Výpis publikací

CZYREK, Aleksandra Anna; Karolina BARAN; Eva HRUBÁ; Aneta HORACKOVA; Veronika BOSÁKOVÁ; Julia CHUDZIAN; Bohumil FAFÍLEK; Veronika LASKOVA; Veronika STEPANKOVA; David BEDNÁŘ; Kelly KARL; Petr KASPAREK; Michaela BOSÁKOVÁ; Michal KILLINGER; Tereza SZOTKOWSKA; Jan PROCHAZKA; Jennifer T ZIEBA; Gustavo RICO LLANOS; Jan FRIČ; Stefan HADZIC; Edma LOKU; Magdalena WUJAK; Kateřina SVOZILOVÁ; Michaela STROBLOVÁ; Radislav SEDLACEK; Kalina HRISTOVA; Deborah KRAKOW; Jan KUBOVCIAK; Mathys DELATTRE; Rafal BARTOSZEWSKI; Marcela BUCHTOVÁ; Daniel KROWARSCH; Radka CHALOUPKOVÁ; Malgorzata ZAKRZEWSKA a Pavel KREJČÍ. Increased thermal stability of FGF10 leads to ectopic signaling during development. Cellular and molecular life sciences. BASEL: SPRINGER BASEL AG, 2025, roč. 82, č. 1, s. 1-24. ISSN 1420-682X. Dostupné z: https://doi.org/10.1007/s00018-025-05681-1.

DVOŘÁK, Petr; Pavel KREJČÍ; Lukáš BÁLEK; Lívia EISELLEOVÁ; Žaneta KONEČNÁ; Pavel DVOŘÁK; David BEDNÁŘ; Jan BREZOVSKÝ; Eva ŠEBESTOVÁ; Radka CHALOUPKOVÁ; Veronika ŠTĚPÁNKOVÁ; Pavel VAŇÁČEK; Zbyněk PROKOP; Jiří DAMBORSKÝ a Michaela BOSÁKOVÁ. POLIPEPTÍDEO TERMOESTÁVEL E MEIO DE CULTURA. 2025. Patent. Číslo: BR 112018010676-3. Vydavatel: Instituto Nacional da Propriedade Industrial. Místo vydání: Rio de Janeiro. Název vlastníka: Masarykova univerzita; Enantis s.r.o. Datum registrace: 3. 10. 2016. Datum přijetí: 2. 12. 2025.

DE LA BOURDONNAYE, Gabin; Tereza GHAZALOVÁ; Petr FOJTÍK; Katerina KUTALKOVA; David BEDNÁŘ; Jiří DAMBORSKÝ; Vladimír ROTREKL; Veronika STEPANKOVA a Radka CHALOUPKOVÁ. Computer-aided engineering of stabilized fibroblast growth factor 21. Computational and Structural Biotechnology Journal. Elsevier, 2024, roč. 23, December 2024, s. 942-951. ISSN 2001-0370. Dostupné z: https://doi.org/10.1016/j.csbj.2024.02.001.

KNOZ, Martin; Jakub HOLOUBEK; Břetislav LIPOVÝ; Martin FALDYNA; Radka CHALOUPKOVÁ; Veronika PAVLINAKOVA; Johana MUCHOVA; Jana BRTNIKOVA; Jiří JARKOVSKÝ a Lucy VOJTOVA. Evaluation of viscoelastic parameters and photo-based assessment of newly developed dermal substitutes modified with thermostabilized fibroblast growth factor 2. Burns. London: ELSEVIER SCI LTD, 2024, roč. 50, č. 6, s. 1586-1596. ISSN 0305-4179. Dostupné z: https://doi.org/10.1016/j.burns.2024.03.020.

DE LA BOURDONNAYE, Gabin; Martin MAREK; Tereza GHAZALOVÁ; Jiří DAMBORSKÝ; Petr PACHL; Jiri BRYNDA; Veronika ŠTĚPÁNKOVÁ a Radka CHALOUPKOVÁ. Structural analysis of the stable form of fibroblast growth factor 2 - FGF2-STAB. Journal of Structural Biology: X. AMSTERDAM: ELSEVIER, 2024, roč. 10, December 2024, s. 1-8. ISSN 2590-1524. Dostupné z: https://doi.org/10.1016/j.yjsbx.2024.100112.

VILÍM, Jan; Tereza GHAZALOVÁ; Eliška PETULOVÁ; Aneta HORACKOVA; Veronika STEPANKOVA; Radka CHALOUPKOVÁ; David BEDNÁŘ; Jiří DAMBORSKÝ a Zbyněk PROKOP. Computer-assisted stabilization of fibroblast growth factor FGF-18. Computational and Structural Biotechnology Journal. AMSTERDAM: Elsevier, 2023, roč. 21, October 2023, s. 5144-5152. ISSN 2001-0370. Dostupné z: https://doi.org/10.1016/j.csbj.2023.10.009.

CHMELOVÁ, Klaudia; Tadeja GAO; Martin POLÁK; Andrea SMITH; Tristan I. CROLL; Tanvir SHAIKH; Jana ŠKAŘUPOVÁ; Radka CHALOUPKOVÁ; Kay DIEDERICHS; Randy J. READ; Jiří DAMBORSKÝ; Jiří NOVÁČEK a Martin MAREK. Multimeric structure of a subfamily III haloalkane dehalogenase-like enzyme solved by combination of cryo-EM and x-ray crystallography. Protein Science. Hoboken: Wiley, 2023, roč. 32, č. 10, s. 1-22. ISSN 0961-8368. Dostupné z: https://doi.org/10.1002/pro.4751.

LIPOVÝ, Břetislav; Martin KNOZ; Jakub HOLOUBEK; Eva HORÁLKOVÁ; Veronika PAVLIŇÁKOVÁ; Martin FALDYNA; Edita JEKLOVÁ; Radka CHALOUPKOVÁ; Zdeněk PAVLOVSKÝ; Irena KOUTNÁ a Lucy VOJTOVÁ. Stable Fibroblast Growth Factor 2 and its role in research from dermal regeneration to total skin substitute. In Recent Advances in Surgery and Burns, Kızılcahamam, Ankara, Turkey. 2023.

HOLOUBEK, Jakub; Břetislav LIPOVÝ; Martin KNOZ; Tomáš KEMPNÝ; Radka CHALOUPKOVÁ; Jiří DAMBORSKÝ a Lucy VOJTOVÁ. The future for the application of fibroblast growth factor 2 in modern wound healing. BURNS. OXFORD: ELSEVIER SCI LTD, 2023, roč. 49, č. 2, s. 484-486. ISSN 0305-4179. Dostupné z: https://doi.org/10.1016/j.burns.2022.10.007.

DVOŘÁK, Petr; Pavel KREJČÍ; Lukáš BÁLEK; Lívia EISELLEOVÁ; Žaneta KONEČNÁ; Pavel DVOŘÁK; David BEDNÁŘ; Jan BREZOVSKÝ; Eva ŠEBESTOVÁ; Radka CHALOUPKOVÁ; Veronika ŠTĚPÁNKOVÁ; Pavel VAŇÁČEK; Zbyněk PROKOP; Jiří DAMBORSKÝ a Michaela BOSÁKOVÁ. Thermostable FGF2 polypeptide, use thereof. 2023. Patent. Číslo: US11746135B2. Vydavatel: United States Patent and Trademark Office. Místo vydání: Alexandria (Virginie). Název vlastníka: Masarykova univerzita; Enantis s.r.o. Datum registrace: 3. 10. 2016. Datum přijetí: 5. 9. 2023.

DVOŘÁK, Petr; Pavel KREJČÍ; Lukáš BÁLEK; Lívia EISELLEOVÁ; Žaneta KONEČNÁ; Pavel DVOŘÁK; David BEDNÁŘ; Jan BREZOVSKÝ; Eva ŠEBESTOVÁ; Radka CHALOUPKOVÁ; Veronika ŠTĚPÁNKOVÁ; Pavel VAŇÁČEK; Zbyněk PROKOP; Jiří DAMBORSKÝ a Michaela BOSÁKOVÁ. Thermostable FGF2 polypeptide, use thereof. 2023. Patent. Číslo: CA3006388. Vydavatel: Canadian Intellectual Property Office. Místo vydání: Gatineau, Quebec. Název vlastníka: Masarykova univerzita; Enantis s.r.o. Datum registrace: 3. 10. 2016. Datum přijetí: 9. 5. 2023.

