Výpis publikací

OPÁLENÝ, Filip, Pavol ULBRICH, Joan PLANAS IGLESIAS, Jan BYŠKA, Jan ŠTOURAČ, David BEDNÁŘ, Katarína FURMANOVÁ a Barbora KOZLÍKOVÁ. Visual Support for the Loop Grafting Workflow on Proteins. IEEE Transactions on Visualization and Computer Graphics. United States: IEEE Computer Society, 2025. ISSN 1077-2626.

POKOJNÁ, Hana, Barbora KOZLÍKOVÁ, Drew BERRY, Simone KRIGLSTEIN a Katarína FURMANOVÁ. Seeing the unseen: Comparison study of representation approaches for biochemical processes in education. PLoS ONE. 2023, roč. 18, č. 11, s. 1-27. ISSN 1932-6203. Dostupné z: https://dx.doi.org/10.1371/journal.pone.0293592.

ULBRICH, Pavol, Manuela WALDNER, Katarína FURMANOVÁ, Sérgio Manuel MARQUES, David BEDNÁŘ, Barbora KOZLÍKOVÁ a Jan BYŠKA. sMolBoxes: Dataflow Model for Molecular Dynamics Exploration. IEEE Transactions on Visualization and Computer Graphics. United States: IEEE Computer Society, 2023, roč. 29, č. 1, s. 581-590. ISSN 1077-2626. Dostupné z: https://dx.doi.org/10.1109/TVCG.2022.3209411.

HORÁK, Jiří, Katarína FURMANOVÁ, Barbora KOZLÍKOVÁ, Tomáš BRÁZDIL, Petr HOLUB, Martin KAČENGA, Matej GALLO, Rudolf NENUTIL, Jan BYŠKA a Vít RUSŇÁK. xOpat: eXplainable Open Pathology Analysis Tool. COMPUTER GRAPHICS FORUM. England: Wiley, 2023, roč. 42, č. 3, s. 63-73. ISSN 0167-7055. Dostupné z: https://dx.doi.org/10.1111/cgf.14812.

BÖRÖNDY, Ádám, Katarína FURMANOVÁ a Renata Georgia RAIDOU. Understanding the impact of statistical and machine learning choices on predictive models for radiotherapy. Online. In Renata G. Raidou, Björn Sommer, Torsten W. Kuhlen, Michael Krone, Thomas Schultz, Hsiang-Yun Wu. Eurographics Workshop on Visual Computing for Biology and Medicine. Neuveden: The Eurographics Association, 2022, s. 65-69. ISBN 978-3-03868-177-9. Dostupné z: https://dx.doi.org/10.2312/vcbm.20221188.

FURMANOVÁ, Katarína, Ludvig P MUREN, Oscar CASARES-MAGAZ, Vitali MOISEENKO, John P EINCK, Sara PILSKOG a Renata G RAIDOU. PREVIS: Predictive visual analytics of anatomical variability for radiotherapy decision support. Computers & Graphics. Elsevier Science, 2021, roč. 97, April, s. 126-138. ISSN 0097-8493. Dostupné z: https://dx.doi.org/10.1016/j.cag.2021.04.010.

REBOK, Tomáš, Michal BATKO, Milan ČERMÁK, Martin DRAŠAR, Jarešová MIROSLAVA, Barbora KOZLÍKOVÁ, Kristína ZÁKOPČANOVÁ, Pavel ZEZULA, Katarína FURMANOVÁ, Marko ŘEHÁČEK, Jozef BÁTRNA a Daniel PLAKINGER. ANALYZA – Vizualizační komponenta – Visilant. 2020.

FURMANOVÁ, Katarína, Ondřej VÁVRA, Barbora KOZLÍKOVÁ, Jiří DAMBORSKÝ, Vojtěch VONÁSEK, David BEDNÁŘ a Jan BYŠKA. DockVis: Visual Analysis of Molecular Docking Trajectories. Computer Graphics Forum. Wiley-Blackwell, 2020, roč. 39, č. 6, s. 452-464. ISSN 0167-7055. Dostupné z: https://dx.doi.org/10.1111/cgf.14048.

