Masarykova univerzita

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Filtrování publikací

    2023

    1. HOLZINGER, Andreas, Katharina KEIBLINGER, Petr HOLUB, Kurt ZATLOUKAL a Heimo MÜLLER. AI for Life: Trends in Artificial Intelligence for Biotechnology. NEW BIOTECHNOLOGY. NETHERLANDS: ELSEVIER, 2023, roč. 74, č. 1, s. 16-24. ISSN 1871-6784. doi:10.1016/j.nbt.2023.02.001.
    2. DAVID, Romain, Arina RYBINA, Jean-Marie BUREL, Jean-Karim HERICHE, Pauline AUDERGON, Jan-Willem BOITEN, Frederik COPPENS, Sara CROCKETT, Exter KATRINA, Sven FAHRENER, Maddalena FRATELLI, Carole GOBLE, Philipp GORMANNS, Tobias GRANTNER, Bjorn GRUNING, Kim Tamara GURWITZ, John HANCOCK, Henriette HARMSE, Petr HOLUB, Nick JUTY, Geoffrey KARNBACH, Emma KAROUNE, Antje KEPPLER, Jessica KLEMEIER, Carla LANCELOTTI, Jean-Luc LEGRAS, L Allyson LISTER, Livio Longo DARIO, Rebecca LUDWIG, Benedicte MADON, Marzia MASSIMI, Vera MATSER, Rafaele MATTEONI, Michaela Th MAYRHOFER, Ohmann CHRISTIAN, Maria PANAGIOTOPOULOU, Helen PARKINSON, Isabelle PERSEIL, Claudia PFANDER, Roland PIERUSCHKA, Michael RAESS, Andreas RAUBER, Audrey S RICHARD, Paolo ROMANO, Antonio ROSATO, Alex SANCHEZ-PLA, Susanna-Assunta SANSONE, Ugis SARKANS, Beatriz SERRANO-SOLANO, Jing TANG, Ziaurrehman TANOLI, Jonathan TEDDS, Harald WAGENER, Martin WEISE, Hans V WESTERHOFF, Rudolf WITTNER, Jonathan EWBANK, Niklas BLOMBERG a Philip GRIBBON. "Be Sustainable Recommendations" for FAIR Resources in Life Sciences research: EOSC-Life's Lessons. EMBO Journal. 2023. ISSN 1460-2075.
    3. MÜLLER, Heimo, Catarina LOPES-DIAS, Petr HOLUB, Markus PLASS, Emilian JUNGWIRTH, Robert REIHS, Paul R TORKE, Apostolos MALATRAS, Anouk BERGER, Heather COOMBS, Joakim DILLNER a Roxana MERINO-MARTINEZ. BIBBOX, a FAIR toolbox and App Store for Life Science Research. NEW BIOTECHNOLOGY. NETHERLANDS: ELSEVIER, 2023, roč. 77, s. 12-19. ISSN 1871-6784. doi:10.1016/j.nbt.2023.06.001.
    4. HOLUB, Petr, Heimo MÜLLER, Tomáš BÍL, Luca PIREDDU, Markus PLASS, Fabian PRASSER, Irene SCHLÜNDER, Kurt ZATLOUKAL, Rudolf NENUTIL a Tomáš BRÁZDIL. Privacy risks of whole-slide image sharing in digital pathology. Nature Communications. 2023, roč. 14, č. 2577. ISSN 2041-1723.
    5. PLASS, Markus, Rudolf WITTNER, Petr HOLUB, Francesca FREXIA, Cecilia MASCIA, Matej GALLO, Heimo MÜLLER a Jörg GEIGER. Provenance of specimen and data – A prerequisite for AI development in computational pathology. NEW BIOTECHNOLOGY. NETHERLANDS: ELSEVIER, 2023, roč. 2023, č. 78, s. 22-28. ISSN 1871-6784. doi:10.1016/j.nbt.2023.09.006.
    6. GALLO, Matej, Vojtěch KRAJŇANSKÝ, Rudolf NENUTIL, Petr HOLUB a Tomáš BRÁZDIL. Shedding light on the black box of a neural network used to detect prostate cancer in whole slide images by occlusion-based explainability. NEW BIOTECHNOLOGY. NETHERLANDS: ELSEVIER, 2023, roč. 78, December, s. 52-67. ISSN 1871-6784. doi:10.1016/j.nbt.2023.09.008.
    7. WITTNER, Rudolf, Petr HOLUB, Cecilia MASCIA, Francesca FREXIA, Heimo MÜLLER, Markus PLASS, Clare ALLOCCA, Fay BETSOU, Tony BURDETT, Ibon CANCIO, Adriane CHAPMAN, Martin CHAPMAN, Mélanie COURTOT, Vasa CURCIN, Johann EDER, Mark ELLIOT, Katrina EXTER, Carole GOBLE, Martin GOLEBIEWSKI, Bron KISLER, Andreas KREMER, Simone LEO, Sheng LIN-GIBSON, Anna MARSANO, Marco MATTAVELLI, Josh MOORE, Hiroki NAKAE, Isabelle PERSEIL, Ayat SALMAN, James SLUKA, Stian SOILAND-REYES, Caterina STRAMBIO-DE-CASTILLIA, Michael SUSSMAN, Jason R SWEDLOW, Kurt ZATLOUKAL a Jörg GEIGER. Toward a common standard for data and specimen provenance in life sciences. LEARNING HEALTH SYSTEMS. UNITED STATES: WILEY, 2023, roč. 8, č. 1, 9 s. ISSN 2379-6146. doi:10.1002/lrh2.10365.
    8. DAVID, Romain, Audrey RICHARD, Claire CONNELLAN, Katharina LAUER, Maria Luisa CHIUSANO, Carole GOBLE, Martin HOUDE, Isabel KEMMER, Antje KEPPLER, Philippe LIEUTAUD, Christian OHMANN, Maria PANAGIOTOPOULOU, Sara Raza KHAN, Arina RYBINA, Stian SOILAND-REYES, Charlotte WIT, Rudolf WITTNER, Rafael Andrade BUONO, Sarah Arnaud MARSH, Pauline AUDERGON, Dylan BONFILS, Carazo JOSE-MARIA, Remi CHARREL, Frederik COPPENS, Wolfgang FECKE, Claudia FILIPPONE, Eva Garcia ALVAREZ, Sheraz GUL, Henning HERMJAKOB, Katja HERZOG, Petr HOLUB, Lukasz KOZERA, Allyson LISTER, José LÓPEZ-CORONADO, Bénédicte MADON, Kurt MAJCEN, William MARTIN, Wolfgang MÜLLER, Elli PAPADOPOULOU, Christine M.A. PRAT, Paolo ROMANO, Sansone SUSANNA-ASSUNTA, Gary SAUNDERS, Niklas BLOMBERG a Jonathan EWBANK. Umbrella Data Management Plans to Integrate FAIR Data: Lessons From the ISIDORe and BY-COVID Consortia for Pandemic Preparedness. Data Science Journal. Ubiquity Press, 2023. ISSN 1683-1470. doi:10.5334/dsj-2023-035.
    9. HORÁK, Jiří, Katarína FURMANOVÁ, Barbora KOZLÍKOVÁ, Tomáš BRÁZDIL, Petr HOLUB, Martin KAČENGA, Matej GALLO, Rudolf NENUTIL, Jan BYŠKA a Vít RUSŇÁK. xOpat: eXplainable Open Pathology Analysis Tool. COMPUTER GRAPHICS FORUM. England: Wiley, 2023, roč. 42, č. 3, s. 63-73. ISSN 0167-7055. doi:10.1111/cgf.14812.

    2022

    1. BRÁZDIL, Tomáš, Matej GALLO, Rudolf NENUTIL, Andrej KUBANDA, Martin TOUFAR a Petr HOLUB. Automated annotations of epithelial cells and stroma in hematoxylin–eosin-stained whole-slide images using cytokeratin re-staining. The Journal of Pathology: Clinical Research. 2022, roč. 8, č. 2, s. 129-142. ISSN 2056-4538. doi:10.1002/cjp2.249.
    2. WITTNER, Rudolf, Cecilia MASCIA, Matej GALLO, Francesca FREXIA, Heimo MÜLLER, Markus PLASS, Jörg GEIGER a Petr HOLUB. Lightweight Distributed Provenance Model for Complex Real–world Environments. Scientific Data. Berlin: Nature Research, 2022, roč. 2022, č. 9, s. 1-19. ISSN 2052-4463. doi:10.1038/s41597-022-01537-6.
    3. GOVARTS, Eva, Liese GILLES, Stephanie BOPP, Petr HOLUB, Leslie MATALONGA, Roel VERMEULEN, Martine VRIJHEID, Sergi BELTRAN, Mette HARTLEV, Sarah JONES, Laura Rodriguez MARTIN, Arnout STANDAERT, Morris A SWERTZ, Jan THEUNIS, Xenia TRIER, Nina VOGEL, Koert VAN ESPEN, Sylvie REMY a Greet SCHOETERS. Position paper on management of personal data in environment and health research in Europe. Environment International. OXFORD: PERGAMON-ELSEVIER SCIENCE LTD, 2022, roč. 165. ISSN 0160-4120. doi:10.1016/j.envint.2022.107334.
    4. FREXIA, Francesca, Cecilia MASCIA, Rudolf WITTNER, Markus PLASS, Heimo MÜLLER, Jörg GEIGER a Petr HOLUB. The Common Provenance Model: Capturing Distributed Provenance in Life Sciences Processes. In Challenges of Trustable AI and Added-Value on Health. 2022. doi:10.3233/SHTI220489.

