Publication Records

VAŘECHA, Miroslav, Michal ZIMMERMANN, Jana AMRICHOVÁ, Vladimír ULMAN, Pavel MATULA and Michal KOZUBEK. Prediction of localization and interactions of apoptotic proteins. Journal of Biomedical Science. BioMed website: BioMed Central, London, England, 2009, vol. 16, No 59, p. 1-14. ISSN 1021-7770.

MATULA, Petr, Anil KUMAR, Ilka WÖRZ, Holger ERFLE, Ralf BARTENSCHLAGER, Roland EILS and Karl ROHR. Single-cell-based image analysis of high-throughput cell array screens for quantification of viral infection. Cytometry Part A. UNITED STATES: John Wiley & Sons, Inc., 2009, 75A, No 4, p. 309-318. ISSN 1552-4922.

ZIMMERMANN, Michal, Miroslav VAŘECHA, Jana AMRICHOVÁ, Vladimír ULMAN, Pavel MATULA and Michal KOZUBEK. Bioinformatic prediction, molecular modelling and image analysis of localization and interactions of apoptotic proteins endonuclease G, AIF, and AMID. In Apoptosis World 2008. 2008.

JANOUŠOVÁ, Eva and Daniel SCHWARZ. Comparison Of Brain Tissue Classification Algorithms With The Use Of Multimodal Efficiency Measure. In Analysis of Biomedical Signals and Images - Proceedings of 19th Biennal International Eurasip Conference BIOSIGNAL 2008. Brno: VUTIUM Press, 2008, p. 1-4. ISBN 978-80-214-3612-1.

VAŘECHA, Miroslav, Jana AMRICHOVÁ, Michal ZIMMERMANN, Vladimír ULMAN and Michal KOZUBEK. Image analysis of localization and translocation of apoptotic proteins in living cells. In European Light Microscopy Initiative. 2008.

VAŘECHA, Miroslav, Michal ZIMMERMANN, Jana AMRICHOVÁ, Vladimír ULMAN and Michal KOZUBEK. Interactions of apoptotic proteins AIF and endonuclease G analyzed by bioinformatic predictions, molecular docking, and fluorescent microscopy. In 16th Euroconference on Apoptosis an 5th Swiss Apoptosis Meeting. 2008.

VAŘECHA, Miroslav, Pavel MATULA and Michal KOZUBEK. New approaches to automated cell image acquisition and analysis using fluorescence microscopy. In XIX. Biologické Dny - International Symposium "The Functional Organization of the Cell Nucleus". 2008. ISBN 978-80-7399-545-4.

SCHWARZ, Daniel and Tomáš KAŠPÁREK. Spatial Deformation Model With The Use Of Wavelet Thresholding For Nonlinear Multimodal Registration. In Analysis of Biomedical Signals and Images - Proceedings of 19th Biennal International Eurasip Conference BIOSIGNAL 2008. Brno: VUTIUM Press, 2008, p. 1-3. ISBN 978-80-214-3612-1.

STEJSKAL, Stanislav, Pavel MATULA, Irena KOUTNÁ, Ondřej DANĚK, Martin MAŠKA and Michal KOZUBEK. The Use of RNA Polymerase II in Epigenetic Analysis. In 3rd EFS Functional Genomics Conference 2008. 2008.

KOZUBEK, Michal. Automation of biomedical image acquisition and analysis in optical microscopy. In Seminar of the Centre for Image Analysis. 2007.

VAŘECHA, Miroslav, Jana AMRICHOVÁ, Michal ZIMMERMANN, Vladimír ULMAN, Emilie LUKÁŠOVÁ and Michal KOZUBEK. Bioinformatic and image analyses of cellular localization of apoptotic proteins endonuclease G, AIF, and AMID. In Symposium "Structure and Function of Cell Nucleus". 2007.

SCHWARZ, Daniel and Tomáš KAŠPÁREK. Brain Tissue Classification with Automated Generation of Training Data Improved by Deformable Registration. W.G.Kropatsch, M. Kampel, A. Hanbury (Eds.). In LECTURE NOTES IN COMPUTER SCIENCE. Berlin, Heidelberg: Springer-Verlag, 2007, p. 301-308. ISBN 978-3-540-74271-5.

SKALNÍKOVÁ, Magdalena, Eva BÁRTOVÁ, Vladimír ULMAN, Petr MATULA, David SVOBODA, Andrea HARNIČAROVÁ, Michal KOZUBEK and Stanislav KOZUBEK. Distinct patterns of histone methylation and acetylation in human interphase nuclei. Physiological Research. Prague: Czech Academy of Sciences, 2007, vol. 56, No 6, p. 797-806. ISSN 0862-8408.