RAIDOU, Renata Georgia, Katarína FURMANOVÁ, Nicolas GROSSMANN, Oscar CASARES-MAGAZ, Vitali MOISEENKO, John P EINCK, Eduard GRÖLLER a Ludvig P MUREN. Lessons learnt from developing visual analytics applications for adaptive prostate cancer radiotherapy. Online. In Christina Gillmann, Michael Krone, Guido Reina, Thomas Wischgoll. VisGap - The Gap between Visualization Research and Visualization Software. Norrköping, Sweden: The Eurographics Association, 2020, s. 51-58. ISBN 978-3-03868-125-0. Dostupné z: https://dx.doi.org/10.2312/visgap.20201110.

FURMANOVÁ, Katarína, Adam JURČÍK, Barbora KOZLÍKOVÁ, Helwig HAUSER a Jan BYŠKA. Multiscale Visual Drilldown for the Analysis of Large Ensembles of Multi-Body Protein Complexes. IEEE Transactions on Visualization and Computer Graphics. IEEE, 2020, roč. 26, č. 1, s. 843-852. ISSN 1077-2626. Dostupné z: https://dx.doi.org/10.1109/TVCG.2019.2934333.

FURMANOVÁ, Katarína, Samuel GRATZL, Holger STITZ, Thomas ZICHNER, Miroslava JAREŠOVÁ, Alexander LEX a Marc STREIT. Taggle: Combining Overview and Details in Tabular Data Visualizations. Information Visualization. 2020, roč. 19, č. 2, s. 114-136. ISSN 1473-8716. Dostupné z: https://dx.doi.org/10.1177/1473871619878085.

FURMANOVÁ, Katarína, Renata G RAIDOU, Nicolas GROSSMANN, Oscar CASARES-MAGAZ, Vitali MOISEENKO, John P EINCK a Ludvig P MUREN. Using multiple planning scans to predict organ shape variability during RT for prostate cancer. In ESTRO 2020. 2020.

FURMANOVÁ, Katarína, Nicolas GROSSMANN, Ludvig P. MUREN, Oscar CASARES-MAGAZ, Vitali MOISEENKO, John P. EINCK, Eduard M. GRÖLLER a Renata G. RAIDOU. VAPOR: Visual Analytics for the Exploration of Pelvic Organ Variability in Radiotherapy. Computers & Graphics. 2020, roč. 91, October 2020, s. 25-38. ISSN 0097-8493. Dostupné z: https://dx.doi.org/10.1016/j.cag.2020.07.001.

BYŠKA, Jan, Adam JURČÍK, Katarína FURMANOVÁ, Barbora KOZLÍKOVÁ a Jan PALEČEK. Visual Analysis of Protein–Protein Interaction Docking Models Using COZOID Tool. In Stefan Canzar, Francisca Rojas Ringeling. Protein-Protein Interaction Networks. 1. vyd. New York, NY: Humana Press Inc, 2020, s. 81-94. Methods in Molecular Biology, vol. 2074. ISBN 978-1-4939-9872-2. Dostupné z: https://dx.doi.org/10.1007/978-1-4939-9873-9_7.

FURMANOVÁ, Katarína, Barbora KOZLÍKOVÁ, Vojtěch VONÁSEK a Jan BYŠKA. DockVis: Visual Analysis of Molecular Docking Data. In Kozlíková, Barbora and Linsen, Lars and Vázquez, Pere-Pau and Lawonn, Kai and Raidou, Renata Georgia. Eurographics Workshop on Visual Computing for Biology and Medicine. Brno: The Eurographics Association, 2019, s. 113-122. ISBN 978-3-03868-081-9. Dostupné z: https://dx.doi.org/10.2312/vcbm.20191238.

VONÁSEK, Vojtěch, Adam JURČÍK, Katarína FURMANOVÁ a Barbora KOZLÍKOVÁ. Sampling-based Motion Planning for Tracking Evolution of Dynamic Tunnels in Molecular Dynamics Simulations. Journal of Intelligent & Robotic Systems. 2019, roč. 93, 3-4, s. 763-785. ISSN 0921-0296. Dostupné z: https://dx.doi.org/10.1007/s10846-018-0877-6.