    2021

    1. REIHS, Robert, Rumyana PROYNOVA, Saher MAQSOOD, Maxmilian ATAIAN, Martin LABLANS, Philip R. QUINLAN, Emma LAWRENCE, Erinna BOWMAN, Esther VAN ENCKEVORT, Dominik František BUČÍK, Heimo MÜLLER a Petr HOLUB. BBMRI-ERIC Negotiator: Implementing Efficient Access to Biobanks. Biopreservation and Biobanking. NEW ROCHELLE: MARY ANN LIEBERT, INC, 2021, 8 s. ISSN 1947-5535. doi:10.1089/bio.2020.0144.
    2. WITTNER, Rudolf, Jörg GEIGER, Cecilia MASCIA, Francesca FREXIA, Heimo MULLER a Petr HOLUB. Enabling Trustworthy and Traceable Research by Non-Repudiable Opaque Provenance in a Distributed Environment. In Provenance Week 2021; Workshop on Provenance for Transparent Research. 2021.
    3. REHM, Heidi, Angela PAGE, Lindsay SMITH, Jeremy ADAMS, Gil ALTEROVITZ, Lawrence BABB, Maxmillian BARKLEY, Michael BAUDIS, Miroslav CUPÁK, Robert M DAVIES, Danielle DENISKO, Megan J DOERR, Lena I DOLMAN, Edward S DOVE, L Jonathan DURSI, Stephanie DYKE, James A EDDY, Karen EILBECK, Kyle P ELLROTT, Susan FAIRLEY, Khalid A FAKHRO, Helen V FIRTH, Michael S FITZSIMONS, Marc FIUME, Paul FLICEK, Ian M FORE, Mallory A FREEBERG, Robert R FREIMUTH, Lauren A FROMONT, Jonathan FUERTH, Clara L GAFF, Weiniu GAN, Elena M GHANAIM, David GLAZER, Robert C GREEN, Malachi GRIFFITH, Obi L GRIFFITH, Robert L GROSSMAN, Tudor GROZA, AUVIL, Jaime M GUIDRY, Roderic GUIGO, Dipayan GUPTA, Melissa A HAENDEL, Ada HAMOSH, David P HANSEN, Reece K HART, Dean Mitchell HARTLEY, David HAUSSLER, HENDRICKS-STURRUP, M RACHELE, Calvin HO, Ashley E HOBB, Michael M HOFFMAN, Oliver M HOFMANN, Petr HOLUB, Martin KUBA, Peter GOODHAND, Kathryn NORTH a Ewan BIRNEY. GA4GH: International policies and standards for data sharing across genomic research and healthcare. Cell Genomics. Cell Press, 2021, roč. 1, č. 2. ISSN 2666-979X. doi:10.1016/j.xgen.2021.100029.
    4. REHM, Heidi, Angela PAGE, Lindsay SMITH, Jeremy ADAMS, Gil ALTEROVITZ, Lawrence BABB, Maxmillian BARKLEY, Michael BAUDIS, Michael BEAUVAIS, Tim BECK, Jacques BECKMANN, Sergi BELTRAN, David BERNICK, Alexander BERNIER, James BONFIELD, Tiffany BOUGHTWOOD, Guillaume BOURQUE, Sarion BOWERS, Anthony BROOKES, Michael BRUDNO, Matthew BRUSH, David BUJOLD, Tony BURDETT, Orion BUSKE, Moran CABILI, Daniel CAMERON, Robert CARROLL, Esmeralda CASAS-SILVA, Debyani CHAKRAVARTY, Bimal CHAUDHARI, Shu Hui CHEN, Michael CHERRY, Justina CHUNG, Melissa CLINE, Hayley CLISSOLD, Robert COOK-DEEGAN, Mélanie COURTOT, Fiona CUNNINGHAM, Miro CUPAK, Robert DAVIES, Danielle DENISKO, Megan DOERR, Lena DOLMAN, Edward DOVE, Jonathan DURSI, Stephanie DYKE, James EDDY, Karen EILBECK, Kyle ELLROTT, Susan FAIRLEY, Khalid FAKHRO, Helen FIRTH, Michael FITZSIMONS, Marc FIUME, Paul FLICEK, Ian FORE, Mallory FREEBERG, Robert FREIMUTH, Lauren FROMONT, Jonathan FUERTH, Clara GAFF, Weiniu GAN, Elena GHANAIM, David GLAZER, Robert GREEN, Malachi GRIFFITH, Obi GRIFFITH, Robert GROSSMAN, Tudor GROZA, Jaime Guidry AUVIL, Roderic GUIGÓ, Dipayan GUPTA, Melissa HAENDEL, Ada HAMOSH, David HANSEN, Reece HART, Dean Mitchell HARTLEY, David HAUSSLER, Rachele HENDRICKS-STURRUP, Calvin HO, Ashley HOBB, Michael HOFFMAN, Oliver HOFMANN, Petr HOLUB, Jacob Shujui HSU, Jean-Pierre HUBAUX, Sarah HUNT, Ammar HUSAMI, Julius JACOBSEN, Saumya JAMUAR, Elizabeth JANES, Francis JEANSON, Aina JENÉ, Amber JOHNS, Yann JOLY, Steven JONES, Alexander KANITZ, Kazuto KATO, Thomas KEANE, Kristina KEKESI-LAFRANCE, Jerome KELLEHER, Giselle KERRY, Seik-Soon KHOR, Bartha KNOPPERS, Melissa KONOPKO, Kenjiro KOSAKI, Martin KUBA, Jonathan LAWSON, Rasko LEINONEN, Stephanie LI, Michael LIN, Mikael LINDEN, Xianglin LIU, Isuru Udara LIYANAGE, Javier LOPEZ, Anneke LUCASSEN, Michael LUKOWSKI, Alice MANN, John MARSHALL, Michele MATTIONI, Alejandro METKE-JIMENEZ, Anna MIDDLETON, Richard MILNE, Fruzsina MOLNÁR-GÁBOR, Nicola MULDER, Monica MUNOZ-TORRES, Rishi NAG, Hidewaki NAKAGAWA, Jamal NASIR, Arcadi NAVARRO, Tristan NELSON, Ania NIEWIELSKA, Amy NISSELLE, Jeffrey NIU, Tommi NYRÖNEN, O Connor BRIAN, Sabine OESTERLE, Soichi OGISHIMA, Vivian Ota WANG, Laura PAGLIONE, Emilio PALUMBO, Helen PARKINSON, Anthony PHILIPPAKIS, Angel PIZARRO, Andreas PRLIC, Jordi RAMBLA, Augusto RENDON, Renee RIDER, Peter ROBINSON, Kurt RODARMER, Laura Lyman RODRIGUEZ, Alan RUBIN, Manuel RUEDA, Gregory RUSHTON, Rosalyn RYAN, Gary SAUNDERS, Helen SCHUILENBURG, Torsten SCHWEDE, Serena SCOLLEN, Alexander SENF, Nathan SHEFFIELD, Neerjah SKANTHARAJAH, Albert SMITH, Heidi SOFIA, Dylan SPALDING, Amanda SPURDLE, Zornitza STARK, Lincoln STEIN, Makoto SUEMATSU, Patrick TAN, Jonathan TEDDS, Alastair THOMSON, Adrian THOROGOOD, Timothy TICKLE, Katsushi TOKUNAGA, Juha TÖRNROOS, David TORRENTS, Sean UPCHURCH, Alfonso VALENCIA, Roman VALLS GUIMERA, Jessica VAMATHEVAN, Susheel VARMA, Danya VEARS, Coby VINER, Craig VOISIN, Alex WAGNER, Susan WALLACE, Brian WALSH, Marc WILLIAMS, Eva WINKLER, Barbara WOLD, Grant WOOD, Patrick WOOLLEY, Chisato YAMASAKI, Andrew YATES, Christina YUNG, Lyndon ZASS, Ksenia ZAYTSEVA, Junjun ZHANG, Peter GOODHAND, Kathryn NORTH a Ewan BIRNEY. GA4GH: International policies and standards for data sharing across genomic research and healthcare. Cell Genomics. Cell Press, 2021, roč. 2021, č. 1, s. 1-9. ISSN 2666-979X. doi:10.1016/j.xgen.2021.100029.
    5. ANTONIADES, Athos, Maria PAPAIOANNOU, Apostolos MALATRAS, Gregory PAPAGREGORIOU, Heimo MULLER, Petr HOLUB, Constantinos DELTAS a Christos N SCHIZAS. Integration of Biobanks in National eHealth Ecosystems Facilitating Long-Term Longitudinal Clinical-Omics Studies and Citizens' Engagement in Research Through eHealthBioR. Frontiers in Digital Health. 2021.
    6. WITTNER, Rudolf, Petr HOLUB, Heimo MÜLLER, Joerg GEIGER, Carole GOBLE, Stian SOILAND-REYES, Luca PIREDDU, Francesca FREXIA, Cecilia MASCIA, Elliot FAIRWEATHER, Jason R SWEDLOW, Josh MOORE, Caterina STRAMBIO, David GRUNWALD a Hiroki NAKAE. ISO 23494: Biotechnology – Provenance Information Model for Biological Specimen And Data. In Lecture Notes in Computer Science. Cham: Springer, 2021. s. 222-225. ISBN 978-3-030-80959-1. doi:10.1007/978-3-030-80960-7_16.
    7. FAIRWEATHER, Elliot, Rudolf WITTNER, Martin CHAPMAN, Petr HOLUB a Vasa CURCIN. Non-repudiable provenance for clinical decision support systems. In Lecture Notes in Computer Science. Cham: Springer, 2021. s. 165-182. ISBN 978-3-030-80959-1. doi:10.1007/978-3-030-80960-7_10.
    8. LAWSON, Jonathan, Moran N CABILI, Giselle KERRY, Tiffany BOUGHTWOOD, Adrian THOROGOOD, Pinar ALPER, Sarion R BOWERS, Rebecca R BOYLES, Anthony J BROOKES, Matthew BRUSH, Tony BURDETT, Hayley CLISSOLD, Stacey DONNELLY, Stephanie O M DYKE, Mallory A FREEBERG, Melissa A HAENDEL, Chihiro HATA, Petr HOLUB, Francis JEANSON, Aina JENE, Minae KAWASHIMA, Shuichi KAWASHIMA, Melissa KONOPKO, Irene KYOMUGISHA, Haoyuan LI, Mikael LINDEN, Laura Lyman RODRIGUEZ, Mizuki MORITA, Nicola MULDER, Jean MULLER, Satoshi NAGAIE, Jamal NASIR, Soichi OGISHIMA, Vivian Ota WANG, Laura D PAGLIONE, Ravi N PANDYA, Helen PARKINSON, Anthony A PHILIPPAKIS, Fabian PRASSER, Jordi RAMBLA, Kathy REINOLD, Gregory A RUSHTON, Andrea SALTZMAN, Gary SAUNDERS, Heidi J SOFIA, John D SPALDING, Morris A SWERTZ, Ilia TULCHINSKY, J ESTHER, van ENCKEVORT, Susheel VARMA, Craig VOISIN, Natsuko YAMAMOTO, Chisato YAMASAKI, Lyndon ZASS, M JAIME, Guidry AUVIL, Tommi H NYRÖNEN a Mélanie COURTOT. The Data Use Ontology to streamline responsible access to human biomedical datasets. Cell Genomics. 2021, roč. 1, č. 2, s. 1-9, 12 s. ISSN 2666-979X. doi:10.1016/j.xgen.2021.100028.

