Molecular systems biology. EMBOpress, 2020, roč. 16, č. 8, s. e9110. Dostupné z: https://doi.org/10.15252/msb.20199110.

DRÁPELA, Stanislav; PrashantKumar KHIRSARIYA; Wytske M VAN WEERDEN; Radek FEDR; Tereza SUCHÁNKOVÁ; Diana BÍZOVA; Jan ČERVENÝ; Aleš HAMPL; Martin PUHR; William R WATSON; Zoran CULIG; Lumír KREJČÍ; Kamil PARUCH a Karel SOUČEK. The CHK1 inhibitor MU380 significantly increases the sensitivity of human docetaxel-resistant prostate cancer cells to gemcitabine through the induction of mitotic catastrophe. Molecular oncology. Hoboken: Wiley, 2020, roč. 14, č. 10, s. 2487-2503. ISSN 1574-7891. Dostupné z: https://doi.org/10.1002/1878-0261.12756.

TROJÁK, Matej; David ŠAFRÁNEK; Jan ČERVENÝ; Marek HAVLÍK; Lukrécia MERTOVÁ; Matej HAJNAL; Jakub HRABEC a Jakub ŠALAGOVIČ. Comprehensive Modelling Platform. In 6th Workshop on Hybrid Systems & Biology. 2019.

SEGEČOVÁ, Anna; Jan ČERVENÝ a Thomas ROITSCH. Advancement of the cultivation and upscaling of photoautotrophic suspension cultures using Chenopodium rubrum as a case study. Plant Cell, Tissue and Organ Culture. Dordrecht: Springer, 2018, roč. 135, č. 1, s. 37-51. ISSN 0167-6857. Dostupné z: https://doi.org/10.1007/s11240-018-1441-6.

TROJÁK, Matej; David ŠAFRÁNEK; Jakub HRABEC; Jakub ŠALAGOVIČ; Jan ČERVENÝ; Matej HAJNAL; Lukrécia MERTOVÁ; Katarína PALUBOVÁ a Marek HAVLÍK. E-cyanobacterium.org: A Web-based Platform for Systems Biology of Cyanobacteria. In 16th International Conference on Computational Methods in Systems Biology. 2018.

BENEŠ, Nikola; Luboš BRIM; Jan ČERVENÝ; Samuel PASTVA; David ŠAFRÁNEK; Jakub ŠALAGOVIČ a Matej TROJÁK. Fully Automated Attractor Analysis of Cyanobacteria Models. In Marian Barbu, Răzvan Şolea, Adrian Filipescu. 22nd International Conference on System Theory, Control and Computing. Neuveden: IEEE, 2018, s. 354-359. ISBN 978-1-5386-4444-7. Dostupné z: https://doi.org/10.1109/ICSTCC.2018.8540762.

ČERVENÝ, Jan; Jakub ŠALAGOVIČ; František MUZIKA; David ŠAFRÁNEK a Igor SCHREIBER. Influence of circadian clocks on optimal regime of central C-N metabolism of cyanobacteria. Online. In Mishra, A. K.; Tiwari, D.; Rai, A. N. Cyanobacteria: From Basic Science to Applications. 1st ed. Neuveden: Academic Press, 2018, s. 193-206. ISBN 978-0-12-814667-5. Dostupné z: https://doi.org/10.1016/B978-0-12-814667-5.00009-X.

SEGEČOVÁ, Anna; Jan ČERVENÝ a Thomas ROITSCH. Photoautotrophic cell cultures – a model system for photosynthesis research on cellular level. In Panzarová, K. IPAP 2018 International Plant and Algal Phenomics Meeting - Program, Book of Abstracts, List of Participants. 2018, s. 1-9.

SEGEČOVÁ, Anna; Jan ČERVENÝ a Thomas ROITSCH. Photoautotrophic cell cultures – a model system for photosynthesis research on cellular level. In Messinger, J.; Styring, S. First European Congress on Photosynthesis Research, ePS-1. 2018, s. 99-100.

SUKAČOVÁ, Kateřina a Jan ČERVENÝ. Can algal biotechnology bring effective solution for closing the phosphorus cycle? Use of algae for nutrient removal – review of past trends and future perspectives in the context of nutrient recovery. European journal of environmental sciences. Prague: Karolinum Press, 2017, roč. 7, č. 1, s. 63-72. ISSN 1805-0174.