JURČÍK, Adam, Katarína FURMANOVÁ, Jan BYŠKA, Vojtěch VONÁSEK, Ondřej VÁVRA, Pavol ULBRICH, Helwig HAUSER a Barbora KOZLÍKOVÁ. Visual Analysis of Ligand Trajectories in Molecular Dynamics. Online. In IEEE Pacific Visualization Symposium 2019. Bangkok, Thailand: IEEE, 2019, s. 212-221. ISBN 978-1-5386-9226-4. Dostupné z: https://dx.doi.org/10.1109/PacificVis.2019.00032.

JURČÍK, Adam, David BEDNÁŘ, Jan BYŠKA, Sérgio Manuel MARQUES, Katarína FURMANOVÁ, Lukáš DANIEL, Piia Pauliina KOKKONEN, Jan BREZOVSKÝ, Ondřej STRNAD, Jan ŠTOURAČ, Antonín PAVELKA, Martin MANAK, Jiří DAMBORSKÝ a Barbora KOZLÍKOVÁ. CAVER Analyst 2.0: Analysis and Visualization of Channels and Tunnels in Protein Structures and Molecular Dynamics Trajectories. Bioinformatics. 2018, roč. 34, č. 20, s. 3586-3588. ISSN 1367-4803. Dostupné z: https://dx.doi.org/10.1093/bioinformatics/bty386.

FURMANOVÁ, Katarína, Jan BYŠKA, Eduard M. GRÖLLER, Ivan VIOLA, Jan PALEČEK a Barbora KOZLÍKOVÁ. COZOID: COntact ZOne IDentifier for visual analysis of protein-protein interactions. BMC Bioinformatics. 2018, roč. 19, APR, s. 1-17. ISSN 1471-2105. Dostupné z: https://dx.doi.org/10.1186/s12859-018-2113-6.

FURMANOVÁ, Katarína, Petra URBANOVÁ a Barbora KOZLÍKOVÁ. AnthroVis: Visual Analysis of 3D Mesh Ensembles for Forensic Anthropology. In Vítezslav Beran, Pavel Zemcík, Ivan Viola, Jirí Bittner, Jaroslav Rozman. Proceedings of the 33rd Spring Conference on Computer Graphics. Brno, Czech Republic: ACM, 2017, s. 171-179. ISBN 978-1-4503-5107-2. Dostupné z: https://dx.doi.org/10.1145/3154353.3154363.

FURMANOVÁ, Katarína, Miroslava JAREŠOVÁ, Jan BYŠKA, Adam JURČÍK, Julius PARULEK, Helwig HAUSER a Barbora KOZLÍKOVÁ. Interactive Exploration of Ligand Transportation through Protein Tunnels. BMC Bioinformatics. BioMed Central, 2017, roč. 18, č. 22, s. 1-16. ISSN 1471-2105. Dostupné z: https://dx.doi.org/10.1186/s12859-016-1448-0.

GALVÁNEK, Marek, Katarína FURMANOVÁ, Igor CHALÁS a Jiří SOCHOR. Automated facial landmark detection, comparison and visualization. In Joaquim Jorge, Luis Paulo Santos, Roman Ďurikovič. Proceedings of the 31st Spring Conference on Computer Graphics. Bratislava, Slovakia: ACM, 2015, s. 7-14. ISBN 978-1-4503-3693-2. Dostupné z: https://dx.doi.org/10.1145/2788539.2788540.

CHALÁS, Igor, Petra URBANOVÁ, Mikoláš JURDA, Zuzana FERKOVÁ, Katarína FURMANOVÁ, Barbora KOZLÍKOVÁ a Jiří SOCHOR. FIDENTIS Analyst 1.3.2. 2015.

CHALÁS, Igor, Zuzana FERKOVÁ, Katarína FURMANOVÁ, Jiří SOCHOR a Barbora KOZLÍKOVÁ. Generation of variable human faces from 3D scan dataset. In In Proceedings of the 7th International Conference on Games and Virtual Worlds for Serious Applications. Skovde, Sweden: IEEE Computer Society, 2015, s. 38-45. ISBN 978-1-4799-8102-1. Dostupné z: https://dx.doi.org/10.1109/VS-GAMES.2015.7295777.

FURMANOVÁ, Katarína. Visualization Techniques for 3D Facial Comparison. In Hans-Jörg Schulz, Bodo Urban, Uwe Freiherr von Lukas. Proceedings of the International Summer School on Visual Computing 2015. Stuttgart: Fraunhofer Verlag, 2015, s. 23-33. ISBN 978-3-8396-0960-6.