    2020

    1. DUDOVÁ, Zdenka, Alice HÁLOVÁ, Dalibor VALÍK a Petr HOLUB. BBMRI-CZ as a Partner for Personalized Medicine and Translational Medical Research. In RANK 2020. 2020. ISBN 978-80-87436-17-2.
    2. HOLUB, Petr, Lukasz KOZERA, Francesco FLORINDI, Esther van ENCKEVORT, Morris SWERTZ, Robert REIHS, Andrea WUTTE, Dalibor VALÍK a Michaela Th MAYRHOFER. BBMRI-ERIC’s contributions to research and knowledge exchange on COVID-19. European Journal of Human Genetics. London: Nature Publishing Group, 2020, roč. 28, č. 6, s. 728-731. ISSN 1018-4813. doi:10.1038/s41431-020-0634-8.
    3. CATCHPOOLE, Daniel R, Francesco FLORINDI, Caitlin AHERN, Debra Leiolani GARCIA, Piper MULLINS, Esther Van ENCKEVORT, Andy ZAAYENGA, Michaela Th MAYRHOFER a Petr HOLUB. Expanding the BBMRI-ERIC Directory into a Global Catalogue of COVID-19–Ready Collections: A Joint Initiative of BBMRI-ERIC and ISBER. Biopreservation and Biobanking. 2020, roč. 18, č. 5, s. 479-480. doi:10.1089/bio.2020.29075.drc.

    2019

    1. SAUNDERS, Gary, Michael BAUDIS, Regina BECKER, Sergi BELTRAN, Christophe BÉROUD, Ewan BIRNEY, Cath BROOKSBANK, Søren BRUNAK, Marc Van den BULCKE, Rachel DRYSDALE, Salvador CAPELLA-GUTIERREZ, Paul FLICEK, Francesco FLORINDI, Peter GOODHAND, Ivo GUT, Jaap HERINGA, Petr HOLUB, Jef HOOYBERGHS, Nick JUTY, Thomas M KEANE, Jan O KORBEL, Ilkka LAPPALAINEN, Brane LESKOSEK, Gert MATTHIJS, Michaela Th MAYRHOFER, Andres METSPALU, Arcadi NAVARRO, Steven NEWHOUSE, Tommi NYRÖNEN, Angela PAGE, Bengt PERSSON, Aarno PALOTIE, Helen PARKINSON, Jordi RAMBLA, David SALGADO, Erik STEINFELDER, Morris A SWERTZ, Alfonso VALENCIA, Susheel VARMA, Niklas BLOMBERG a Serena SCOLLEN. Leveraging European infrastructures to access 1 million human genomes by 2022. Nature Reviews Genetics. 2019, roč. 20, č. 11, s. 692-701, 9 s. ISSN 1471-0056. doi:10.1038/s41576-019-0156-9.
    2. MATE, Sebastian, Marvin KAMPF, Wolfgang RÖDLE, Stefan KRAUS, Rumyana PROYNOVA, Kaisa SILANDER, Lars EBERT, Martin LABLANS, Christina SCHÜTTLER, Christian KNELL, Niina EKLUND, Michael HUMMEL, Petr HOLUB a Hans-Ulrich PROKOSCH. Pan-European Data Harmonization for Biobanks in ADOPT BBMRI-ERIC. Appl Clin Inform. 2019, roč. 10, č. 04, s. 679-692. doi:10.1055/s-0039-1695793.
    3. PETERS, K, J BRADBURY, S BERGMANN, M CAPUCCINI, M CASCANTE, Atauri P DE, TMD EBBELS, C FOGUET, R GLEN, A GONZALEZ-BELTRAN, UL GUNTHER, E HANDAKAS, T HANKEMEIER, K HAUG, S HERMAN, Petr HOLUB, M IZZO, D JACOB, D JOHNSON, F JOURDAN, N KALE, I KARAMAN, B KHALILI, PE KHONSARI, K KULTIMA, S LAMPA, A LARSSON, C LUDWIG, P MORENO, S NEUMANN, JA NOVELLA, O Donovan C, JTM PEARCE, A PELUSO, ME PIRAS, L PIREDDU, MAC REED, P ROCCA-SERRA, P ROGER, A ROSATO, R RUEEDI, C RUTTKIES, N SADAWI, RM SALEK, SA SANSONE, V SELIVANOV, O SPJUTH, D SCHOBER, EA THEVENOT, M TOMASONI, M VAN RIJSWIJK, M VAN VLIET, MR VIANT, RJM WEBER, G ZANETTI a C STEINBECK. PhenoMeNal: processing and analysis of metabolomics data in the cloud. GIGASCIENCE. OXFORD: OXFORD UNIV PRESS, 2019, roč. 8, č. 2, 12 s. ISSN 2047-217X. doi:10.1093/gigascience/giy149.

    2018

    1. TROUBIL, Pavel, Hana RUDOVÁ a Petr HOLUB. Dynamic Reconfiguration in Multigroup Multicast Routing under Uncertainty. Journal of Heuristics. Springer, 2018, roč. 24, č. 3, s. 395-423. ISSN 1381-1231. doi:10.1007/s10732-017-9339-8.
    2. HOLUB, Petr, Florian KOHLMAYER, Fabian PRASSER, Michaela Theresia MAYRHOFER, Irene SCHLUNDER, Gillian M. MARTIN, Sara CASATI, Lefteris KOUMAKIS, Andrea WUTTE, Lukas KOZERA, Dominik STRAPAGIEL, Gabriele ANTON, Gianluigi ZANETTI, Osman Ugur SEZERMAN, Maimuna MENDY, Dalibor VALÍK, Marialuisa LAVITRANO, Georges DAGHER, Kurt ZATLOUKAL, GertJan B. VAN OMMEN a Jan-Eric LITTON. Enhancing Reuse of Data and Biological Material in Medical Research: From FAIR to FAIR-Health. Biopreservation and Biobanking. NEW ROCHELLE: MARY ANN LIEBERT, INC, 2018, roč. 16, č. 2, s. 97-105. ISSN 1947-5535. doi:10.1089/bio.2017.0110.
    3. POLČÁK, Radim, Leoš ŠEVČÍK, Michal KOŠČÍK, Jakub KLODWIG a Petr HOLUB. Metodika aplikace GDPR na výzkumná data v prostředí vysokých škol v ČR. 1. vydání. Brno: Neuveden, 2018. 156 s. doi:10.5281/zenodo.2532860.