TROJÁK, Matej; David ŠAFRÁNEK; Jakub HRABEC; Jakub ŠALAGOVIČ; Františka ROMANOVSKÁ; Matej HAJNAL a Jan ČERVENÝ. E-cyanobacterium.org: A Web-based Platform for Systems Biology of Cyanobacteria. In International Conference on Systems Biology 2017. 2017.

TROJÁK, Matej; David ŠAFRÁNEK; Jakub HRABEC; Jakub ŠALAGOVIČ; Františka ROMANOVSKÁ; Matej HAJNAL a Jan ČERVENÝ. E-cyanobacterium.org: A Web-based Platform for Systems Biology of Cyanobacteria. In The Biomania Student Scientific Meeting 2017. 2017.

TROJÁK, Matej; David ŠAFRÁNEK; Jakub HRABEC; Jakub ŠALAGOVIČ; Františka ROMANOVSKÁ; Matej HAJNAL a Jan ČERVENÝ. E-cyanobacterium.org: A Web-based Platform for Systems Biology of Cyanobacteria. In Doctoral Workshop on Mathematical and Engineering Methods in Computer Science. 2017.

ZAVŘEL, Tomáš; Petra OČENÁŠOVÁ a Jan ČERVENÝ. Phenotypic characterization of Synechocystis sp PCC 6803 substrains reveals differences in sensitivity to abiotic stress. Plos one. San Francisco: Public Library of Science, 2017, roč. 12, č. 12, 21 s. ISSN 1932-6203. Dostupné z: https://doi.org/10.1371/journal.pone.0189130.

SEGEČOVÁ, Anna; Jan ČERVENÝ a Thomas ROITSCH. Stress Response Monitoring of Photoautotrophic Higher Plant Suspension Cultures by Fluorescence Imaging for High-Throughput Toxic Compound Screening. JOURNAL OF ENVIRONMENTAL PROTECTION. Scientific Research Publishing, 2017, roč. 8, č. 6, s. 678-692. ISSN 2152-2219. Dostupné z: https://doi.org/10.4236/jep.2017.86044.

ZAVŘEL, Tomáš; Hening KNOOP; Ralf STEUER; Jones PATRIK; Jan ČERVENÝ a Martin TRTÍLEK. A quantitative evaluation of ethylene production in the recombinant cyanobacterium Synechocystis sp. PCC 6803 harboring the ethylene-forming enzyme by membrane inlet mass spectrometry. Bioresource Technology. 2016, roč. 202, s. 142–151.

VLACHYNSKÁ, Alžběta; Jan ČERVENÝ; V. ČMIEL a T. TUREČEK. Automatic Image-Based Method for Quantitative Analysis of Photosynthetic Cell Cultures. Berlin, Heidelberg: Springer Berlin Heidelberg, 2016, roč. 7209, s. 402–413. ISSN 0302-9743. Dostupné z: https://doi.org/10.1007/978-3-319-32034-2_34.

TROJÁK, Matej; Tadeáš DĚD; David ŠAFRÁNEK; Matej KLEMENT; Jan ČERVENÝ a Františka ROMANOVSKÁ. Biochemical Space: A Language for Formal Description and Annotation of Complex Biological Processes. In MEMICS 2016. 2016.

TROJÁK, Matej; David ŠAFRÁNEK; Jakub HRABEC; Jakub ŠALAGOVIČ; Jan ČERVENÝ a Matej HAJNAL. E-cyanobacterium.org: A Web-based Platform for Systems Biology of Cyanobacteria. 2016.

TROJÁK, Matej; David ŠAFRÁNEK; Jakub HRABEC; Jakub ŠALAGOVIČ; Františka ROMANOVSKÁ a Jan ČERVENÝ. E-Cyanobacterium.org: A Web-Based Platform for Systems Biology of Cyanobacteria. In Ezio Bartocci et al. Computational Methods in Systems Biology. CMSB 2016. Heidelberg: Springer, 2016, s. 316-322. ISBN 978-3-319-45176-3. Dostupné z: https://doi.org/10.1007/978-3-319-45177-0_20.

ČERVENÝ, Jan; Tomáš ZAVŘEL; Dominik CHMELÍK; Diana BÚZOVÁ; Jan FEDORKO; Petra LITERÁKOVÁ; Kateřina SUKAČOVÁ; Anna SEGEČOVÁ a Thomas ROITSCH. Microalgal adaptive biotechnologies for a sustainable future. In Global Change & Ecosystems: Climate Change Adaptation Pathways from Molecules to Society. 2016. ISBN 978-80-87902-17-2.