VAŘECHA, Miroslav, Jana AMRICHOVÁ, Michal ZIMMERMANN, Vladimír ULMAN, Marek KAŠÍK and Michal KOZUBEK. Fluorescent microscopy of living cells. In Analytical Cytometry IV: Book of Abstracts. 2007. ISBN 978-80-239-9591-6.

ADAM, Vojtěch, JIří BALOUN and Václav DIOPAN. Vyuziti analyzy obrazu, nuklearni magneticke rezonance a Brdickovy reakce pro studium vlivu tezkych kovu na embryonalni smrkove kultury (Utilization of image analysis, nuclear magnetic resonance and Brdička reaction for heavy metal effects to embryogenic spruce culture studying). In Chemické zvesti. Slovenská republika: Institute of Chemistry Slovak Acedemy of Science, Bratislava, Slovak Chemical Society, Bratislava, 2007, p. 167-169. ISBN nebylo přiděleno.

KOZUBEK, Michal. Automated analysis of multi-dimensional biomedical image data acquired using optical microscopy. Ed. R. Lechnerová, I. Saxl, V. Beneš. In Proceedings of the 6th International Conference on Stereology, Spatial Statistics and Stochastic Geometry. Prague: Union of Czech Mathematicians and Physicists, 2006, p. 465-476. ISBN 80-7015-037-8.

KOZUBEK, Michal. Automated analysis of multi-dimensional biomedical image data acquired using optical microscopy. In 6th International Conference on Stereology, Spatial Statistics and Stochastic Geometry. 2006.

ULMAN, Vladimír. Automatic Detection of Histones on Chromosome X in Images of Cell Nuclei. Clinician and Technology (Lékař a technika). Praha: Czech Medical Association J.E.Purkyne, 2006, roč. 36, No 2, p. 160-164. ISSN 0301-5491.

VAŘECHA, Miroslav, Jana AMRICHOVÁ, Michal ZIMMERMANN, Vladimír ULMAN, Pavel MATULA, Petr MATULA and Michal KOZUBEK. Single-cell image analysis of cellular localization and colocalization of endonuclease G, AIF and AMID in living cells. In Book of Abstracts for 14th Euroconference on Apoptosis. 2006.

SVOBODA, David, Ian WILLIAMS, Nicholas BOWRING and Elizabeth GUEST. Statistical techniques for edge detection in histological images. In First International Conference on Computer Vision Theory and Applications. Portugalsko: INSTICC Press, 2006, p. 457-462. ISBN 972-8865-40-6.

BÁBEK, Ondrej. Thermal maturity of the Palaeozoic Moravo-Silesian Basin: a digital image analysis approach to conodont colour alteration index (CAI). Geophysical Research Abstracts. European Geosciences Union, 2006, vol. 8, No 1, p. EGU06-A-04037, 1 pp. ISSN 1029-7006.

KOZUBEK, Michal, Pavel MATULA, Petr MATULA and David SVOBODA. Analysis of biomedical image data acquired using optical microscopy. In 1st International Summer School on Computational Biology. 2005.

KOZUBEK, Michal, Pavel MATULA, Petr MATULA and David SVOBODA. Analysis of biomedical image data acquired using optical microscopy. In DUŠEK, Ladislav, Jiří HŘEBÍČEK and Jiří JARKOVSKÝ. Proceedings of the 1st International Summer School on Computational Biology. Brno: Masaryk University, 2005, p. 21-28. ISBN 80-210-3907-8.

KOZUBEK, Michal, Pavel MATULA, Petr MATULA and David SVOBODA. Analysis of biomedical image data acquired using optical microscopy. In Prague Post Genome Technology Workshop. Prague, Czech Republic: Czech Pattern Recognition Society, 2005, p. 24-27. ISBN 80-01-03239-6.

NOVY, Jindrich, Pavlina BECVAROVA, Jirina SKORPIKOVA, Vojtech MORNSTEIN and Roman JANISCH. Discrete Fourier transform-based analysis of HeLa cell microtubules after ultrasonic exposure. Microscopy Reasearch Technique. Wiley-Liss, 2005, vol. 68, No 1, p. 1-5. ISSN 1059-910X.

URBANOVÁ, Petra and Vladimír NOVOTNÝ. Distinguishing between Human and Non-human bones: Histometric metod for forensic antropology. Anthropologie. 2005, XLIII, No 1, p. 77-85, 8 pp. ISSN 0323-1119.

KOZUBEK, Michal, Petr MATULA, Pavel MATULA, David SVOBODA, Jan HUBENÝ and Petr KRONTORÁD. Automated image analysis in fluorescence microscopy: From isolated cells to tissues and microarray images. In Biophysics of the Genome. First Edition 2004. Brno: Masaryk University, 2004, p. 44-46. ISBN 80-210-3560-9.