    2017

    1. PROYNOVA, Rumyana, Diogo ALEXANDRE, Martin LABLANS, David VAN ENCKEVORT, Sebastian MATE, Niina EKLUND, Kaisa SILANDER, Michael HUMMEL, Petr HOLUB a Frank ÜCKERT. A Decentralized IT Architecture for Locating and Negotiating Access to Biobank Samples. Stud Health Technol Inform. Netherlands: IOS Press, 2017, roč. 243, s. 75-79, 6 s. ISSN 0926-9630. doi:10.3233/978-1-61499-808-2-75.
    2. PANG, Chao, Fleur KELPIN, David VAN ENCKEVORT, Niina EKLUND, Kaisa SILANDER, Dennis HENDRIKSEN, Mark DE HAAN, Jonathan JETTEN, Tommy DE BOER, Bart CHARBON, Petr HOLUB, Hans HILLEGE a Morris A. SWERTZ. BiobankUniverse: automatic matchmaking between datasets for biobank data discovery and integration. Bioinformatics. Oxford: Oxford University Press, 2017, roč. 33, č. 22, s. 3627-3634. ISSN 1367-4803. doi:10.1093/bioinformatics/btx478.
    3. HOFER-PICOUT, Philipp, Horst PICHLER, Johann EDER, Sabrina B. NEURURER, Heimo MÜLLER, Robert REIHS, Petr HOLUB, Thomas INSAM a Georg GOEBEL. Conception and Implementation of an Austrian Biobank Directory Integration Framework. Biopreservation and Biobanking. NEW ROCHELLE: MARY ANN LIEBERT, INC, 2017, roč. 15, č. 4, s. 332-340. ISSN 1947-5535. doi:10.1089/bio.2016.0113.
    4. JIMÉNEZ, Rafael C, Mateusz KUZAK, Monther ALHAMDOOSH, Michelle BARKER, Bérénice BATUT, Mikael BORG, Salvador CAPELLA-GUTIERREZ, Neil Chue HONG, Martin COOK, Manuel CORPAS, Madison FLANNERY, Leyla GARCIA, Josep Ll GELPÍ, Simon GLADMAN, Carole GOBLE, Montserrat González FERREIRO, Alejandra GONZALEZ-BELTRAN, Philippa C GRIFFIN, Björn GRÜNING, Jonas HAGBERG, Petr HOLUB, Rob HOOFT, Jon ISON, Daniel S KATZ, Brane LESKOŠEK, Federico López GÓMEZ, Luis J OLIVEIRA, David MELLOR, Rowland MOSBERGEN, Nicola MULDER, Yasset PEREZ-RIVEROL, Robert PERGL, Horst PICHLER, Bernard POPE, Ferran SANZ, Maria V SCHNEIDER, Victoria STODDEN, Radosław SUCHECKI, Radka SVOBODOVÁ VAŘEKOVÁ, Harry-Anton TALVIK, Ilian TODOROV, Andrew TRELOAR, Sonika TYAGI, Maarten van GOMPEL, Daniel VAUGHAN, Allegra VIA, Xiaochuan WANG, Nathan S WATSON-HAIGH a Crouch STEVE. Four simple recommendations to encourage best practices in research software. F1000Research. 2017, roč. 6, JUN, s. 876-888. ISSN 2046-1402. doi:10.12688/f1000research.11407.1.

    2016

    1. HOLUB, Petr, Morris A. SWERTZ, Robert REIHS, David VAN ENCKEVORT, Heimo MÜLLER a Jan-Eric LITTON. BBMRI-ERIC Directory: 515 Biobanks with Over 60 Million Biological Samples. Biopreservation and Biobanking. NEW ROCHELLE: MARY ANN LIEBERT, INC, 2016, roč. 14, č. 6, s. 559-562. ISSN 1947-5535. doi:10.1089/bio.2016.0088.
    2. MAYRHOFER, Michaela Th., Petr HOLUB, Andrea WUTTE a Jan-Eric LITTON. BBMRI-ERIC: the novel gateway to biobanks. Bundesgesundheitsblatt - Gesundheitsforschung - Gesundheitsschutz. 2016, roč. 2016, s. 1-6. ISSN 1437-1588. doi:10.1007/s00103-015-2301-8.
    3. KABÁT, Milan, Vojtěch DAVID, Petr HOLUB a Martin PULEC. High-performance forward error correction: Enabling multi-gigabit flows and beyond on commodity GPU and CPU hardware in presence of packet loss. Future Generation Computer Systems. Amsterdam, The Netherlands: Elsevier Science, 2016, roč. 54, č. 1, s. 326 - 335. ISSN 0167-739X. doi:10.1016/j.future.2015.04.007.
    4. RUSŇÁK, Vít, Lukáš RUČKA a Petr HOLUB. Toward Natural Multi-User Interaction in Advanced Collaborative Display Environments. Future Generation Computer Systems. Amsterdam, The Netherlands: Elsevier Science, 2016, roč. 54, January 2016, s. 313-325. ISSN 0167-739X. doi:10.1016/j.future.2015.03.019.
    5. MERINO-MARTINEZ, Roxana, Loreana NORLIN, David VAN ENCKEVORT, Gabriele ANTON, Simone SCHUFFENHAUER, Kaisa SILANDER, Linda MOOK, Petr HOLUB, Raffael BILD, Morris SWERTZ a Jan-Eric LITTON. Towards Global Biobank Integration by Implementation of the Minimum Information About Biobank data Sharing (MIABIS 2.0 Core). Biopreservation and Biobanking. 2016. ISSN 1947-5535. doi:10.1089/bio.2015.0070.

    2015

    1. TROUBIL, Pavel, Hana RUDOVÁ a Petr HOLUB. Multicast Routing for High-Quality Multimedia Environments: Deployment and New Problems. In Ingo Schwab, Leo van Moergestel, Gil Gonçalves. INTELLI 2015, The Fourth International Conference on Intelligent Systems and Applications. USA: IARIA, 2015. s. 61-65. ISBN 978-1-61208-437-4.
    2. RUSŇÁK, Vít, Lukáš RUČKA, Pavel KAJABA, Desana DAXNEROVÁ, Matej MINÁRIK, Jiří KAREŠ, Michal BÁBEL a Petr HOLUB. MUSE framework 2.0. 2015.
    3. SLOVÁK, Petr, Petr HOLUB a Pavel TROUBIL. Videokonferenční prostředí pro komunikaci vzdálených skupin a způsob komunikace vzdálených skupin v systému videokonferenčního prostředí. 2015. Patent. Číslo: 305294. Vydavatel: Úřad průmyslového vlastnictví. Místo vydání: Praha, ČR. Název vlastníka: Masarykova Univerzita & CESNET. Datum registrace: 3. 6. 2009. Datum přijetí: 10. 6. 2015.

    2014

    1. MAREK, Jiří, Hana RUDOVÁ a Petr HOLUB. Local Search Heuristics for Media Streams Planning with Transcoding. In IEEE 13th International Symposium on Network Computing and Applications NCA 2014. USA: IEEE, 2014. s. 167-170. ISBN 978-1-4799-5393-6. doi:10.1109/NCA.2014.32.
    2. TROUBIL, Pavel, Hana RUDOVÁ a Petr HOLUB. Media Streams Planning with Uncertain Link Capacities. In IEEE 13th International Symposium on Network Computing and Applications NCA 2014. USA: IEEE, 2014. s. 197-204. ISBN 978-1-4799-5393-6. doi:10.1109/NCA.2014.37.
    3. RUSŇÁK, Vít, Lukáš RUČKA, Pavel KAJABA, Desana DAXNEROVÁ, Matej MINÁRIK, Jiří KAREŠ, Michal BÁBEL a Petr HOLUB. MUSE framework 1.5. 2014.

    2013

    1. HOLUB, Petr, Ondřej VOJTÍŠEK, Dalibor VALÍK, Kristína GREPLOVÁ, Dana KNOFLÍČKOVÁ a Rudolf NENUTIL. BBMRI_CZ Index Service. 2013.
    2. CoUniverse 1.0 (software)
      TROUBIL, Pavel, Jiří MAREK, Petr HOLUB a Miloš LIŠKA. CoUniverse 1.0. 2013.
    3. HOLUB, Petr, Martin ŠROM, Martin PULEC, Jiří MATELA a Martin JIRMAN. GPU-accelerated DXT and JPEG compression schemes for low-latency network transmissions of HD, 2K, and 4K video. Future Generation Computer Systems. Amsterdam, The Netherlands: Elsevier Science, 2013, roč. 29, č. 8, s. 1991-2006. ISSN 0167-739X. doi:10.1016/j.future.2013.06.006.
    4. MAREK, Jiří, Petr HOLUB a Hana RUDOVÁ. Local Search Heuristics for Media Streams Planning Problem. In Leonard Barolli, Fatos Xhafa, Makoto Takizawa, Tomoya Enokido, Hui-Huang Hsu. Proceedings of the 7th IEEE International Conference on Advanced Information Networking and Applications. Washington: IEEE Computer Society, 2013. s. 945-953. ISBN 978-0-7695-4953-8. doi:10.1109/AINA.2013.132.
    5. TROUBIL, Pavel, Hana RUDOVÁ a Petr HOLUB. Media Streams Planning with Transcoding. In 12th IEEE International Symposium on Network Computing and Applications (NCA 2013). USA: IEEE, 2013. s. 41-48. ISBN 978-0-7685-5043-6. doi:10.1109/NCA.2013.46.
    6. RUSŇÁK, Vít, Lukáš RUČKA, Martin ĽUPTÁK a Petr HOLUB. MUSE framework 1.1.1. 2013.
    7. MATELA, Jiří, Martin JIRMAN a Petr HOLUB. Real-time JPEG2000 for Digital Cinema and Large-Scale Image Archiving. San Jose, CA, USA: NVIDIA Corporation, 2013. GPU Technology Conference.
    8. SOCHOR, Jan, Petr HOLUB a Ondřej VOJTÍŠEK. THALAMOSS Data Management Platform. 2013.
    9. RUSŇÁK, Vít, Lukáš RUČKA a Petr HOLUB. Towards User-Aware Multi-Touch Interaction Layer for Group Collaborative Systems. In Kučera, A.; Henzinger, Th.A.; Nešetřil, J.; Vojnar, T.; Antoš, D. Lecture Notes in Computer Science Volume 7721. Revised Selected Papers. Berlin Heidelberg: Springer-Verlag Berlin / Heidelberg, 2013. s. 200-212. ISBN 978-3-642-36044-2. doi:10.1007/978-3-642-36046-6_19.
    10. KŘENEK, Aleš, Petr HOLUB, Vlastimil HOLER, Daniel KOUŘIL, Filip PROCHÁZKA, Zdeněk HEJNA, Miroslav GURIČAN a František MULLER. 3.5 Million Smartmeters in the Cloud. In Simon Lin. Proceedings ISGC 2013. Trieste: PoS - Proceedings of Science, 2013. s. 180-189. ISSN 1824-8039.