ZAVŘEL, Tomáš; Jan ČERVENÝ; Henning KNOOP a Ralf STEUER. Optimizing cyanobacterial product synthesis: Meeting the challenges. BIOENGINEERED. PHILADELPHIA: TAYLOR & FRANCIS INC, 2016, roč. 7, č. 6, s. 490-496. ISSN 2165-5979. Dostupné z: https://doi.org/10.1080/21655979.2016.1207017.

TROJÁK, Matej; Tadeáš DĚD; David ŠAFRÁNEK; Matej KLEMENT; Jan ČERVENÝ a Luboš BRIM. Biochemical Space: A Language for Formal Description and Annotation of Complex Biological Processes. In 13th Conference on Computational Methods in Systems Biology. 2015.

TROJÁK, Matej; David ŠAFRÁNEK; Matej KLEMENT; Tadeáš DĚD; Jan ČERVENÝ a Luboš BRIM. Biochemical Space: A Language for Formal Description and Annotation of Complex Biological Processes. In Doctoral Workshop on Mathematical and Engineering Methods in Computer Science. 2015.

BAIAZITOVA, Larisa; Jiří CHMELÍK; Vratislav ČMIEL; Jan ČERVENÝ a Ivo PROVAZNÍK. Cell nuclei localization and 3D reconstruction of plant cell cultures from confocal images. In Book of Abstracts CEITEC PhD Retreat. 2015. ISBN 978-80-210-7825-3.

SEGEČOVÁ, Anna; Jan ČERVENÝ a Thomas ROITSCH. Cultivation of photoautotrophic plant suspension cultures in photobioreactors. In Urban, O. Conference "Global Change: a Complex Challenge" : 4th annual conference. 2015, s. 82-82. ISBN 978-80-87902-09-7.

SEGEČOVÁ, Anna; Jan ČERVENÝ a Thomas ROITSCH. Cultivation of photoautotrophic plant suspension cultures in photobioreactors. In Plant Biotech Denmark Annual meeting 2015. 2015.

SEGEČOVÁ, Anna; Jan ČERVENÝ a Thomas ROITSCH. Cultivation of photoautotrophic plant suspension cultures in photobioreactors. In Conference "Global Change: a Complex Challenge" : 4th annual conference. 2015. ISBN 978-80-87902-09-7.

ČERVENÝ, Jan; Stefan MUELLER a David ŠAFRÁNEK. CyanoNetwork workshop - Cyanobacterium in silico 2015. 2015.

KLEMENT, Matej; David ŠAFRÁNEK; Jan ČERVENÝ; Tadeáš DĚD; Matej TROJÁK; Luboš BRIM a Stefan MUELLER. E-cyanobacterium.org: A Web-based Platform for Systems Biology of Cyanobacteria. In Fourth International Workshop on Hybrid Systems Biology. 2015.

ZAVŘEL, Tomáš; Petra OČENÁŠOVÁ; Maria SINETOVÁ; Diana BÚZOVÁ a Jan ČERVENÝ. Experimental platform for microalgae characterization and optimization. In International Plant and Algal Phenomics Meeting 2015. 2015.

ZAVŘEL, Tomáš; Maria, A. SINETOVÁ; Diana BÚZOVÁ; Petra LITERÁKOVÁ a Jan ČERVENÝ. Characterization of a model cyanobacterium Synechocystis sp. PCC 6803 autotrophic growth in a flat-panel photobioreactor. ENGINEERING IN LIFE SCIENCES. WILEY-BLACKWELL, 2015, roč. 15, č. 1, s. 122-132. ISSN 1618-0240. Dostupné z: https://doi.org/10.1002/elsc.201300165.

ZAVŘEL, Tomáš; Petra OČENÁŠOVÁ; Maria SINETOVA a Jan ČERVENÝ. Characterization of autotrophic growth of a model cyanobacterium Synechocystis sp. PCC 6803 in a flat panel photobioreactor. In Global Change: A Complex Challenge. 2015.

ZAVŘEL, Tomáš; Petra OČENÁŠOVÁ; Maria SINETOVÁ; Diana BÚZOVÁ; Petra LITERÁKOVÁ a Jan ČERVENÝ. Characterization of microalgae growth using flat panel photobioreactor. In 7th Symposia on Microalgae and seaweed products in plant/soil-systems. 2015.

ZAVŘEL, Tomáš; Maria SINETOVA a Jan ČERVENÝ. Measurement of Chlorophyll a and Carotenoids Concentration in Cyanobacteria. Bio-protocol. 2015, roč. 5, č. 9, 5 s. ISSN 2331-8325.