MORNSTEIN, Vojtěch, Pavlína BEČVÁŘOVÁ, Jindřich NOVÝ, Jiřina ŠKORPÍKOVÁ and Roman JANISCH. How to evaluate the cytoskeletal response to the action of ultrasound? Liječnički Vjesnik. Zagreb: Hrvatski Liječnički Zbor, 2004, vol. 126, Supp. 2, p. 168-168. ISSN 1330-4917.

SULOVSKÝ, Petr, Theodor STANĚK and Václav VÁVRA. Modal analysis of clinker: solutions and constraints. Berichte der Deutschen Mineralogischen Gesellschaft - Beihefte zum European Journal of Mineralogy. Stuttgart: Nägele u. Obermiller, 2004, vol. 16, No 1, p. 138-138. ISSN 0935-123X.

PETŘEK, Jiří, Helena VLAŠÍNOVÁ, Ladislav HAVEL, Vojtěch ADAM, Petr BABULA, Jan VÍTEČEK, David POTĚŠIL and René KIZEK. Organizace embryí ve shlucích raných somatických embryí smrku ztepilého (Picea abies (L.) Karst.). (Organization of embryos in clusters of early somatic embryos of Norway spruce (Picea abies /L./ Karst.)). In MendelNet04 Agro. Brno: Mendelova zemědělská a lesnická univerzita v Brně, 2004, p. 104-109, 124 pp. ISBN 80-7157-813-4.

DUBOVÝ, Petr. POKROKY V ZÁKLADNÍ, APLIKOVANÉ A DIAGNOSTICKÉ HISTOCHEMII (Progress in Basic, Applied, and Diagnostic Histochemistry). 2004.

MATULA, Pavel, Michal KOZUBEK, Stanislav KOZUBEK and Vladan ONDŘEJ. Rapid Image Acquisition of Living Cells and its Limits. In Biophysics of the Genome. Brno, Czech Republic: Masaryk University, 2004, p. 58-61. ISBN 80-210-3560-9.

BRABEC, Kamil. Uchovávání obrazových dat (Archiving of image data). In XXVII. Dny lékařské biofyziky. Hradec Králové, 2004.

KOZUBEK, Michal, Petr MATULA, Pavel MATULA and Petr MEJZLÍK. A network solution for high-resolution image cytometry. In Biophysics of the Genome. Brno: Masaryk University, 2003, p. 30-36. ISBN 80-210-3226-X.

NOVÝ, Jindřich, Jan TOMÁŠ and Roman JANISCH. Adaptive methods of cytoskeleton data analysis obtained by confocal microscopy. In IX. Cytoskeletální klub. Brno: Neuveden, 2003, p. 6-6.

MATULA, Petr, Magdalena SKALNÍKOVÁ, Michal KOZUBEK and Michael HAUSMANN. Improving measurement precision using automated micro-axial tomography. In Biophysics of the Genome. Brno: Masaryk University, 2003, p. 51-53. ISBN 80-210-3226-X.

SVOBODA, David and Pavel MATULA. Tissue image reconstruction: Localization of nuclei markers and segmentation based on deformable models. In Biophysics of the Genome. Brno: Masaryk University, 2003, p. 67-70. ISBN 80-210-3226-X.

MATULA, Pavel and David SVOBODA. 3D Object reconstructions in image cytometry. In Biophysics of the Genome. Brno: Masaryk University, 2003, p. 49-50. ISBN 80-210-3226-X.

DUBOVÝ, Petr, Ivana SVÍŽENSKÁ and Ilona KLUSÁKOVÁ. Computer-assisted quantitative immunohistochemistry of the extracellular matrix in the dorsal and ventral spinal roots with the use of a Lucia software. Acta histochemica. Jena: Urban&Fischer Verlag, 2002, vol. 104, No 4, p. 371-374. ISSN 0065-1281.

MATULA, Petr, Pavel MATULA, Petr MEJZLÍK and Michal KOZUBEK. FISH 3.0 client-server system for 3D optical microscope data storage and analysis. In Biophysics of the genome and its interactions. Brno: Masaryk University, 2002, p. 77-79. ISBN 80-210-2853-X.

DUBOVÝ, Petr, Ilona KLUSÁKOVÁ and Ivana SVÍŽENSKÁ. Quantitative immunofluorescence for BDNF, NGF, and NT-3 in Schwann cells of the spinal roots and peripheral nerve. In Progress in Basic, Applied, and Diagnostic Histochemistry. Brno: Masarykova univerzita v Brně, 2002, p. 16. ISBN 80-210-2998-6.

VYSTRČILOVÁ, Michaela and Vladimír NOVOTNÝ. Využití programu pro analýzu obrazu LUCIA při stanovení věku (The use of program for the image analysis LUCIA in the estimation of age at death). Ceská antropologie. Olomouc, 2002, vol. 52, p. 59-61. ISSN 0862-5085.