    2012

    1. HOLUB, Petr, Martin PULEC, Jiří MATELA, Martin JIRMAN, Joe MAMBRETTI, Jim CHEN, Fei YEH a Luc RENAMBOT. CZ02: Remote Collaboration Over 8K Visualization Using UltraGrid and SAGE. Chicago, USA, 2012. GLIF Technical Working Group Meeting #18.
    2. SLOVÁK, Petr, Peter NOVÁK, Pavel TROUBIL, Vít RUSŇÁK, Petr HOLUB a Eric C. HOFER. Exploring collaboration in group-to-group videoconferencing. In Julie Dugdale, Cédric Masclet, Maria Antonietta Grasso, Jean François Boujut, Parina Hassanaly. From Research to Practice in the Design of Cooperative Systems: Results and Open Challenges; Proceedings of the 10th International Conference on the Design of Cooperative Systems. London: Springer, 2012. s. 229-244, 15 s. ISBN 978-1-4471-4092-4. doi:10.1007/978-1-4471-4093-1_16.
    3. MATELA, Jiří, Petr HOLUB, Martin JIRMAN a Martin ŠROM. GPU-specific reformulations of image compression algorithms. In Tescher, AG. Proceedings of Applications of Digital Image Processing XXXV. 8499. vyd. BELLINGHAM, WA 98227-0010 USA: SPIE-INT SOC OPTICAL ENGINEERING, 2012. s. nestránkováno, 8 s. ISBN 978-0-8194-9216-6. doi:10.1117/12.929971.
    4. RUČKA, Lukáš, Vít RUSŇÁK a Petr HOLUB. Libkerat - TUIO 2.0 implementation, version 1.0. 2012.
    5. MATELA, Jiří, Martin ŠROM a Petr HOLUB. Low GPU Occupancy Approach to Fast Arithmetic Coding in JPEG2000. In Lecture Notes in Computer Science 7119. Heidelberg: Springer Berlin / Heidelberg, 2012. s. 136-145. ISBN 978-3-642-25928-9. doi:10.1007/978-3-642-25929-6_13.
    6. KABÁT, Milan a Petr HOLUB. Parallelized LDGM Coding for Demanding Multimedia Applications. In Antonin Kucera, Thomas A. Henzinger, Jaroslav Nesetril, Tomas Vojnar, David Antos. Memics 2012, Eighth Doctoral Workshop on Mathematical and Engineering Methods in Computer Science. First edition. Brno: Novpress s.r.o., 2012. s. 28-37. ISBN 978-80-87342-15-2.
    7. HOLUB, Petr, Kamila GREPLOVÁ, Dana KNOFLÍČKOVÁ a Dalibor VALÍK. The Biobanking Research Infrastructurec BBMRI_CZ: a Critical Tool to Enhance. Klinická onkologie. Praha: Česká lékařská společnost J.E.Purkyně, 2012, roč. 2012, č. 2, s. 2S78- 2S81, 4 s. ISSN 0862-495X.
    8. HOLUB, Petr, Jiří MATELA, Martin PULEC a Martin ŠROM. UltraGrid: Low-Latency High-Quality Video Transmissions on Commodity Hardware. In Proceedings of the 20th ACM international conference on Multimedia. New York, NY, USA: ACM, 2012. s. 1457-1460. ISBN 978-1-4503-1089-5. doi:10.1145/2393347.2396519.
    9. UltraGrid 1.1 (software)
      HOLUB, Petr, Martin PULEC, Jiří MATELA, Martin ŠROM a Martin JIRMAN. UltraGrid 1.1. 2012.

    2011

    1. HOLUB, Petr, Hana RUDOVÁ a Miloš LIŠKA. Data Transfer Planning with Tree Placement for Collaborative Environments. Constraints. Springer, 2011, roč. 16, č. 3, s. 283-316. ISSN 1383-7133. doi:10.1007/s10601-011-9106-7.
    2. MATELA, Jiří, Vít RUSŇÁK a Petr HOLUB. Efficient JPEG2000 EBCOT Context Modeling for Massively Parallel Architectures. In Storer, James A. and Marcellin, Michael W. Data Compression Conference (DCC), 2011. Washington, DC, USA: IEEE Computer Society, 2011. s. 423-432. ISBN 978-0-7695-4352-9. doi:10.1109/DCC.2011.49.
    3. SLOVÁK, Petr, Peter NOVÁK, Pavel TROUBIL, Petr HOLUB a Eric HOFER. Exploring Trust in Group-to-Group Video-Conferencing. In CHI EA '11 Proceedings of the 2011 annual conference extended abstracts on Human factors in computing systems. New York, NY, USA: ACM New York, NY, USA, 2011. s. 1459-1464. ISBN 978-1-4503-0268-5. doi:10.1145/1979742.1979791.
    4. MATELA, Jiří, Vít RUSŇÁK a Petr HOLUB. GPU-Based Sample-Parallel Context Modeling for EBCOT in JPEG2000. In Sixth Doctoral Workshop on Mathematical and Engineering Methods in Computer Science -- Selected Papers. Dagstuhl, Germany: Schloss Dagstuhl--Leibniz-Zentrum fuer Informatik, 2011. s. 77--84. ISBN 978-3-939897-22-4.
    5. ANTOŠ, David, Petr HOLUB a Ivana KŘENKOVÁ. Kterak posluchárny spojovati a ještě záznam poříditi aneb audiovizuální technika na MU. ÚVT MU, 2011. 5 s. Zpravodaj ÚVT MU, roč. XXI, č. 3. ISSN 1212-0901.
    6. multiOUT (software)
      MATELA, Jiří, Martin PULEC a Petr HOLUB. multiOUT. 2011.
    7. RŮŽIČKA, Jan, Miroslav VOZŇÁK, Petr HOLUB, Jiří MATELA, Michal KRSEK, Jiří NAVRÁTIL, Lukáš MACURA, Miloš LIŠKA a Filip ŘEZÁČ. Seminář multimédií. 2011.
    8. PULEC, Martin, Jiří MATELA a Petr HOLUB. UltraGrid Streaming to SAGE. 2011.
    9. UltraGrid 0.9 (software)
      PULEC, Martin, Martin ŠROM, Petr HOLUB a Jiří MATELA. UltraGrid 0.9. 2011.
    10. UltraGrid 1.0 (software)
      PULEC, Martin, Petr HOLUB, Jiří MATELA, Martin ŠROM a Martin JIRMAN. UltraGrid 1.0. 2011.
    11. BALÁKOVÁ, Lenka, Petr ŠTOURAČ, Ivo KŘIKAVA, Pavel ŠEVČÍK, Daniel SCHWARZ, Ivo ŠNÁBL, Radim ŠUSTR a Petr HOLUB. Využití e-learningového portálu AKUTNE.CZ při studiu medicíny. In Petr Sojka, Martin Kvizda. Sborník SCO 2011. 1. vyd. Brno: MUNI Press, 2011. s. 165-169. ISBN 978-80-210-5528-5.

    2010

    1. HOLUB, Petr, Miloš LIŠKA, Hana RUDOVÁ a Pavel TROUBIL. Comparison of CP and IP Techniques for Data Transfer Planning. In Proceedings of the Eleventh AI*IA Symposium on Artificial Intelligence. 2010. ISBN 978-88-904924-1-9.
    2. LIŠKA, Miloš, Petr HOLUB, Andrew LAKE a John VOLLBRECHT. CoUniverse Orchestrated Collaborative Environments with Dynamic Circuit Networks. 2010 Ninth International Conference on Networks, 2010. s. 300-305. ISBN 978-0-7695-3979-9.
    3. WELSHONS, Kenny, Patrick DORN, Andrei HUTANU, Petr HOLUB, John VOLLBRECHT a Gabrielle ALLEN. Design and Implementation of a Production Dynamically Configurable Testbed. In TG '10 Proceedings of the 2010 TeraGrid Conference. Pittsburgh, PA, USA: ACM New York, NY, USA, 2010. s. 1-8. ISBN 978-1-60558-818-6.
    4. TROUBIL, Pavel a Petr HOLUB. Eye-Control of Videoconferencing Environment Using Common Web-Cameras. In Proceedings of the IADIS International Conferences Collaborative Technologies 2010 and Web Based Communities 2010. Freiburg: IADIS Press, 2010. s. 153-156. ISBN 978-972-8939-21-2.
    5. SLOVÁK, Petr, Pavel TROUBIL a Petr HOLUB. GColl: enhancing trust in flexible group-to-group videoconferencing. In Proceedings of the 28th of the international conference extended abstracts on Human factors in computing systems. New York, NY, USA: ACM, 2010. s. 3607-3612. ISBN 978-1-60558-930-5.
    6. MATELA, Jiří, Vít RUSŇÁK a Petr HOLUB. GPU-Based Sample-Parallel Context Modeling for EBCOT in JPEG2000. In MEMICS 2010 Proceedings. first. Brno: NOVPRESS, 2010. s. 126-134. ISBN 978-80-87342-10-7.
    7. HOLUB, Petr. H.323 for Medical Application and Virtual Laboratories. In 3rd E2EWorkshop on Provisioning E2E Services. 2010.
    8. HOLUB, Petr. Network-Based Collaborative Environments. In Informatics Colloquium FI MU. 2010.
    9. HOLUB, Petr. Unassisted Lecture Recording at Masaryk University. In 3rd TF-Media task force meeting. 2010.
    10. RUDA, Miroslav, Zdeněk ŠUSTR, Jiří SITERA, David ANTOŠ, Lukáš HEJTMÁNEK a Petr HOLUB. Virtual Clusters as a New Service of MetaCentrum, the Czech NGI. In Cracow Grid Workshop '09. Krakow: Academic Computer Centre CYFRONET AGH, 2010. s. 64-71. ISBN 978-83-61433-01-9.
    11. HOLUB, Petr a Eva HLADKÁ. Virtual Multicast. In Trends in Telecommunications Technologies. 1. vyd. Vukovar, Croatia: IN-TECH, 2010. s. 63-85. ISBN 978-953-307-072-8.