DVOŘÁK, Petr; Pavel KREJČÍ; Lukáš BÁLEK; Lívia EISELLEOVÁ; Žaneta KONEČNÁ; Pavel DVOŘÁK; David BEDNÁŘ; Jan BREZOVSKÝ; Eva ŠEBESTOVÁ; Radka CHALOUPKOVÁ; Veronika ŠTĚPÁNKOVÁ; Pavel VAŇÁČEK; Zbyněk PROKOP; Jiří DAMBORSKÝ a Michaela BOSÁKOVÁ. Thermostable FGF2 Polypeptide, Use Thereof. 2023. Patent. Číslo: IN485239. Vydavatel: Intellectual Property India. Místo vydání: Dwarka, New Delhi. Název vlastníka: Masarykova univerzita; Enantis s.r.o. Datum registrace: 3. 10. 2016. Datum přijetí: 19. 12. 2023.

DVOŘÁK, Petr; Pavel KREJČÍ; Lukáš BÁLEK; Lívia EISELLEOVÁ; Žaneta KONEČNÁ; Pavel DVOŘÁK; David BEDNÁŘ; Jan BREZOVSKÝ; Eva ŠEBESTOVÁ; Radka CHALOUPKOVÁ; Veronika ŠTĚPÁNKOVÁ; Pavel VAŇÁČEK; Zbyněk PROKOP; Jiří DAMBORSKÝ a Michaela BOSÁKOVÁ. 熱安定性ＦＧＦ２ポリペプチド及びその使用. 2022. Patent. Číslo: JP7131772. Vydavatel: Japan Patent Office (JPO). Místo vydání: Kasumigaseki Chiyoda-ku, Tokyo. Název vlastníka: Masarykova univerzita, Enantis, s.r.o. Datum registrace: 3. 10. 2016. Datum přijetí: 29. 8. 2022.

MARQUES, Sérgio Manuel; Michaela SLÁNSKÁ; Klaudia CHMELOVÁ; Radka CHALOUPKOVÁ; Martin MAREK; Spencer CLARK; Jiří DAMBORSKÝ; Eric T. KOOL; David BEDNÁŘ a Zbyněk PROKOP. Mechanism-Based Strategy for Optimizing HaloTag Protein Labeling. JACS AU. WASHINGTON: AMER CHEMICAL SOC, 2022, roč. 2, č. 6, s. 1324-1337. ISSN 2691-3704. Dostupné z: https://doi.org/10.1021/jacsau.2c00002.

KŘIVÁNEK, Jan; Marcel SCHÜLLER; Zuzana MARINČÁK VRANKOVÁ; Hana PÁLOVÁ; Ondřej SLABÝ; Radka CHALOUPKOVÁ; Petr NICKL; Petr KAŠPÁREK; Jan PROCHÁZKA; Radislav SEDLÁČEK a Petra BOŘILOVÁ LINHARTOVÁ. Modelling of a rare mutation in the GALNT3 gene found in patient with teeth and bone defects using genetically engineered mice. In 4th CPP Phenogenomics conference 2022. 2022.

MARKOVÁ, Klára; Antonín KUNKA; Klaudia CHMELOVÁ; Martin HAVLÁSEK; Petra BABKOVÁ; Sérgio Manuel MARQUES; Michal VAŠINA; Joan PLANAS IGLESIAS; Radka CHALOUPKOVÁ; David BEDNÁŘ; Zbyněk PROKOP; Jiří DAMBORSKÝ a Martin MAREK. Computational Enzyme Stabilization Can Affect Folding Energy Landscapes and Lead to Catalytically Enhanced Domain-Swapped Dimers. ACS Catalysis. WASHINGTON: AMER CHEMICAL SOC, 2021, roč. 11, č. 21, s. 12864-12885. ISSN 2155-5435. Dostupné z: https://doi.org/10.1021/acscatal.1c03343.

IERMAK, Iuliia; Oksana DEGTJARIK; Petra HAVLICKOVA; Michal KUTY; Radka CHALOUPKOVÁ; Jiří DAMBORSKÝ; Tanyana PRUDNIKOVA a Ivana KUTA SMATANOVA. Description of Transport Tunnel in Haloalkane Dehalogenase Variant LinB D147C+L177C from Sphingobium japonicum. Catalysts. Basel: MDPI, 2021, roč. 11, č. 1, s. 1-15. ISSN 2073-4344. Dostupné z: https://doi.org/10.3390/catal11010005.

TOUL, Martin; Andrea SMITH; José Gaspar RANGEL PAMPLONA PIZARRO PINTO; Martin MAREK; Lenka HERNYCHOVÁ; Veronika LIŠKOVÁ; Daniel PLUSKAL; Stephane EMOND; Mark DÖRR; Joan PLANAS IGLESIAS; Radka CHALOUPKOVÁ; David BEDNÁŘ; Zbyněk PROKOP; Uwe T. BORNSCHEUER; Florian HOLLFELDER a Jiří DAMBORSKÝ. Engineering protein dynamics for the understanding of divergent evolution of the Renilla luciferase. In The 45th FEBS Congress. 2021. ISSN 2211-5463.

SCHENKMAYEROVÁ, Andrea; José Gaspar RANGEL PAMPLONA PIZARRO PINTO; Martin TOUL; Martin MAREK; Lenka HERNYCHOVÁ; Joan PLANAS IGLESIAS; Veronika LIŠKOVÁ; Daniel PLUSKAL; Michal VAŠINA; Stephane EMOND; Mark DÖRR; Radka CHALOUPKOVÁ; David BEDNÁŘ; Zbyněk PROKOP; Florian HOLLFELDER; Uwe T. BORNSCHEUER a Jiří DAMBORSKÝ. Engineering the protein dynamics of an ancestral luciferase. Nature Communications. London: Nature Publishing Group, 2021, roč. 12, č. 1, s. 3616-3631. ISSN 2041-1723. Dostupné z: https://doi.org/10.1038/s41467-021-23450-z.

SHAPOSHNIKOVA, Anastasiia; Michal KUTY; Radka CHALOUPKOVÁ; Jiří DAMBORSKÝ; Ivana KUTA SMATANOVA; Babak MINOFAR a Tanyana PRUDNIKOVA. Stabilization of Haloalkane Dehalogenase Structure by Interfacial Interaction with Ionic Liquids. Crystals. MDPI, 2021, roč. 11, č. 9, s. 1-16. ISSN 2073-4352. Dostupné z: https://doi.org/10.3390/cryst11091052.

MAZUR, Andrii; Pavel GRINKEVICH; Radka CHALOUPKOVÁ; Petra HAVLICKOVA; Barbora KASCAKOVA; Michal KUTY; Jiří DAMBORSKÝ; Ivana KUTA SMATANOVA a Tatyana PRUDNIKOVA. Structural Analysis of the Ancestral Haloalkane Dehalogenase AncLinB-DmbA. International Journal of Molecular Sciences. Basel: Multidisciplinary Digital Publishing Institute, 2021, roč. 22, č. 21, s. 1-14. ISSN 1422-0067. Dostupné z: https://doi.org/10.3390/ijms222111992.

MAZUR, Andrii; Tanyana PRUDNIKOVA; Pavel GRINKEVICH; Jeroen R. MESTERS; Daria MRAZOVA; Radka CHALOUPKOVÁ; Jiří DAMBORSKÝ; Michal KUTY; Petr KOLENKO a Ivana KUTA SMATANOVA. The tetrameric structure of the novel haloalkane dehalogenase DpaA from Paraglaciecola agarilytica NO2. Acta Crystallographica Section D: Structural Biology. Chester: International Union of Crystallography, 2021, roč. 77, March 2021, s. 347-356. ISSN 2059-7983. Dostupné z: https://doi.org/10.1107/S2059798321000486.

DVOŘÁK, Petr; Pavel KREJČÍ; Lukáš BÁLEK; Lívia EISELLEOVÁ; Žaneta KONEČNÁ; Pavel DVOŘÁK; David BEDNÁŘ; Jan BREZOVSKÝ; Eva ŠEBESTOVÁ; Radka CHALOUPKOVÁ; Veronika ŠTĚPÁNKOVÁ; Pavel VAŇÁČEK; Zbyněk PROKOP; Jiří DAMBORSKÝ a Michaela BOSÁKOVÁ. Thermostable FGF2 polypeptide, use thereof. 2021. Patent. Číslo: AU2016359722. Vydavatel: Australian Patent Office. Místo vydání: Australia. Název vlastníka: Masarykova Univerzita; Enantis s.r.o. Datum registrace: 3. 10. 2016. Datum přijetí: 7. 1. 2021.