ČERVENÝ, Jan; Maria, A. SINETOVA; Tomáš ZAVŘEL a Dmitry, A, LOS. Mechanisms of High Temperature Resistance of Synechocystis sp. PCC 6803: An Impact of Histidine Kinase 34. Life. Basel, Switzerland: MDPI AG, 2015, č. 5, s. 676-679. ISSN 2075-1729. Dostupné z: https://doi.org/10.3390/life5010676.

CHMELÍK, Dominik; Jan ČERVENÝ; Karel SOUČEK; Aleš HAMPL a Martin TRTÍLEK. Optimalization of cultivation conditions for production of farmaceutic compounds by nitrogen-fixing cyanobacteria. 2015.

KLEMENT, Matej; Tadeáš DĚD; David ŠAFRÁNEK; Jan ČERVENÝ; Stefan MUELLER a Ralf STEUER. Biochemical Space: A Framework for Systemic Annotation of Biological Models. Online. In Proceedings of the 5th International Workshop on Interactions between Computer Science and Biology (CS2Bio’14). Amsterdam: Elsevier, 2014, s. 31-44. ISSN 1571-0661. Dostupné z: https://doi.org/10.1016/j.entcs.2014.06.013.

KLEMENT, Matej; David ŠAFRÁNEK; Jan ČERVENÝ; Tadeáš DĚD; Stefan MUELLER a Ralf STEUER. E-cyanobacterium.org: A Web-based Platform for Systems Biology of Cyanobacteria. 2014.

BÚZOVÁ, Diana; Eva NEVRTALOVÁ; Tomáš ZAVŘEL; Jan FEDORKO; Anna SEGEČOVÁ a Jan ČERVENÝ. Characterization of evolutionary changes to study and engineering of green microalgae. In Oparin-2014 International conference THE PROBLEM OF ORIGIN OF LIFE Youth scientific school MOLLECULAR BASIS OF THE EARLY EVOLUTION OF LIFE. 2014.

KLEMENT, Matej; David ŠAFRÁNEK; Tadeáš DĚD; Aleš PEJZNOCH; Ladislav NEDBAL; Ralf STEUER; Jan ČERVENÝ a Stefan MUELLER. A Comprehensive Web-based Platform For Domain-Specific Biological Models. Online. In Proceedings of the fourth International Workshop on Interactions between Computer Science and Biology (CS2Bio'13). Neuveden: Elsevier, 2013, s. 61-67. ISSN 1571-0661. Dostupné z: https://doi.org/10.1016/j.entcs.2013.11.006.

ČERVENÝ, Jan; Maria A SINETOVA; Luis VALLEDOR; Louis A SHERMAN a Ladislav NEDBAL. Ultradian metabolic rhythm in the diazotrophic cyanobacterium Cyanothece sp ATCC 51142. Proceedings of the National Academy of Sciences of the United States of America. 2013, roč. 110, č. 32, s. 13210-13215. ISSN 0027-8424. Dostupné z: https://doi.org/10.1073/pnas.1301171110.

SINETOVA, M; Jan ČERVENÝ; Tomáš ZAVŘEL a Ladislav NEDBAL. On the dynamics and constraints of batch culture growth of the cyanobacterium Cyanothece sp. ATCC 51142. Journal of Biotechnology. 2012. Dostupné z: https://doi.org/10.1016/j.jbiotec.2012.04.009.

SINETOVA, MA; Jan ČERVENÝ; Tomáš ZAVŘEL a Ladislav NEDBAL. On the dynamics and constraints of batch culture growth of the cyanobacterium Cyanothece sp ATCC 51142. Journal of Biotechnology. Amsterdam: Elsevier, 2012, roč. 162, č. 1, s. 148-155. ISSN 0168-1656. Dostupné z: https://doi.org/10.1016/j.jbiotec.2012.04.009.

ZAVŘEL, Tomáš; Jan ČERVENÝ; Maria SINETOVA; Zaneta POCHYLOVA a Ladislav NEDBAL. On the dynamics and constraints of batch culture growth of two cyanobacterial unicellular strains: Cyanothece sp. ATCC 51142 and Synechocystis sp. PCC 6803. In Young Algaeneers Symposium, Book of Abstract. 2012.

FISER, J; P ZITEK a Jan ČERVENÝ. RELAY FEEDBACK OSCILLATOR DESIGN FOR MODELING CIRCADIAN RHYTHMS IN CYANOBACTERIA. NEW YORK: AMER SOC MECHANICAL ENGINEERS, 2012, s. 549-556.