    2009

    1. LIŠKA, Miloš a Petr HOLUB. CoUniverse: Framework for Building Self-Organizing Collaborative Environments Using Extreme-Bandwidth Media Applications. In The Eighth International Conference on Networks ICN 2009. Cancún, Mexico: IARIA, 2009. s. 259-265. ISBN 978-0-7695-3552-4.
    2. HOLUB, Petr a David ANTOŠ. e-Infrastruktury - komplexní nástroje pro podporu vědy, výzkumu i výuky. Masarykova univerzita, 2009. 7 s. Zpravodaj ÚVT MU, 19, 4, 1-6. ISSN 1212-0901.
    3. SLOVÁK, Petr, Pavel TROUBIL a Petr HOLUB. GColl : A Flexible Videoconferencing Environment for Group-to-Group Interaction. In Human-Computer Interaction – INTERACT 2009, Lecture Notes in Computer Science Volume 5727. 2009. vyd. Uppsala, Sweden: Springer Berlin / Heidelberg, 2009. s. 165-168. ISBN 978-3-642-03657-6. doi:10.1007/978-3-642-03658-3_22.
    4. SLOVÁK, Petr, Pavel TROUBIL a Petr HOLUB. GColl: A Flexible Videoconferencing Environment for Group-to-Group Interaction. In Annual Doctoral Workshop on Mathematical and Engineering Methods in Computer Science. 2009. ISBN 978-80-87342-04-6.
    5. SLOVÁK, Petr, Pavel TROUBIL a Petr HOLUB. GColl Group-to-group Videoconferencing System: Design and First Experiences. In The 5th International ICST Conference on Collaborative Computing: Networking, Applications and Worksharing. Neuveden: Neuveden, 2009. 9 s. ISBN 978-963-9799-76-9.
    6. HOLUB, Petr, Miloš LIŠKA, Andrew LAKE, Chris TRACY, Tom LEHMAN, John VOLLBRECHT a Brian CASHMAN. Interfacing CoUniverse & Internet2 DCN. In Internet2 Spring Member Meeting 2009. 2009.
    7. HOLUB, Petr, Miloš LIŠKA, Andrew LAKE a John VOLLBRECHT. Interfacing CoUniverse & Internet2 DCN. In Internet2 Joint Tech Meeting 2009. 2009.
    8. PROCHÁZKA, Michal, Petr HOLUB a Eva HLADKÁ. jSon: Network of Active Elements with Peer-to-Peer Control Plane. In The Eighth International Conference on Networks ICN 2009. Cancun, Mexico: IARIA, 2009. 8 s. ISBN 978-0-7695-3552-4.
    9. ANTOŠ, David, Jiří SITERA, Luděk MATYSKA a Petr HOLUB. MetaCenter Virtual Networks. In Cracow Grid Workshop 2008. Cracow, Poland: Cyfronet AGH, Kraków, Poland, 2009. s. 86-93. ISBN 978-83-61433-00-2.
    10. ŠUSTR, Zdeněk, Jiří SITERA, Miloš MULAČ, Miroslav RUDA, David ANTOŠ, Lukáš HEJTMÁNEK, Petr HOLUB, Zdeněk SALVET a Luděk MATYSKA. MetaCentrum, the Czech Virtualized NGI. 2009.
    11. HOLUB, Petr, Miloš LIŠKA, Jiří MATELA, Martin BENEŠ a Ian N. WESLEY-SMITH. UltraGrid-20090105. 2009.
    12. ANTOŠ, David, Luděk MATYSKA, Petr HOLUB a Jiří SITERA. VirtCloud: Virtual Network for User-controlled Virtual Clusters. 2009.
    13. ANTOŠ, David, Luděk MATYSKA, Petr HOLUB a Jiří SITERA. VirtCloud: Virtualising Network for Grid Environments--First Experiences. In The 23rd IEEE International Conference on Advanced Information Networking and Applications AINA 2009. Bradford, UK: IEEE Comp. Soc., 2009. s. 876-883. ISBN 978-1-4244-4000-9.
    14. RUDA, Miroslav, Zdeněk ŠUSTR, Jiří SITERA, David ANTOŠ, Lukáš HEJTMÁNEK, Petr HOLUB a Miloš MULAČ. Virtual Clusters as a New Service of MetaCentrum, the Czech NGI; CESNET technical report 17/2009. 2009.
    15. VOJTĚCH, Josef, Miloslav HŮLA, Jan RADIL, Miroslav KARÁSEK, Stanislav ŠÍMA, Jan NEJMAN a Petr HOLUB. Zařízení pro skupinové vysílání optických signálů v Internetu a jiných sítích. 2009. Patent. Číslo: 300811. Vydavatel: Úřad průmyslového vlastnictví. Místo vydání: Praha. Název vlastníka: CESNET Zájmové sdružení právnických osob, Praha 6, CZ. Datum registrace: 4. 12. 2007. Datum přijetí: 2. 7. 2009.

    2008

    1. LIŠKA, Miloš a Petr HOLUB. CoUniverse: Framework for Building Self-organizing Collaborative Environments Using Extreme-Bandwidth Media Applications. In Lecture Notes in Computer Science vol. 5415 Euro-Par 2008 Workshops - Parallel Processing. Las Palmas de Gran Canaria, Spain: Springer Berlin / Heidelberg, 2008. s. 339-351, 12 s. ISBN 978-3-642-00954-9.
    2. REBOK, Tomáš a Petr HOLUB. Distributed Synchronous Infrastructure for Multimedia Streams Transmission and Processing. In Networking Studies II : Selected Technical Reports. Praha: CESNET z.s.p.o., 2008. s. 147-169. ISBN 978-80-254-2151-2.
    3. HOLUB, Petr, Michael ANGASTINIOTIS, Christos SHAMMAS, John OLD, Fotis GEORGATOS a Carsten LEDERER. Evaluation of the Introduction of the Use of e-Infrastructure Tools in the Research of Thalassaemia and Other Haemoglobinopathies. In 2nd Ithanet Scientific Workshop, Singapore 2008. 2008.
    4. MATYSKA, Luděk, Eva HLADKÁ, Petr HOLUB a Miloš LIŠKA. High Quality Large Scale Virtual Classroom. In Proceedings of the 14th International Conference of European University Information Systems (EUNIS 2008). Århus, Denmark: Aarhus University, 2008. 4 s. ISBN 978-87-91234-58-3.
    5. WESLEY-SMITH, Ian N., Miloš LIŠKA a Petr HOLUB. Implementation of DXT Compression for UltraGrid. CESNET, 2008. Technical report 4/2008.
    6. ANTOŠ, David, Jiří SITERA, Luděk MATYSKA a Petr HOLUB. MetaCenter Virtual Networks. In Cracow Grid Workshop 2008. 2008.
    7. HOLUB, Petr. UltraGrid. In CineGrid International Workshop 2008 (3rd annual). 2008.
    8. HOLUB, Petr, Miloš LIŠKA, Jiří MATELA a Ian N. WESLEY-SMITH. UltraGrid-20080530. 2008.
    9. HOLUB, Petr. Updates on UltraGrid Platform. In ResearchChannel Working Group, Internet2 Fall Member Meeting, New Orleans, LA, USA, 2008. 2008.
    10. HOLUB, Petr. Updates on UltraGrid Platform. Internet2 Spring Member Meeting, Arlington, VA, USA, 2008.
    11. HOLUB, Petr. VirtCloud & CoUniverse: On E2E Services for Grids and Multimedia. In TERENA End-to-End Provisioning Workshop 2008. 2008.