KOZUBEK, Michal, Stanislav KOZUBEK, Emilie LUKÁŠOVÁ, Eva BÁRTOVÁ, Magdalena SKALNÍKOVÁ, Pavel MATULA, Petr MATULA, Pavla JIRSOVÁ, Alena GAŇOVÁ and Irena KOUTNÁ. Combined confocal and wide-field high-resolution cytometry of FISH-stained cells. Cytometry. New York: International Society for Analytical Cyt, 2001, vol. 45, No 1, p. 1-12. ISSN 0196-4763.

KOZUBEK, Michal, Stanislav KOZUBEK, Emilie LUKÁŠOVÁ, Eva BÁRTOVÁ, Magdalena SKALNÍKOVÁ, Pavel MATULA, Petr MATULA, Pavla JIRSOVÁ, Alena GAŇOVÁ and Irena KOUTNÁ. Advances in high-resolution cytometry of FISH dots in interphase cell nuclei. In Cytokinematics 2000. 2000.

KOZUBEK, Michal, Stanislav KOZUBEK, Emilie LUKÁŠOVÁ, Eva BÁRTOVÁ, Magdalena SKALNÍKOVÁ, Pavel MATULA, Petr MATULA, Pavla JIRSOVÁ, Alena GAŇOVÁ and Irena KOUTNÁ. Advances in high-resolution cytometry of FISH dots in interphase cell nuclei. In The XX Congress of the International Society for Analytical Cytology. 2000.

KOZUBEK, Michal and Petr MATULA. An efficient algorithm for measurement and correction of chromatic aberrations in fluorescence microscopy. Journal of Microscopy. Oxford: Blackwell Science, 2000, vol. 200, No 3, p. 206-217. ISSN 0022-2720.

KOZUBEK, Stanislav, Emilie LUKÁŠOVÁ, Jana AMRICHOVÁ, Michal KOZUBEK, Andrea LIŠKOVÁ and Jana ŠLOTOVÁ. Influence of cell fixation on chromatin topography. Analytical Biochemistry. San Diego: Academic Press, 2000, vol. 282, No 1, p. 29-38. ISSN 0003-2697.

KOTOUČKOVÁ, Ludmila, Lucie POKLUDOVÁ and Miroslav NĚMEC. Možnosti zkvalitnění výuky mikrobiologie využitím software pro analýzu obrazu (Possibilities of Innovating of Lessons from Microbiology by Use of Image Analysis Software). In Sborník přednášek a programů ze 7. ročníku konference Pedagogický software 2000. 1st ed. České Budějovice: Scientific Pedagogical Publishing, 2000, p. 47. ISBN 80-85645-40-8.

SKALNÍKOVÁ, Magdalena, Stanislav KOZUBEK, Emilie LUKÁŠOVÁ, Eva BÁRTOVÁ, Pavla JIRSOVÁ, Alena CAFOURKOVÁ, Irena KOUTNÁ and Michal KOZUBEK. Spatial arrangement of genes, centromeres and chromosomes in human blood cell nuclei and its changes during the cell cycle, differentiation and after irradiation. Chromosome Research. Dordrecht: Kluwer Academic, 2000, vol. 8, No 6, p. 487-499. ISSN 0967-3849.

KOZUBEK, Michal, Stanislav KOZUBEK, Emilie LUKÁŠOVÁ, Andrea MAREČKOVÁ, Eva BÁRTOVÁ, Magdalena SKALNÍKOVÁ and Adriana JERGOVÁ. High-resolution cytometry of FISH dots in interphase cell nuclei. Cytometry. New York: International Society for Analytical Cyt, 1999, vol. 36, No 4, p. 279-293. ISSN 0196-4763.

KOZUBEK, Michal. High-resolution cytometry : Hardware approaches, image analysis techniques and applications. Brno: Masaryk University, 1998, 122 pp.

KOZUBEK, Michal, Stanislav KOZUBEK, Emilie LUKÁŠOVÁ, Jana AMRICHOVÁ, Leonard RÝZNAR and Andrea LIŠKOVÁ. Semi-automated FISH-stained interphase nuclei analysis in human genome studies. edited by J.Slavík. In Fluorescence Microscopy and Fluorescent Probes. vol.2. New York: Plenum, 1998, p. 173-179. ISBN 0-306-46021-1.

DUBOVÝ, Petr, Radim JANČÁLEK and Pavel HANINEC. Fasciculation of the motor axons in the medial and lateral roots of the human median nerve. Scripta medica. Brno: Lékařská fakulta Masarykovy univerzity, 1997, vol. 70, 2-3, p. 123-130. ISSN 1211-3395.

KOZUBEK, Michal. Analýza obrazu pořízeného při fluorescenční in situ hybridizaci (Analysis of images obtained using fluorescence in situ hybridization). Brno: Masarykova univerzita, 1995, 64 pp.