POCHYLOVA, Zaneta; Tomáš ZAVŘEL; Jan ČERVENÝ; Maria SINETOVA a Ladislav NEDBAL. Unicellular cyanobacterium Synechocystis sp. PCC 6803 and its recombinant strain with ethylene forming gene: growth optimization and ethylene production. 2012.

ŠAFRÁNEK, David; Jan ČERVENÝ; Matej KLEMENT; Jana POSPÍŠILOVÁ; Luboš BRIM; Dušan LAZÁR a Ladislav NEDBAL. E-photosynthesis: Web-based platform for modeling of complex photosynthetic processes. BioSystems. Elsevier, 2011, roč. 103, č. 2, s. 115-124. ISSN 0303-2647. Dostupné z: https://doi.org/10.1016/j.biosystems.2010.10.013.

NEDBAL, Ladislav; Jan ČERVENÝ; Tomáš ZAVŘEL a Maria SINETOVA. Model and validation of mass transfer and cyanobacterial growth in a flat-panel photobioreactor. In ESF-BU-CeBiTec Conference Microorganisms for Bio-fuel Production from Sunlight, Bielefeld, Germany. 2011.

NEDBAL, Ladislav; Jan ČERVENÝ; N KEREN a A KAPLAN. Experimental validation of a nonequilibrium model of CO2 fluxes between gas, liquid medium, and algae in a flat-panel photobioreactor. JOURNAL OF INDUSTRIAL MICROBIOLOGY & BIOTECHNOLOGY. HEIDELBERG: SPRINGER HEIDELBERG, 2010, roč. 37, č. 12, s. 1319-1326. ISSN 1367-5435. Dostupné z: https://doi.org/10.1007/s10295-010-0876-5.

ČERVENÝ, Jan a Ladislav NEDBAL. Metabolic Rhythms of the Cyanobacterium Cyanothece sp ATCC 51142 Correlate with Modeled Dynamics of Circadian Clock. JOURNAL OF BIOLOGICAL RHYTHMS. THOUSAND OAKS: SAGE PUBLICATIONS INC, 2009, roč. 24, č. 4, s. 295-303. ISSN 0748-7304. Dostupné z: https://doi.org/10.1177/0748730409338367.

ČERVENÝ, Jan; I SETLIK; Milan TRTÍLEK a Ladislav NEDBAL. Photobioreactor for cultivation and real-time, in-situ measurement of O-2 and CO2 exchange rates, growth dynamics, and of chlorophyll fluorescence emission of photoautotrophic microorganisms. ENGINEERING IN LIFE SCIENCES. MALDEN: WILEY-BLACKWELL, 2009, roč. 9, č. 3, s. 247-253. ISSN 1618-0240. Dostupné z: https://doi.org/10.1002/elsc.200800123.

NEDBAL, Ladislav; Jan ČERVENÝ a H SCHMIDT. Scaling and integration of kinetic models of photosynthesis: Towards comprehensive e-photosynthesis. In Photosynthesis in silico. Springer, 2009.

NEDBAL, Ladislav; Milan TRTÍLEK; Jan ČERVENÝ; O KOMAREK a HB PAKRASI. A photobioreactor system for precision cultivation of photoautotrophic microorganisms and for high-content analysis of suspension dynamics. HOBOKEN: JOHN WILEY & SONS INC, 2008. Dostupné z: https://doi.org/10.1002/bit.21833.

FIŠER, J; P ZÍTEK a Jan ČERVENÝ. Oscillators for Modeling Biomass Growth Adaptation to Circadian Rhythms. In Computer Modeling and Simulation. 2008.

NEDBAL, Ladislav; Jan ČERVENÝ; U RASCHER a H SCHMIDT. E-photosynthesis: a comprehensive modeling approach to understand chlorophyll fluorescence transients and other complex dynamic features of photosynthesis in fluctuating light. PHOTOSYNTHESIS RESEARCH. DORDRECHT: SPRINGER, 2007, roč. 93, 1-3, s. 223-234. ISSN 0166-8595. Dostupné z: https://doi.org/10.1007/s11120-007-9178-9.

NEDBAL, Ladislav; V BREZINA; Jan ČERVENÝ a Milan TRTÍLEK. Photosynthesis in dynamic light: systems biology of unconventional chlorophyll fluorescence transients in Synechocystis sp PCC 6803. PHOTOSYNTHESIS RESEARCH. DORDRECHT: SPRINGER, 2005, roč. 84, 1-3, s. 99-106. ISSN 0166-8595. Dostupné z: https://doi.org/10.1007/s11120-004-6428-y.