    2007

    1. KAPIČKA, Libor, Pavel KUBÁČEK a Petr HOLUB. Bonding and aromaticity of cyclic phosphazenes viewed as interaction of Dnh fragments. Journal of Molecular Structure (Theochem). Amsterdam: Elsevier Science, 2007, roč. 820, 1-3, s. 148-158. ISSN 0166-1280.
    2. EILAND, Daniel, Thomas STERLING, Amy APON, Box LEANGSUKSUN a Petr HOLUB. Community Building in Distance Learning Environments: Using uncompressed high-definition videos as a medium for classroom interactivity. Chicago, USA: AccessGrid Retreat, 2007. AccessGrid Retreat 2007.
    3. HOLUB, Petr a Eva HLADKÁ. Distributed Active Element in 10Gbps Network. In ICT 2007, 14th International Conference on Telecommunications. Penang, Malaysia: IEEE/MICC, 2007. s. 455-460. ISBN 978-1-4244-1094-1.
    4. REBOK, Tomáš a Petr HOLUB. Distributed Synchronous Infrastructure for Multimedia Streams Transmission and Processing. CESNET z.s.p.o., 2007. 22 s. 19/2007.
    5. HOLUB, Petr, Ravi PARUCHURI, Stacey SIMMONS, Tomáš REBOK, Andrei HUTANU, Daniel EILAND a Miloš LIŠKA. Enabling Technologies for Teaching an HPC Class as a Distributed Course. In SPR2007 - The 9th Annual SURA/ViDe Conference, Atlanta, Internet2, USA. 2007.
    6. MATYSKA, Luděk, Petr HOLUB a Eva HLADKÁ. HD Collaborative Framework for Distributed Distance Learning. In Proceedings of the 4th High-End Visualization Workshop. Rakousko: University of Innsbruck, 2007. s. 40-45. ISBN 978-3-86541-216-4.
    7. MATYSKA, Luděk, Eva HLADKÁ a Petr HOLUB. High Definition video ve výuce. In Emtech Education|Media|Technology Prague 2007. 2007.
    8. VEJVALKA, Jan, Petr HOLUB, Michal PROCHÁZKA, Miloš LIŠKA, Eva HLADKÁ, Michael ANGASTINIOTIS a Marina KLEANTHOUS. Ithanet - developing en infrastructure of electronic communication for Thalassaemia research. In Conference Proceedings of EMMIT 2007, Euro-Mediterranean Medical Informatics and Telemedicine, 3rd International Conference. , Mangalia 2007: Eds. Moisil, I., Teseleanu, M., Sicurello, F., 2007. s. 181-186. ISBN 978-973-739-423-1.
    9. HOLUB, Petr, Eva HLADKÁ, Michal PROCHÁZKA a Miloš LIŠKA. Secure and Pervasive Collaborative Platform for Medical Applications. Studies in Health Technology and Informatics. Amsterdam, The Netherlands: IOS Press, 2007, roč. 126, č. 1, s. 229-238. ISSN 0926-9630.
    10. HOLUB, Petr a Eva HLADKA. Streaming HD videa. In Sborník příspěvků konference Širokopásmové sítě a jejich aplikace. 1. vyd. Olomouc: Univerzita Palackého v Olomouci, 2007. s. 100-102. ISBN 978-80-244-1687-8.
    11. PROCHÁZKA, Michal, Luděk MATYSKA, Eva HLADKÁ, Daniel KOUŘIL a Petr HOLUB. Transparent Security for Collaborative Environments. In The 3rd International Conference on Collaborative Computing: Networking, Applications and Worksharing. White Plains, New York: ICST, 2007. 6 s. ISBN 1-4244-1317-6.
    12. HUTANU, Andrei, Yufeng XIN, Steven THORPE, Petr HOLUB, Ravi PARUCHURI, Daniel EILAND a Miloš LIŠKA. Uncompressed HD Video for Collaborative Teaching - An Experiment. In The 3rd International Conference on Collaborative Computing: Networking, Applications and Worksharing. White Plains, New York: ICST, 2007. 6 s. ISBN 1-4244-1317-6.
    13. HLADKÁ, Eva, Petr HOLUB a Michal PROCHÁZKA. Videokonference za zdí. Brno: MU, 2007. 4 s. Zpravodaj ÚVT MU, 17, 5, 8-11. ISSN 1212-0901.
    14. MATYSKA, Luděk, Eva HLADKÁ a Petr HOLUB. Virtual Classroom with a Time Shift. In Proceedings of the Eigth International Technology Based Higher Education and Training. Kumamoto: Kumamoto Univerzity, 2007. s. 1-8.
    15. MATYSKA, Luděk, Eva HLADKÁ a Petr HOLUB. Virtual Classroom with a Time Shift. In Programm and Abstracts of 8th International Conference on Information Technology Based Higher Education and Training. 2007.

    2006

    1. PROCHÁZKA, Michal, Petr HOLUB a Eva HLADKÁ. Active Element Network with P2P Control Plane. In Self-Organizing Systems, Lecture Notes in Computer Science Volume 4124. 2006.
    2. HOLUB, Petr, Eva HLADKÁ, Jiří DENEMARK a Tomáš REBOK. Active Elements for High-Definition Video Distribution. In ICT 2006, 13th International Conference on Telecommunications. Funchal, Madeira: University of Aveiro, Portugal, 2006. s. 1-4. ISBN 972-98368-4-1.
    3. HOLUB, Petr a Eva HLADKÁ. Distributed Active Element for High-Performance Data Distribution. In Network and Parallel Computing (NPC 2006). Tokio: University of Tokio, 2006. s. 27-36.
    4. HUTANU, Andrei, Gabrielle ALLEN, Stephen D. BECK, Petr HOLUB, Hartmut KAISER, Archit KULSHRESTHA, Miloš LIŠKA, Jon MACLAREN, Luděk MATYSKA, Ravi PARUCHURI, Steffen PROHASKA, Ed SEIDEL, Brygg ULLMER a Shalini VENKATARAMAN. Distributed and collaborative visualization of large data sets using high-speed networks. Future Generation Computer Systems. Amsterdam, The Netherlands: Elsevier Science, 2006, roč. 22, č. 8, s. 1004-1010. ISSN 0167-739X.
    5. HOLUB, Petr. HD Multi-point Videoconferencing. In TERENA Networking Conference 2006. 2006.
    6. HLADKÁ, Eva a Petr HOLUB. HDTV streaming. In Proceedings of Inteligent Technologies for Remote Information and Communication International Conference ITVIK 2006. Pardubice: UP Pardubice INTELIGENTNÍ TECHNOLOGIE PRO VZDÁLENOU INFORMACI A KOMUNIKACI, 2006. s. 31 -33. ISBN 80-903478-5-1.
    7. HOLUB, Petr, Luděk MATYSKA, Miloš LIŠKA, Lukáš HEJTMÁNEK, Jiří DENEMARK, Tomáš REBOK, Andrei HUTANU, Ravi PARUCHURI, Jan RADIL a Eva HLADKÁ. High-definition multimedia for multiparty low-latency interactive communication. Future Generation Computer Systems. Amsterdam, The Netherlands: Elsevier Science, 2006, roč. 22, č. 8, s. 856-861. ISSN 0167-739X.
    8. HOLUB, Petr, Eva HLADKÁ a Luděk MATYSKA. iGrid2005. Brno: Masarykova univerzita v Brně, 2006. 6 s. Zpravodaj ÚVT MU, 16, 3, 12-17. ISSN 1212-0901.
    9. HOLUB, Petr. Multi-Point Uncompressed HD Conferencing Using UltraGrid. In WACE 2006. 2006.
    10. ANTOŠ, David, Vojtěch ŘEHÁK a Petr HOLUB. Packet Filtering for FPGA-Based Routing Accelerator. In CESNET Conference 2006 Proceedings. Prague: CESNET, z. s. p. o., 2006. s. 161--173. ISBN 80-239-6533-6.
    11. REBOK, Tomáš, Petr HOLUB a Eva HLADKÁ. Quality of Service Oriented Active Router Design. In Proceedings of MIPRO 2006 / Hypermedia and Grid Systems. Opatija (Croatia): Croatian Society for Information and Communication Technology, Electronics and Microelectronics, 2006. s. 206-211. ISBN 953-233-018-6.
    12. LIŠKA, Miloš a Petr HOLUB. Standard Definition Stereoscopic Video. In Internet2 IMT2006. 2006.
    13. HOLUB, Petr a Miloš LIŠKA. Uncompressed HD Technology. In Internet2 IMT2006. 2006.
    14. HLADKÁ, Eva a Petr HOLUB. Videokonference s vysokou kvalitou. Brno: Masarykova univerzita v Brně, 2006. 4 s. Zpravodaj ÚVT MU, 16, 3, 9-12. ISSN 1212-0901.