DVOŘÁK, Petr; Pavel KREJČÍ; Lukáš BÁLEK; Lívia EISELLEOVÁ; Žaneta KONEČNÁ; Pavel DVOŘÁK; David BEDNÁŘ; Jan BREZOVSKÝ; Eva ŠEBESTOVÁ; Radka CHALOUPKOVÁ; Veronika ŠTĚPÁNKOVÁ; Pavel VAŇÁČEK; Zbyněk PROKOP; Jiří DAMBORSKÝ a Michaela BOSÁKOVÁ. Thermostable FGF2 Polypeptide, Use Thereof. 2021. Patent. Číslo: SG11201804402W. Vydavatel: Intellectual Property Office of Singapore (IPOS). Místo vydání: Singapur. Název vlastníka: Masarykova univerzita; Enantis s.r.o. Datum registrace: 3. 10. 2016. Datum přijetí: 5. 4. 2021.

CHMELOVÁ, Klaudia; Eva ŠEBESTOVÁ; Veronika LIŠKOVÁ; Andy BEIER; David BEDNÁŘ; Zbyněk PROKOP; Radka CHALOUPKOVÁ a Jiří DAMBORSKÝ. A Haloalkane Dehalogenase from Saccharomonospora viridis Strain DSM 43017, a Compost Bacterium with Unusual Catalytic Residues, Unique (S)-Enantiopreference, and High Thermostability. Applied and Environmental Microbiology. Washington, D.C.: American Society for Microbiology, 2020, roč. 86, č. 17, s. 1-12. ISSN 0099-2240. Dostupné z: https://doi.org/10.1128/AEM.02820-19.

LIPOVÝ, Břetislav; Lucy VOJTOVÁ; Veronika ŠTĚPÁNKOVÁ; Jakub HOLOUBEK; Martin KNOZ; Radka CHALOUPKOVÁ; Zdeněk PAVLOVSKÝ; Martin FALDYNA; Eduard GÖPFERT a Vanessa HEARNDEN. Current status and future perspectives of fibroblast growth factor 2 in wound healing. In 6th CONGRESS OF WUWHS. 2020.

MAREK, Martin; Radka CHALOUPKOVÁ; Tanyana PRUDNIKOVA; Yukari SATO; Pavlina REZACOVA; Yuji NAGATA; Ivana SMATANOVA KUTA a Jiří DAMBORSKÝ. Structural and catalytic effects of surface loop-helix transplantation within haloalkane dehalogenase family. Computational and Structural Biotechnology Journal. Amsterdam: Elsevier, 2020, roč. 18, December 2020, s. 1352-1362. ISSN 2001-0370. Dostupné z: https://doi.org/10.1016/j.csbj.2020.05.019.

BABKOVÁ, Petra; Zuzana DUNAJOVÁ; Radka CHALOUPKOVÁ; Jiří DAMBORSKÝ; David BEDNÁŘ a Martin MAREK. Structures of hyperstable ancestral haloalkane dehalogenases show restricted conformational dynamics. Computational and Structural Biotechnology Journal. Amsterdam: Elsevier, 2020, roč. 18, č. 2020, s. 1497-1508. ISSN 2001-0370. Dostupné z: https://doi.org/10.1016/j.csbj.2020.06.021.

DVOŘÁK, Petr; Pavel KREJČÍ; Lukáš BÁLEK; Lívia EISELLEOVÁ; Žaneta KONEČNÁ; Pavel DVOŘÁK; David BEDNÁŘ; Jan BREZOVSKÝ; Eva ŠEBESTOVÁ; Radka CHALOUPKOVÁ; Veronika ŠTĚPÁNKOVÁ; Pavel VAŇÁČEK; Zbyněk PROKOP; Jiří DAMBORSKÝ a Michaela BOSÁKOVÁ. Thermostable FGF2 Polypeptide, Use Thereof. 2020. Patent. Číslo: EP3380508. Vydavatel: European Patent Office. Místo vydání: Munich. Název vlastníka: Masarykova univerzita; Enantis s.r.o. Datum registrace: 3. 10. 2016. Datum přijetí: 22. 7. 2020.

TRATSIAK, K.; Tanyana PRUDNIKOVA; Ivana DRIENOVSKÁ; Jiří DAMBORSKÝ; Jiří BRYNDA; Petr PACHL; Michal KUTÝ; Radka CHALOUPKOVÁ; P. REZACOVA a I.K. SMATANOVA. Crystal structure of the cold-adapted haloalkane dehalogenase DpcA from Psychrobacter cryohalolentis K5. ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY COMMUNICATIONS. CHESTER: INT UNION CRYSTALLOGRAPHY, 2019, roč. 75, MAY 2019, s. 324-331. ISSN 2053-230X. Dostupné z: https://doi.org/10.1107/S2053230X19002796.

PRUDNIKOVA, T.; B. KASCAKOVA; J.R. MESTERS; P. GRINKEVICH; P. HAVLICKOVA; A. MAZUR; A. SHAPOSHNIKOVA; Radka CHALOUPKOVÁ; Jiří DAMBORSKÝ; M. KUTY a I.K. SMATANOVA. Crystallization and Crystallographic Analysis of a Bradyrhizobium Elkanii USDA94 Haloalkane Dehalogenase Variant with an Eliminated Halide-Binding Site. CRYSTALS. BASEL: MDPI, 2019, roč. 9, č. 7, s. 1-12. ISSN 2073-4352. Dostupné z: https://doi.org/10.3390/cryst9070375.

CHRÁST, Lukáš; K. TRATSIAK; Joan PLANAS IGLESIAS; Lukáš DANIEL; T. PRUDNIKOVA; Jan BREZOVSKÝ; David BEDNÁŘ; I.K. SMATANOVA; Radka CHALOUPKOVÁ a Jiří DAMBORSKÝ. Deciphering the Structural Basis of High Thermostability of Dehalogenase from Psychrophilic Bacterium Marinobacter sp. ELB17. Microorganisms. Basel: MDPI, 2019, roč. 7, č. 11, s. 1-20. ISSN 2076-2607. Dostupné z: https://doi.org/10.3390/microorganisms7110498.

KOLEDOVÁ, Zuzana; Jakub SUMBAL; Anas RABATA; Gabin DE LA BOURDONNAYE; Radka CHALOUPKOVÁ; Barbara HRDLIČKOVÁ; Jiří DAMBORSKÝ a Veronika ŠTĚPÁNKOVÁ. Fibroblast Growth Factor 2 Protein Stability Provides Decreased Dependence on Heparin for Induction of FGFR Signaling and Alters ERK Signaling Dynamics. Frontiers in Cell and Developmental Biology. Lausanne: Frontiers Media S.A., 2019, roč. 7, č. 331, s. 1-15. ISSN 2296-634X. Dostupné z: https://doi.org/10.3389/fcell.2019.00331.

SCHENKMAYEROVA, A.; G. PINTO; Martin MAREK; Martin TOUL; Lenka HERNYCHOVÁ; Veronika LIŠKOVÁ; S. EMOND; David BEDNÁŘ; Zbyněk PROKOP; Radka CHALOUPKOVÁ; F. HOLLFELDER a U.T. BORNSCHEUER. Functional switching based on altered enzyme flexibility via InDel mutagenesis of a reconstructed ancestor. In European Biotechnology Congress. 2019. ISSN 0168-1656. Dostupné z: https://doi.org/10.1016/j.jbiotec.2019.05.118.

SVATOŇ, Roman; Zdeněk KALA; Vladimír PROCHÁZKA; Michal EID; Tomáš ANDRAŠINA; Karolina POREDSKÁ; Jana STRENKOVÁ; Radka CHALOUPKOVÁ a Lumír KUNOVSKÝ. Gastrointestinální stromální tumory rekta - hodnocení dat národního registru s ohledem na využití v klinické praxi. Klinická onkologie. Praha: Ambit Media, 2019, roč. 32, č. 2, s. 117-123. ISSN 0862-495X. Dostupné z: https://doi.org/10.14735/amko2019117.

CHALOUPKOVÁ, Radka; Veronika LIŠKOVÁ; Martin TOUL; Klára MARKOVÁ; Eva ŠEBESTOVÁ; Lenka HERNYCHOVÁ; Martin MAREK; José Gaspar RANGEL PAMPLONA PIZARRO PINTO; Daniel PLUSKAL; Jitka WATERMAN; Zbyněk PROKOP a Jiří DAMBORSKÝ. Light-Emitting Dehalogenases: Reconstruction of Multifunctional Biocatalysts. ACS Catalysis. Washington, D.C.: AMER CHEMICAL SOC, 2019, roč. 9, č. 6, s. 4810-4823. ISSN 2155-5435. Dostupné z: https://doi.org/10.1021/acscatal.9b01031.

LIPOVÝ, Břetislav; Lucy VOJTOVA; Veronika STEPANKOVA; Jakub HOLOUBEK; Martin KNOZ; Radka CHALOUPKOVÁ; Zdenek PAVLOVSKY; Martin FALDYNA; Eduard GOPFERT a Vanessa HEARNDEN. Stable fibroblast growth factors in burn medicine research. In Workshop of the European Club for Pediatric Burns. 2019.

KOKKONEN, Piia Pauliina; Táňa KOUDELÁKOVÁ; Radka CHALOUPKOVÁ; Lukáš DANIEL; Zbyněk PROKOP a Jiří DAMBORSKÝ. Structure-Function Relationships and Engineering of Haloalkane Dehalogenases. In Aerobic Utilization of Hydrocarbons, Oils, and Lipids. Cham: Springer, 2019, s. 367-387. 1. ISBN 978-3-319-50417-9. Dostupné z: https://doi.org/10.1007/978-3-319-50418-6_15.

DVOŘÁK, Pavel; David BEDNÁŘ; Pavel VAŇÁČEK; Lukáš BÁLEK; Lívia EISELLEOVÁ; Veronika ŠTĚPÁNKOVÁ; Eva ŠEBESTOVÁ; Michaela BOSÁKOVÁ; Žaneta KONEČNÁ; Stanislav MAZURENKO; Antonín KUNKA; Tereza VÁŇOVÁ; Karolína ZOUFALOVÁ; Radka CHALOUPKOVÁ; Jan BREZOVSKÝ; Pavel KREJČÍ; Zbyněk PROKOP; Petr DVOŘÁK a Jiří DAMBORSKÝ. Computer-assisted engineering of hyperstable fibroblast growth factor 2. Biotechnology and Bioengineering. New York: Wiley, 2018, roč. 115, č. 4, s. 850-862. ISSN 0006-3592. Dostupné z: https://doi.org/10.1002/bit.26531.

CHRÁST, Lukáš; Pavel DVOŘÁK; Radka CHALOUPKOVÁ; V. DE LORENZO a Jiří DAMBORSKÝ. Engineering of bacterial strains for degradation of environmental pollutants by synthetic biology. In The 43rd FEBS Congress. 2018. ISSN 2211-5463.

BEERENS, Koen; Stanislav MAZURENKO; Antonín KUNKA; Sérgio Manuel MARQUES; N. HANSEN; Miloš MUSIL; Radka CHALOUPKOVÁ; Jitka WATERMAN; Jan BREZOVSKÝ; David BEDNÁŘ; Zbyněk PROKOP a Jiří DAMBORSKÝ. Evolutionary Analysis As a Powerful Complement to Energy Calculations for Protein Stabilization. ACS Catalysis. WASHINGTON: AMER CHEMICAL SOC, 2018, roč. 8, č. 10, s. 9420-9428. ISSN 2155-5435. Dostupné z: https://doi.org/10.1021/acscatal.8b01677.

VAŇÁČEK, Pavel; Eva ŠEBESTOVÁ; Petra BABKOVÁ; Šárka NEVOLOVÁ; Lukáš DANIEL; Pavel DVOŘÁK; Veronika ŠTĚPÁNKOVÁ; Radka CHALOUPKOVÁ; Jan BREZOVSKÝ; Zbyněk PROKOP a Jiří DAMBORSKÝ. Exploration of Enzyme Diversity by Integrating Bioinformatics with Expression Analysis and Biochemical Characterization. ACS Catalysis. WASHINGTON: AMER CHEMICAL SOC, 2018, roč. 8, č. 3, s. 2402-2412, 21 s. ISSN 2155-5435. Dostupné z: https://doi.org/10.1021/acscatal.7b03523.

CHRÁST, Lukáš; Radka CHALOUPKOVÁ a Jiří DAMBORSKÝ. Gram-scale Production of Recombinant Microbial Enzymes in Shake Flasks. FEMS Microbiology Letters. Elsevier Science, 2018, roč. 365, č. 2, s. 1-7. ISSN 0378-1097. Dostupné z: https://doi.org/10.1093/femsle/fnx265.

KAUSHIK, Shubhangi; Sérgio Manuel MARQUES; Prashant Kumar KHIRSARIYA; Kamil PARUCH; Lenka LIBICHOVÁ; Jan BREZOVSKÝ; Zbyněk PROKOP; Radka CHALOUPKOVÁ a Jiří DAMBORSKÝ. Impact of the access tunnel engineering on catalysis is strictly ligand-specific. the FEBS Journal. 2018, roč. 285/2018, č. 8, s. 1456-1476. ISSN 1742-464X. Dostupné z: https://doi.org/10.1111/febs.14418.

BABKOVÁ, Petra; Eva ŠEBESTOVÁ; Jan BREZOVSKÝ; Radka CHALOUPKOVÁ a Jiří DAMBORSKÝ. Ancestral Haloalkane Dehalogenases Show Robustness and Unique Substrate Specificity. CHEMBIOCHEM. 2017, roč. 18, č. 14, s. 1448-1456. ISSN 1439-4227. Dostupné z: https://doi.org/10.1002/cbic.201700197.

MARQUES, Sérgio Manuel; Zuzana DUNAJOVÁ; Zbyněk PROKOP; Radka CHALOUPKOVÁ; Jan BREZOVSKÝ a Jiří DAMBORSKÝ. Catalytic Cycle of Haloalkane Dehalogenases Toward Unnatural Substrates Explored by Computational Modeling. JOURNAL OF CHEMICAL INFORMATION AND MODELING. DC USA: AMER CHEMICAL SOC, 2017, roč. 57, č. 8, s. 1970-1989. ISSN 1549-9596. Dostupné z: https://doi.org/10.1021/acs.jcim.7b00070.

LIŠKOVÁ, Veronika; Veronika ŠTĚPÁNKOVÁ; David BEDNÁŘ; Jan BREZOVSKÝ; Zbyněk PROKOP; Radka CHALOUPKOVÁ a Jiří DAMBORSKÝ. Different Structural Origins of the Enantioselectivity of Haloalkane Dehalogenases toward Linear beta-Haloalkanes: Open–Solvated versus Occluded–Desolvated Active Sites. Angewandte Chemie International Edition. WEINHEIM, GERMANY: WILEY-V C H VERLAG, 2017, roč. 56, č. 17, s. 4719-4723. ISSN 1433-7851. Dostupné z: https://doi.org/10.1002/anie.201611193.

SMATANOVA, Ivana Kuta; Iuliia IERMAK; Radka CHALOUPKOVÁ a Jiří DAMBORSKÝ. Haloalkane dehalogenases as a subject for crystallographic studies. In ACTA CRYSTALLOGRAPHICA A-FOUNDATION AND ADVANCES. 2017. ISSN 2053-2733.

KAUSHIK, Shubhangi; Zbyněk PROKOP; Jiří DAMBORSKÝ a Radka CHALOUPKOVÁ. Kinetics of Binding of Fluorescent Ligands to Enzymes with Engineered Access Tunnels. FEBS Journal. Hoboken, NJ USA: WILEY-BLACKWELL, 2017, roč. 284, č. 1, s. 134-148. ISSN 1742-464X. Dostupné z: https://doi.org/10.1111/febs.13957.

BABKOVÁ, Petra; Radka CHALOUPKOVÁ; Zbyněk PROKOP a Jiří DAMBORSKÝ. Recombinant enzyme haloalkane dehalogenase LinB116 carrying thermostabilizing mutations by FRESCO with removed disulphide bridge. 2017.

KOKKONEN, Piia Pauliina; Táňa KOUDELÁKOVÁ; Radka CHALOUPKOVÁ; Lukáš DANIEL; Zbyněk PROKOP a Jiří DAMBORSKÝ. Structure-function Relationships and Engineering of Haloalkane Dehalogenases. Online. In Rojo, Fernando. HANDBOOK OF HYDROCARBON AND LIPID MICROBIOLOGY SERIES. AEROBIC UTILIZATION OF HYDROCARBONS, OILS, AND LIPIDS. Heidelberg: Springer, Cham, 2017, s. 1-21. ISBN 978-3-319-50419-3. Dostupné z: https://doi.org/10.1007/978-3-319-39782-5.