    2005

    1. HOLUB, Petr a Jan RADIL. Akademické lambda sítě u nás a ve světě. Brno: Masarykova univerzita v Brně, 2005. 7 s. Zpravodaj ÚVT MU, 15, 3, 6-12. ISSN 1212-0901.
    2. HEJTMÁNEK, Lukáš, Petr HOLUB a Luděk MATYSKA. Distribuované datové sklady a protokol IBP. Praha: DCD Publishing s.r.o., 2005. 7 s. Professional Computing, 2005/9, 15-21. ISSN 1214-5335.
    3. HOLUB, Petr. Grid Video Processing: Distributed Approach to Video Processing. Philadelphia, PA, USA: Internet2, 2005. I2 Fall 2005 Member Meeting.
    4. HOLUB, Petr. High-Definition Video at CESNET. Philadelphia, PA, USA: Internet2, 2005. I2 Fall 2005 Member Meeting.
    5. HOLUB, Petr a Miloš LIŠKA. High-Definition Video Transmissions for Medical Applications and Education. Technology and Health Care. Amsterdam (The Netherlands): IOS Press, 2005, roč. 13, č. 5, s. 398-400. ISSN 0928-7329.
    6. PROCHÁZKA, Michal, Tomáš REBOK a Petr HOLUB. Implementace P2P sítě zrcadel v prostředí JXTA. In Širokopásmové sítě a jejich aplikace. Olomouc: CVT UP Olomouc, 2005. s. 144-152. ISBN 80-244-1035-4.
    7. HOLUB, Petr a Miloš LIŠKA. Lecture Recording, Processing, Archiving, and Streaming. Atlanta, Internet2, USA: SURA/ViDe, 2005. SPR2005 - The 7th Annual SURA/ViDe Conference.
    8. HOLUB, Petr. Network and Grid Support for Multimedia Distribution and Processing. Brno: Masarykova univerzita v Brne, 2005. 117 s. Ph.D. Thesis.
    9. HOLUB, Petr, Eva HLADKÁ a Luděk MATYSKA. Scalability and Robustness of Virtual Multicast for Synchronous Multimedia Distribution. In Pascal Lorenz, Petre Dini. Lecture Notes in Computer Science 3421. Germany: Springer Berlin / Heidelberg, 2005. s. 876-883. ISBN 978-3-540-25338-9. doi:10.1007/978-3-540-31957-3_99.
    10. HOLUB, Petr a Eva HLADKÁ. Ubiquitous User-Empowered Networks of Active Elements. In TERENA Networking Conference 2005. Poznan, Poland: TERENA, 2005. s. 1-3.
    11. HOLUB, Petr, Tomáš REBOK a Miloš LIŠKA. Videokonferenční technologie a přenosy videa. Šumava: EurOpen 2005, 2005.
    12. HOLUB, Petr, Miloš LIŠKA, Jaroslav LEDVINKA a David KOVALSKÝ. Vysílání koncertu k výročí 50 let sboru Kantiléna. Brno: Masarykova univerzita v Brně, 2005. 5 s. Zpravodaj ÚVT MU, 16, 2, 16-20. ISSN 1212-0901.

    2004

    1. HEJTMÁNEK, Lukáš, Petr HOLUB a Luděk MATYSKA. DiDaS/LoCI Infrastructure for Distributed Video Processing. In Internet2 Fall Member Meeting 2004, Austin, Texas, USA. 2004.
    2. HOLUB, Petr. Distribuované kódování videa. Praha: ATLANTIDA Publishing s.r.o., 2004. 2 s. Pixel 94, 46-47. ISSN 1211-5401.
    3. HOLUB, Petr. Distribuované prostředí pro kódování multimédií. Brno: Masarykova univerzita v Brně, 2004. 4 s. Zpravodaj ÚVT MU, 14, 5, 6-9.
    4. HOLUB, Petr a Lukáš HEJTMÁNEK. Distributed Encoding Environment Based on Grids and IBP Infrastructure. In Selected Papers from TERENA Networking Conference 2004. TERENA, 2004. 10 s. ISBN 90-77559-04-3.
    5. HOLUB, Petr, Martin KUBA, Luděk MATYSKA a Miroslav RUDA. Grid Infrastructure Monitoring as Reliable Information Service. In Grid Computing, Second European AcrossGrids Conference, AxGrids 2004, Lecture Notes in Computer Science 3165. Berlin / Heidelberg: Springer-Verlag, 2004. s. 220-229. ISBN 3-540-22888-8.
    6. KRAJÍČEK, Ondřej a Petr HOLUB. GSIP - An Alternative Web Services Invocation Protocol. In Proceedings of the 10th International Conference of European University Information Systems (EUNIS). 1. vyd. 2004. 6 s. ISBN 961-6209-46-9.
    7. HOLUB, Petr. Lambda služby. Brno: Masarykova univerzita v Brně, 2004. 6 s. Zpravodaj ÚVT MU, 15, 2, 8-13.
    8. HLADKÁ, Eva, Petr HOLUB a Miloš LIŠKA. Modulární komunikační reflektor s DV přenosem. In Sborník konference Vysokorychlostní sítě 2004. Praha: Univerzita Karlova v Praze, 2004. s. 42-47.
    9. HOLUB, Petr. Notes on Scalable Models for Synchronous Multimedia Distribution. CESNET z.s.p.o., 2004. 9 s. Technical report 10/2004.
    10. HEJTMÁNEK, Lukáš a Petr HOLUB. Uniform Job Scheduling Model for Distributed Processing Environment with Distributed Storage. CESNET z.s.p.o., 2004. 13 s. Technical report 9/2004.
    11. HLADKÁ, Eva, Petr HOLUB a Jiří DENEMARK. User Empowered Virtual Multicast for Multimedia Communication. In Proccedings of 3rd International Conference on Networking. Colmar, France: University of Haute Alsace, 2004. 6 s. ISBN 0-86341-325-0.
    12. HLADKÁ, Eva, Petr HOLUB a Jiří DENEMARK. User-Empowered Programmable Network Support for Collaborative Environment. In Universal Multiservice Networks: Third European Conference, ECUMN 2004, Porto, Portugal, October 25-27, 2004. Proceedings. Heidelberg, Němeko: Lecture Notes in Computer Science 3262, Springer-Verlag Heidelberg, 2004. s. 367-376. ISBN 3-540-23551-5.

    2003

    1. HEJTMÁNEK, Lukáš a Petr HOLUB. IBP Deployment Tests and Integration with DiDaS Project. CESNET z.s.p.o., 2003. 22 s. Technical report 20/2003.
    2. MATYSKA, Luděk, Petr HOLUB a Eva HLADKÁ. Jak přednášet na dálku aneb virtuální přednáška v Koreji. Brno: Masarykova univerzita v Brně, 2003. 3 s. Zpravodaj ÚVT MU, 14, 1, 6-8. ISSN 1212-0901.
    3. HLADKÁ, Eva a Petr HOLUB. Jak se dělá divadlo na FI MU. Brno: Masarykova univerzita v Brně, 2003. 4 s. Zpravodaj ÚVT MU, 13, 5, 17-20.
    4. HLADKÁ, Eva, Petr HOLUB a Tomáš REBOK. Komunikace s technologií AccesGrid Point. In Širokopásmové sítě a jejich aplikace. Olomouc: CVT UP Olomouc, 2003. s. 65-69. ISBN 80-244-0642-X.
    5. KRAJÍČEK, Ondřej a Petr HOLUB. Portable and Efficient Replacement for Web Services Messaging Protocol. Budapest, Hungary: Microsoft Research, 2003. MSR Academic Conference.
    6. DENEMARK, Jiří, Petr HOLUB a Eva HLADKÁ. RAP - Reflector Administration Protocol. CESNET z.s.p.o., 2003. 32 s. Technical report 9/2003.
    7. REBOK, Tomáš a Petr HOLUB. Synchronizing RTP Packet Reflector. CESNET z.s.p.o., 2003. 5 s. Technical report 7/2003.

    2002

    1. HOLUB, Petr, Eva HLADKÁ a Michal KRSEK. Internetové vysílání workshopu Genetics after the Genome aneb "malý bobřík odvahy". Brno: Masarykova univerzita v Brně, 2002. 5 s. Zpravodaj ÚVT MU, 12, 5, 10-14. ISSN 1212-0901.
    2. HOLUB, Petr. IPsec interoperability tests with respect to deployment as "Last Mile" security solution. Praha: CESNET z.s.p.o., 2002. Technical report 2/2002.
    3. HOLUB, Petr. Jak na streamované video? Brno: Masarykova univerzita v Brně, 2002. 5 s. Zpravodaj ÚVT MU, 12, 3, 9-13. ISSN 1212-0901.
    4. HOLUB, Petr. Jemný úvod do (anti)virové problematiky. Brno: Masarykova univerzita v Brně, 2002. 6 s. Zpravodaj ÚVT MU, 12, 4, 9-14. ISSN 1212-0901.
    5. HLADKÁ, Eva a Petr HOLUB. Komunikace s technologií AccessGrid Point. Brno: Masarykova univerzita, 2002. 5 s. Zpravodaj ÚVT MU, 13, 2, 16-20. ISSN 1212-0901.
    6. HOLUB, Petr. Streamovaná multimédia. Brno: Masarykova univerzita v Brně, 2002. 3 s. Zpravodaj ÚVT MU, 12, 3, 7-9. ISSN 1212-0901.
    7. HLADKÁ, Eva, Petr HOLUB a Jiří DENEMARK. Teleconferencing Support for Small Groups. In TERENA Networking Conference 2002. 2002. 6 s.
    8. HLADKÁ, Eva a Petr HOLUB. Videokonferenční zrcadla. Praha: CESNET z.s.p.o., 2002. 1 s. Datagram, 1, 3, 4-4.
    9. HOLUB, Petr. XML Router Configuration Specifications and Architecture Document. Praha: CESNET z.s.p.o., 2002.
    10. HLADKÁ, Eva a Petr HOLUB. Zrcadla v počítačové síti. Brno: Masarykova univerzita v Brně, 2002. 4 s. Zpravodaj ÚVT MU, 12, 7-10. ISSN 1212-0901.

    2001

    1. HOLUB, Petr. DV Technology Overview And Video Camera Tests. CESNET z.s.p.o., 2001. 12 s. Technical report 12/2001.
    2. HOLUB, Petr. Encryption implementation for WBD. CESNET z.s.p.o., 2001. 3 s. Technical report 8/2001.
    3. HOLUB, Petr. PictureTel 550 H.323 Videoconferencing Tool in Windows 2000 Environment - Installation and Experiences. CESNET z.s.p.o., 2001. 13 s. Technical report 9/2001.

    1998

    1. HOLUB, Petr a Pavel KUBÁČEK. Schizoaromatický Hexaflurocyklotrifosfazen. In Pokroky v anorganické chemii. 1998.
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Zobrazeno: 27. 2. 2024 10:53