BREZOVSKÝ, Jan; Petra BABKOVÁ; Oksana DEGTJARIK; Andrea FOŘTOVÁ; Artur Wiktor GÓRA; L. IERMAK; Petra ŘEZÁČOVÁ; Pavel DVOŘÁK; Ivana KUTÁ-SMATANOVÁ; Zbyněk PROKOP; Radka CHALOUPKOVÁ a Jiří DAMBORSKÝ. Engineering a de Novo Transport Tunnel. ACS Catalysis. WASHINGTON: AMER CHEMICAL SOC, 2016, roč. 6, č. 11, s. 7597-7610. ISSN 2155-5435. Dostupné z: https://doi.org/10.1021/acscatal.6b02081.

KRAUSKOVÁ, Ľubica; Jitka PROCHÁZKOVÁ; Martina KLAŠKOVÁ; Lenka FILIPOVÁ; Radka CHALOUPKOVÁ; Stanislav MALÝ; Jiří DAMBORSKÝ a Dominik HEGER. Suppression of protein inactivation during freezing by minimizing pH changes using ionic cryoprotectants. International Journal of Pharmaceutics. 2016, roč. 509, 1-2, s. 41-49. ISSN 0378-5173. Dostupné z: https://doi.org/10.1016/j.ijpharm.2016.05.031.

KRUPKA, Michal; Josef MASEK; Lucia BARKOCZIOVA; Pavlina Turanek KNOTIGOVA; Pavel KULICH; Jana PLOCKOVA; Robert LUKAC; Eliska BARTHELDYOVA; Stepan KOUDELKA; Radka CHALOUPKOVÁ; Marek SEBELA; Daniel ZYKA; Ladislav DROZ; Roman EFFENBERG; Miroslav LEDVINA; Andrew D. MILLER; Jaroslav TURANEK a Milan RASKA. The Position of His-Tag in Recombinant OspC and Application of Various Adjuvants Affects the Intensity and Quality of Specific Antibody Response after Immunization of Experimental Mice. Plos one. San Francisco: Public Library of Science, 2016, roč. 11, č. 2, s. "nestrankovano", 17 s. ISSN 1932-6203. Dostupné z: https://doi.org/10.1371/journal.pone.0148497.

LIŠKOVÁ, Veronika; David BEDNÁŘ; T. PRUDNIKOVA; P. REZACOVA; Táňa KOUDELÁKOVÁ; Eva ŠEBESTOVÁ; I., KUTA- SMATANOVÁ; Jan BREZOVSKÝ; Radka CHALOUPKOVÁ a Jiří DAMBORSKÝ. Balancing the Stability-Activity Trade-off by Fine-Tuning Dehalogenase Access Tunnels. ChemCatChem. 2015, roč. 7, č. 4, s. 648-659. ISSN 1867-3880. Dostupné z: https://doi.org/10.1002/cctc.201402792.

ŠARMÍROVÁ, Klaudia; Radka CHALOUPKOVÁ; Zbyněk PROKOP a Jiří DAMBORSKÝ. DsvA from Saccharomonospora viridis DSM 43017. 2015.

CHRÁST, Lukáš; Radka CHALOUPKOVÁ; Zbyněk PROKOP a Jiří DAMBORSKÝ. Enzyme haloalkane dehalogenase DmxA from Marinobacter sp. ELB17 purified to homogeneity. 2015.

DVOŘÁK, Pavel; Lukáš CHRÁST; Pablo Ivan NIKEL; Radek FEDR; Karel SOUČEK; Miroslava SEDLÁČKOVÁ; Radka CHALOUPKOVÁ; Víctor LORENZO DE; Zbyněk PROKOP a Jiří DAMBORSKÝ. Exacerbation of Substrate Toxicity by IPTG in Escherichia coli BL21(DE3) Carrying a Synthetic Metabolic Pathway. Microbial Cell Factories. London: BioMed Central, 2015, roč. 14, December, s. "nestrankovano", 15 s. ISSN 1475-2859. Dostupné z: https://doi.org/10.1186/s12934-015-0393-3.

BEDNÁŘ, David; Koen BEERENS; Eva ŠEBESTOVÁ; Jaroslav BENDL; S. KHARE; Radka CHALOUPKOVÁ; Zbyněk PROKOP; Jan BREZOVSKÝ; D. BAKER a Jiří DAMBORSKÝ. FireProt: Energy- and Evolution-Based Computational Design of Thermostable Multiple-Point Mutants. PLOS COMPUTATIONAL BIOLOGY. 2015, roč. 11, č. 11, s. "nestrankovano", 20 s. ISSN 1553-734X. Dostupné z: https://doi.org/10.1371/journal.pcbi.1004556.

ŠTĚPÁNKOVÁ, Veronika; Jiří DAMBORSKÝ a Radka CHALOUPKOVÁ. Hydrolases in Non-Conventional Media: Implications for Industrial Biocatalysis. In Peter Grunwald. INDUSTRIAL BIOCATALYSIS. New York: Pan Stanford Publishing, 2015, s. 583-620. ISBN 978-981-4463-88-1.

BUCHTOVÁ, marcela; Radka CHALOUPKOVÁ; Malgorzata ZAKRZEWSKA; Iva VESELÁ; Petra CELÁ; Jana BARÁTHOVÁ; Iva GUDERNOVÁ; Renata ZAJICKOVA; Lukáš TRANTÍREK; Jorge MARTIN; Martin KOSTAS; Jacek OTLEWSKI; Jiří DAMBORSKÝ; Alois KOZUBÍK; Antoni WIEDLOCHA a Pavel KREJČÍ. Instability restricts signaling of multiple fibroblast growth factors. Cellular and Molecular Life Sciences. Basel: Springer, 2015, roč. 72, č. 12, s. 2445-2459. ISSN 1420-682X. Dostupné z: https://doi.org/10.1007/s00018-015-1856-8.

BABKOVÁ, Petra; Radka CHALOUPKOVÁ; Zbyněk PROKOP a Jiří DAMBORSKÝ. Recombinant ancestral enzyme ancDbjA-DbeA NOD1. 2015.

BABKOVÁ, Petra; Radka CHALOUPKOVÁ; Zbyněk PROKOP a Jiří DAMBORSKÝ. Recombinant ancestral enzyme ancDbjA-DbeA NOD2. 2015.

BABKOVÁ, Petra; Radka CHALOUPKOVÁ; Zbyněk PROKOP a Jiří DAMBORSKÝ. Recombinant ancestral enzyme ancDbjA-DbeA NOD3. 2015.

BABKOVÁ, Petra; Radka CHALOUPKOVÁ; Zbyněk PROKOP a Jiří DAMBORSKÝ. Recombinant ancestral enzyme ancDbjA-DbeA NOD4. 2015.

BABKOVÁ, Petra; Radka CHALOUPKOVÁ; Zbyněk PROKOP a Jiří DAMBORSKÝ. Recombinant ancestral enzyme ancDbjA-DbeA NOD5. 2015.

BABKOVÁ, Petra; Radka CHALOUPKOVÁ; Zbyněk PROKOP a Jiří DAMBORSKÝ. Recombinant ancestral enzyme ancHLD-Rluc. 2015.

BABKOVÁ, Petra; Radka CHALOUPKOVÁ; Zbyněk PROKOP a Jiří DAMBORSKÝ. Recombinant ancestral enzyme ancLinB-DmbA. 2015.

AMARO, M.; Jan BREZOVSKÝ; Silvia KOVÁČOVÁ; J. SYKORA; David BEDNÁŘ; Václav NĚMEC; Veronika LIŠKOVÁ; Nagendra Prasad KURUMBANG; Koen BEERENS; Radka CHALOUPKOVÁ; Kamil PARUCH; Martina HOF a Jiří DAMBORSKÝ. Site-specific Analysis of Protein Hydration Based on Unnatural Amino Acid Fluorescence. Journal of the American Chemical Society. 2015, roč. 137, č. 15, s. 4988-4992. ISSN 0002-7863. Dostupné z: https://doi.org/10.1021/jacs.5b01681.

ŠTĚPÁNKOVÁ, Veronika; Pavel VAŇÁČEK; Jiří DAMBORSKÝ a Radka CHALOUPKOVÁ. Comparison of Catalysis by Haloalkane Dehalogenases in Aqueous Solutions of a Deep Eutectic and Organic Solvents. Green Chemistry. 2014, roč. 16, č. 5, s. 2754-2761. ISSN 1463-9262. Dostupné z: https://doi.org/10.1039/c4gc00117f.

LAHODA, M.; J.R. MESTERS; A. STSIAPANAVA; Radka CHALOUPKOVÁ; M. KUTY; Jiří DAMBORSKÝ a I. KUTA SMATANOVA. Crystallographic Analysis of 1,2,3–Trichloropropane Biodegradation by Haloalkane Dehalogenase DhaA31. Acta Crystallographica D. 2014, roč. 70, february, s. 209-217. ISSN 0907-4449. Dostupné z: https://doi.org/10.1107/S1399004713026254.

SYKORA, J.; Jan BREZOVSKÝ; Táňa KOUDELÁKOVÁ; M. LAHODA; Andrea FOŘTOVÁ; T. CHERNOVETS; Radka CHALOUPKOVÁ; Veronika ŠTĚPÁNKOVÁ; Zbyněk PROKOP; I. KUTA SMATANOVA; M. HOF a Jiří DAMBORSKÝ. Dynamics and Hydration Explain Failed Functional Transformation in Dehalogenase Design. Nature Chemical Biology. 2014, roč. 10, č. 6, s. 428-430. ISSN 1552-4450.

VYMETAL, Jiří; Sreenivas Reddy BATHULA; Jiří ČERNÝ; Radka CHALOUPKOVÁ; Lukáš ŽÍDEK; Vladimír SKLENÁŘ a Jiří VONDRÁŠEK. Retro operation on the Trp-cage miniprotein sequence produces an unstructured molecule capable of folding similar to the original only upon 2,2,2-trifluoroethanol addition. PROTEIN ENGINEERING DESIGN & SELECTION. OXFORD: OXFORD UNIV PRESS, 2014, roč. 27, č. 12, s. 463-472. ISSN 1741-0126. Dostupné z: https://doi.org/10.1093/protein/gzu046.

CHALOUPKOVÁ, Radka; T. PRUDNIKOVA; P. REZACOVA; Zbyněk PROKOP; Táňa KOUDELÁKOVÁ; Lukáš DANIEL; Jan BREZOVSKÝ; W. IKEDA-OHTSUBO; Y. SATO; M. KUTY; Y. NAGATA; I. KUTA SMATANOVA a Jiří DAMBORSKÝ. Structural and Functional Analysis of a Novel Haloalkane Dehalogenase with Two Halide-Binding Sites. Acta Crystallographica D. 2014, roč. 70, July, s. 1884-1897. ISSN 0907-4449. Dostupné z: https://doi.org/10.1107/S1399004714009018.

CHALOUPKOVÁ, Radka a Jiří DAMBORSKÝ. Upravený rekombinantní enzym haloalkan dehalogenasa DbeA 01. 2014.

CHALOUPKOVÁ, Radka a Jiří DAMBORSKÝ. Upravený rekombinantní enzym haloalkan dehalogenasa DbeA 02. 2014.

CHALOUPKOVÁ, Radka a Jiří DAMBORSKÝ. Upravený rekombinantní enzym haloalkan dehalogenase DbeA03. 2014.

AMARO, Mariana; Jan BREZOVSKÝ; Silvia KOVÁČOVÁ; Lukáš MAIER; Radka CHALOUPKOVÁ; Jan SYKORA; Kamil PARUCH; Jiří DAMBORSKÝ a Martin HOF. Are Time-Dependent Fluorescence Shifts at the Tunnel Mouth of Haloalkane Dehalogenase Enzymes Dependent on the Choice of the Chromophore? Journal of Physical Chemistry B. WASHINGTON: AMER CHEMICAL SOC, 2013, roč. 117, č. 26, s. 7898-7906. ISSN 1520-6106. Dostupné z: https://doi.org/10.1021/jp403708c.

ŠTĚPÁNKOVÁ, Veronika; J. PATEROVA; Jiří DAMBORSKÝ; P. JUNGWIRTH; Radka CHALOUPKOVÁ a J. HEYDA. Cation-Specific Effects on Enzymatic Catalysis Driven by Interactions at the Tunnel Mouth. Journal of Physical Chemistry B. 2013, roč. 117, č. 21, s. 6394-6402. ISSN 1520-6106. Dostupné z: https://doi.org/10.1021/jp401506v.

TRATSIAK, K.; O. DEGTJARIK; I. DRIENOVSKA; Lukáš CHRÁST; P. REZACOVA; M. KUTY; Radka CHALOUPKOVÁ; Jiří DAMBORSKÝ a I. KUTA SMATANOVA. Crystallographic Analysis of New Psychrophilic Haloalkane Dehalogenases: DpcA from Psychrobacter cryohalolentis K5 and DmxA from Marinobacter sp. ELB17. Acta Crystallographica. 2013, roč. 2013, F69, s. 683-688. ISSN 1744-3091. Dostupné z: https://doi.org/10.1107/S1744309113012979.

DEGTJARIK, O.; Radka CHALOUPKOVÁ; P. REZACOVA; M. KUTY; Jiří DAMBORSKÝ a I. KUTA SMATANOVA. Differences in crystallization of two LinB variants from Sphingobium japonicum UT26. Acta Crystallographica. 2013, roč. 69, Pt 3, s. 284-287. ISSN 1744-3091. Dostupné z: https://doi.org/10.1107/S1744309113002467.

FOŘTOVÁ, Andrea; Eva ŠEBESTOVÁ; Veronika ŠTĚPÁNKOVÁ; Táňa KOUDELÁKOVÁ; Lenka PÁLKOVÁ; Jiří DAMBORSKÝ a Radka CHALOUPKOVÁ. DspA from Strongylocentrotus purpuratus: the First Biochemically Characterized Haloalkane Dehalogenase of Non-Microbial Origin. Biochimie. Elsevier, 2013, roč. 95, č. 11, s. 2091-2096. ISSN 0300-9084. Dostupné z: https://doi.org/10.1016/j.biochi.2013.07.025.

KOUDELÁKOVÁ, Táňa; Radka CHALOUPKOVÁ; Jan BREZOVSKÝ; Zbyněk PROKOP; Eva ŠEBESTOVÁ; M. HESSELER; M. KHABIRI; M. PLEVAKA; D. KULIK; I. KUTA SMATANOVA; P. REZACOVA; R. ETTRICH; U.T. BORNSCHEUER a Jiří DAMBORSKÝ. Engineering Enzyme Stability and Resistance to an Organic Cosolvent by Modification of Residues in the Access Tunnel. Angewandte Chemie International Edition. Verlag Chemie, 2013, roč. 52, č. 7, s. 1959-1963. ISSN 1433-7851. Dostupné z: https://doi.org/10.1002/anie.201206708.

ŠTĚPÁNKOVÁ, Veronika; M. KHABIRI; Jan BREZOVSKÝ; Antonín PAVELKA; J. SYKORA; M. AMARO; B. MINOFAR; Zbyněk PROKOP; M. HOF; R. ETTRICH; Radka CHALOUPKOVÁ a Jiří DAMBORSKÝ. Expansion of Access Tunnels and Active-Site Cavities Influence Activity of Haloalkane Dehalogenases in Organic Cosolvents. ChemBioChem. WEINHEIM: WILEY-VCH, 2013, roč. 14, č. 7, s. 890-897. ISSN 1439-4227. Dostupné z: https://doi.org/10.1002/cbic.201200733.

KOUDELÁKOVÁ, Táňa; Šárka BIDMANOVÁ; Pavel DVOŘÁK; Antonín PAVELKA; Radka CHALOUPKOVÁ; Zbyněk PROKOP a Jiří DAMBORSKÝ. Haloalkane dehalogenases: Biotechnological applications. Biotechnology Journal. HOBOKEN: WILEY-BLACKWELL, 2013, roč. 8, č. 1, s. 32-45, 15 s. ISSN 1860-6768. Dostupné z: https://doi.org/10.1002/biot.201100486.

NOVOTNÁ, Jitka; Jana OLSOVSKA; Petr NOVAK; Peter MOJZEŠ; Radka CHALOUPKOVÁ; Zdenek KAMENIK; Jaroslav SPIZEK; Eva KUTEJOVA; Markéta MAREČKOVÁ; Pavel TICHY; Jiří DAMBORSKÝ a Jiri JANATA. Lincomycin Biosynthesis Involves a Tyrosine Hydroxylating Heme Protein of an Unusual Enzyme Family. Plos One. SAN FRANCISCO: PUBLIC LIBRARY SCIENCE, 2013, roč. 8, č. 12, s. "e79974-1"-"e79974-10", 10 s. ISSN 1932-6203. Dostupné z: https://doi.org/10.1371/journal.pone.0079974.

DAMBORSKÝ, Jiří; Zbyněk PROKOP; Táňa KOUDELÁKOVÁ; Veronika ŠTĚPÁNKOVÁ; Radka CHALOUPKOVÁ; Eva CHOVANCOVÁ; Jan BREZOVSKÝ a Artur Wiktor GORA. Method of Thermostabilization of a Protein And/or Stabilization Towards Organic Solvents. 2013. Patent. Číslo: US 8,580,932. Vydavatel: USTPO (Úřad pro patenty a ochranné známky USA). Název vlastníka: MU. Datum registrace: 5. 9. 2012. Datum přijetí: 12. 11. 2013.

ŠTĚPÁNKOVÁ, Veronika; Jiří DAMBORSKÝ a Radka CHALOUPKOVÁ. Organic Co-solvents Affect Activity, Stability and Enantioselectivity of Haloalkane Dehalogenases. Biotechnology Journal. 2013, roč. 8, č. 6, s. 719-729. ISSN 1860-6768. Dostupné z: https://doi.org/10.1002/biot.201200378.

PROKOP, Zbyněk; Radka CHALOUPKOVÁ a Jiří DAMBORSKÝ. Rekombinantní enzym haloalkan dehalogenáza DatA. 2013.

CHALOUPKOVÁ, Radka; Zbyněk PROKOP a Jiří DAMBORSKÝ. Rekombinantní enzym haloalkan dehalogenáza DspA. 2013.

HLADILKOVA, J.; Zbyněk PROKOP; Radka CHALOUPKOVÁ; Jiří DAMBORSKÝ a P. JUNGWIRTH. Release of Halide Ions from the Buried Active Site of the Haloalkane Dehalogenase LinB Revealed by Stopped-Flow Fluorescence Analysis and Free Energy Calculations. Journal of Physical Chemistry B. 2013, roč. 117, č. 46, s. 14329–14335. ISSN 1520-6106. Dostupné z: https://doi.org/10.1021/jp409040u.

ŠTĚPÁNKOVÁ, Veronika; Šárka BIDMANOVÁ; Táňa KOUDELÁKOVÁ; Zbyněk PROKOP; Radka CHALOUPKOVÁ a Jiří DAMBORSKÝ. Strategies for Stabilization and Activation of Biocatalysts in Organic Solvents. ACS Catalysis. 2013, roč. 3, č. 12, s. 2823-2836. ISSN 2155-5435. Dostupné z: https://doi.org/10.1021/cs400684x.

HASAN, Khomaini; Artur Wiktor GORA; Jan BREZOVSKÝ; Radka CHALOUPKOVÁ; Hana MOSKALÍKOVÁ; Andrea FOŘTOVÁ; Yuji NAGATA; Jiří DAMBORSKÝ a Zbyněk PROKOP. The Effect of a Unique Halide-Stabilising Residue on the Catalytic Properties of Haloalkane Dehalogenase DatA from Agrobacterium tumefaciens C58. FEBS Journal. Blackwell, 2013, roč. 280, č. 13, s. 3149-3159. ISSN 1742-464X. Dostupné z: https://doi.org/10.1111/febs.12238.

DRIENOVSKÁ, Ivana; Eva CHOVANCOVÁ; Táňa KOUDELÁKOVÁ; Jiří DAMBORSKÝ a Radka CHALOUPKOVÁ. Biochemical Characterization of a Novel Haloalkane Dehalogenase from a Cold-Adapted Bacterium. APPLIED AND ENVIRONMENTAL MICROBIOLOGY. 2012, roč. 78, č. 14, s. 4995-4998. ISSN 0099-2240. Dostupné z: https://doi.org/10.1128/AEM.00485-12.

CHALOUPKOVÁ, Radka; Zbyněk PROKOP; Jiří DAMBORSKÝ a Táňa KOUDELÁKOVÁ. Engineered recombinant enzyme haloalkane dehalogenase DhaA57. 2012.

CHALOUPKOVÁ, Radka; Zbyněk PROKOP; Jiří DAMBORSKÝ a Táňa KOUDELÁKOVÁ. Engineered recombinant enzyme haloalkane dehalogenase DhaA61. 2012.

CHALOUPKOVÁ, Radka; Zbyněk PROKOP; Jiří DAMBORSKÝ a Táňa KOUDELÁKOVÁ. Engineered recombinant enzyme haloalkane dehalogenase DhaA63. 2012.

CHALOUPKOVÁ, Radka; Zbyněk PROKOP; Jiří DAMBORSKÝ a Táňa KOUDELÁKOVÁ. Engineered recombinant enzyme haloalkane dehalogenase DhaA80. 2012.

CHALOUPKOVÁ, Radka; Zbyněk PROKOP; Jiří DAMBORSKÝ a Táňa KOUDELÁKOVÁ. Engineered recombinant enzyme haloalkane dehalogenase DhaA82. 2012.

CHALOUPKOVÁ, Radka; Zbyněk PROKOP; Jiří DAMBORSKÝ a Táňa KOUDELÁKOVÁ. Engineered recombinant enzyme haloalkane dehalogenase DhaA85. 2012.

CHALOUPKOVÁ, Radka; Zbyněk PROKOP; Jiří DAMBORSKÝ a Táňa KOUDELÁKOVÁ. Engineered recombinant enzyme haloalkane dehalogenase DhaA88. 2012.

DOKLÁDAL, Ladislav; Michal OBOŘIL; Karel STEJSKAL; Zbyněk ZDRÁHAL; Nikola PTÁČKOVÁ; Radka CHALOUPKOVÁ; Jiří DAMBORSKÝ; Tomáš KAŠPAROVSKÝ; Jeandroz SYLVAIN; Markéta ŽĎÁRSKÁ a Jan LOCHMAN. Physiological and proteomic approaches to evaluate the role of sterol binding in elicitin-induced resistance. Journal of Experimental Botany. Oxford: OXFORD UNIV PRESS, 2012, roč. 63, č. 5, s. 2203-2215. ISSN 0022-0957. Dostupné z: https://doi.org/10.1093/jxb/err427.

BALCAROVÁ, Zdeňka; Sylvie HOLUBOVÁ; Radka CHALOUPKOVÁ a Libuše TRNKOVÁ. A Study of Cytosine Oligonucleotides by Voltammetric and Spectral Methods. In Biopolymers: Structure and dynamics, A biophysical workshop. 2011. ISBN 978-80-263-0050-2.

DAMBORSKÝ, Jiří; Pavel DVOŘÁK; Zbyněk PROKOP; Radka CHALOUPKOVÁ; Martina PAVLOVÁ; Martin KLVAŇA; Michal OTYEPKA; R .C. WADE; Z. NAGATA; Eva HRDLIČKOVÁ a R. STLOUKAL. Biodegradation of 1,2,3-Trichloropropane. In Recent Trends in Developing Bioremediation Strategies for Hexachlorocyclohexane (HCH) & Other Chlorinated Contaminants. 2011.

HASAN, Khomaini; Andrea FOŘTOVÁ; Táňa KOUDELÁKOVÁ; Radka CHALOUPKOVÁ; M. ISHITSUKA; Yuji NAGATA; Jiří DAMBORSKÝ a Zbyněk PROKOP. Biochemical Characteristics of the Novel Haloalkane Dehalogenase DatA Isolated from the Plant Pathogen Agrobacterium tumefaciens C58. Applied and Environmental Microbiology. 2011, roč. 77, č. 5, s. 1881-1884. ISSN 0099-2240. Dostupné z: https://doi.org/10.1128/AEM.02109-10.

BIEDERMANNOVÁ, Lada; Zbyněk PROKOP; Radka CHALOUPKOVÁ; Pavel DVOŘÁK; Jiří DAMBORSKÝ a R. WAADE. Biology and Bioinformatics. 2011.

DAMBORSKÝ, Jiří; Pavel DVOŘÁK; Radka CHALOUPKOVÁ a Zbyněk PROKOP. Construction of pollutant-degrading bacteria by protein and metabolic engineering. 2011.

LAHODA, M.; Radka CHALOUPKOVÁ; Alena STSIAPANAVA; Jiří DAMBORSKÝ a I. SMATANOVA-KUTA. Crystallization and Crystallographic Analysis of the Rhodococcus rhodochrous NCIMB 13064 DhaA Mutant DhaA31 and its Complex with 1,2,3-Trichloropropane. Acta Crystallographica F. 2011, roč. 67, č. 67, s. 397-400. ISSN 1744-3091. Dostupné z: https://doi.org/10.1107/S1744309111001254.

STSIAPANAVA, Alena; Radka CHALOUPKOVÁ; Andrea FOŘTOVÁ; J. BRYNDA; M. S. WEISS; Jiří DAMBORSKÝ a I. KUTÁ-SMATANOVÁ. Crystallization and Preliminary Crystallographic Analysis of Rhodococcus rhodochrous Wild-type DhAa Protein and its Variant DhaA13 Complexed with Different Ligands. In IX. Discussions in Structural Molecular Biology and Bioinformatics. 2011.

STSIAPANAVA, Alena; Radka CHALOUPKOVÁ; Andrea FOŘTOVÁ; J. BRYNDA; M. S. WEISS; Jiří DAMBORSKÝ a Ivana KUTÁ-SMATANOVÁ. Crystallization and Preliminary X-ray Diffraction Analysis of the Wild-Type Haloalkane Dehalogenase DhaA and its Variant DhaA13 Complexed with Different Ligands. Acta Crystallographica F. 2011, roč. 67, č. 67, s. 253-257. ISSN 1744-3091. Dostupné z: https://doi.org/10.1107/S1744309110051286.

LAHODA, Maryna; Radka CHALOUPKOVÁ; Alena STSIAPANAVA; Jeroen MESTERS; Jiří DAMBORSKÝ a Ivana SMATANOVA-KUTÁ. Crystallization and structural analysis of DhaA31 from Rhodococcus rhodochrous. In IX. Discussions in Structural Molecular Biology and Bioinformatics,. 2011.

DAMBORSKÝ, Jiří; Radka CHALOUPKOVÁ a Zbyněk PROKOP. Decontamination kit Yperzyme. 2011.

PRUDNIKOVA, Tanyana; Radka CHALOUPKOVÁ; Yukari SATO; Yuji NAGATA; O. DEGTJARIK; Michal KUTÝ; P. REZACOVA; Jiří DAMBORSKÝ a Smatanova I. KUTA-SMATANOVÁ. Development of a Crystallization Protocol for the DbeA1 Variant of Novel Haloalkane Dehalogenase from Bradyrhizobium elkani USDA94. Crystal Growth & Design. 2011, roč. 11, č. 2, s. 516-519. ISSN 1528-7483. Dostupné z: https://doi.org/10.1021/cg1013363.

BREZOVSKÝ, Jan; Veronika ŠTĚPÁNKOVÁ; Morteza KHABIRI; Antonín PAVELKA; Radka CHALOUPKOVÁ; Rudiger ETTRICH a Jiří DAMBORSKÝ. Effects of Organic Co-Solvents on Enzyme Activity: In Silico Analysis. In 3Dsig 2011, Structural Bioinformatics and Computational Biophysics,. 2011.

PLEŠKOVÁ, Veronika; Tomáš KAŠPAROVSKÝ; Michal OBOŘIL; Nikola PTÁČKOVÁ; Radka CHALOUPKOVÁ; Ladislav DOKLÁDAL; Jiří DAMBORSKÝ a Jan LOCHMAN. Elicitine-membrane interaction is driven by a positive charge on the protein surface: Role of Lys13 residue in lipids loading and resistance induction. Plant Physiology and Biochemistry. Elsevier, 2011, roč. 49, č. 3, s. 321-328. ISSN 0981-9428. Dostupné z: https://doi.org/10.1016/j.plaphy.2011.01.008.

CHALOUPKOVÁ, Radka. Medium and protein engineering for improvement of biocatalysis in non-conventional media. 2011.

ŠTĚPÁNKOVÁ, Veronika; Radka CHALOUPKOVÁ; M. KHABIRI; Jan BREZOVSKÝ; Zbyněk PROKOP; Rudiger ETTRICH a Jiří DAMBORSKÝ. Molecular mechanisms of the effects of organic solvents on activity of haloalkane dehalogenases. 2011.

ŠTĚPÁNKOVÁ, Veronika; Radka CHALOUPKOVÁ; Morteza KHABIRI; Jan BREZOVSKÝ; Zbyněk PROKOP; Rudiger ETTRICH a Jiří DAMBORSKÝ. Molekulární podstata působení organických rozpouštědel na strukturu a funkci haloalkandehalogenáz. 2011.

DAMBORSKÝ, Jiří; Radka CHALOUPKOVÁ a Zbyněk PROKOP. Recombinant enzyme haloalkane dehalogenase DmxA. 2011.

DAMBORSKÝ, Jiří; Radka CHALOUPKOVÁ a Zbyněk PROKOP. Recombinant enzyme haloalkane dehalogenase DpcA. 2011.

DAMBORSKÝ, Jiří; Radka CHALOUPKOVÁ a Zbyněk PROKOP. Recombinant enzyme haloalkane dehalogenase Spur. 2011.

CHALOUPKOVÁ, Radka; Zbyněk PROKOP; Yukari SATO; Yuji NAGATA a Jiří DAMBORSKÝ. Stereoselectivity and Conformational Stability of Haloalkane Dehalogenase DbjA from Bradyrhizobium japonicum USDA110: The Effect of pH and Temperature. FEBS Journal. 2011, roč. 278, č. 15, s. 2728-2738. ISSN 1742-464X. Dostupné z: https://doi.org/10.1111/j.1742-4658.2011.08203.x.

MOZGA, Tomáš; T. PRUDNIKOVA; Radka CHALOUPKOVÁ; P. REZACOVA; Yukari SATO; Michal KUTÝ; Zbyněk PROKOP; Yuji NAGATA; Ivana KUTÁ-SMATANOVÁ a Jiří DAMBORSKÝ. Biochemical and structural characterization of novel haloalkane dehalogenase DbeA from Bradyrhizobium elkani USDA94 possesing two halide binding sites. In 8th Discussion in Structural Molecular Biology and Bioinformatics. 2010.

BIDMANOVÁ, Šárka; Zbyněk PROKOP; Radka CHALOUPKOVÁ a Jiří DAMBORSKÝ. CONSTRUCTION AND CHARACTERIZATION OF FIBER-OPTIC BIOSENSOR BASED ON HALOALKANE DEHALOGENASE. In Europt(r)ode X. 2010.

STSIAPANAVA, A.; Radka CHALOUPKOVÁ; Andrea FOŘTOVÁ; J.R. MESTERS; J. BRYNDA; Jiří DAMBORSKÝ a Ivana KUTÁ-SMATANOVÁ. Crystallization and preliminary X-ray analysis of DhaA wild type and DhaA13 proteins from Rhodococcus rhodochrous. In 8th Discussion in Structural Molecular Biology and Bioinformatics. 2010.

BIDMANOVÁ, Šárka; Radka CHALOUPKOVÁ; Jiří DAMBORSKÝ a Zbyněk PROKOP. Development of an enzymatic fiber-optic biosensor for detection of halogenated hydrocarbons. Analytical and Bioanalytical Chemistry. Springer-Verlag, 2010, roč. 10, č. 1007, s. 1891-1898. ISSN 1618-2642.

ŠTĚPÁNKOVÁ, Veronika; Radka CHALOUPKOVÁ; Morteza KHABIRI; Minofar BABÁK; Zbyněk PROKOP; R. ETTRICH a Jiří DAMBORSKÝ. Effect of organic solvents on structure and function of haloalkane dehalogenases. In 8th Discussion in Structural Molecular Biology and Bioinformatics. 2010.

PROKOP, Zbyněk; Yukari SATO; Jan BREZOVSKÝ; Tomáš MOZGA; Radka CHALOUPKOVÁ; Táňa KOUDELÁKOVÁ; Petr JEŘÁBEK; Veronika ŠTĚPÁNKOVÁ; Ryo NATSUME; J.G.E LEEUWEN; D.B. JANSSEN; Jan FLORIAN; Yuji NAGATA; Toshiya SENDA a Jiří DAMBORSKÝ. Enantioselectivity of Haloalkane Dehalogenases and its Modulation by Surface Loop Engineering. In Trends in Enzymology. 2010.

PROKOP, Zbyněk; Yukari SATO; Jan BREZOVSKÝ; Tomáš MOZGA; Radka CHALOUPKOVÁ; Táňa KOUDELÁKOVÁ; Petr JEŘÁBEK; Veronika ŠTĚPÁNKOVÁ; Rio NATSUME; J.G.E. LEEWEN; D,B. JANSSEN; J. FLORIAN; Yuji NAGATA; T. SENDA a Jiří DAMBORSKÝ. Enantioselectivity of Haloalkane Dehalogenases and its Modulation by Surface Loop Engineering. Angewandte Chemie International Edition. Wiley-VCH Verlag GmbH & Co. KGaA, Weinhe, 2010, roč. 49, č. 35, s. 6111-6115. ISSN 1433-7851.

PROKOP, Zbyněk; Andrea FOŘTOVÁ; Radka CHALOUPKOVÁ; Martina PAVLOVÁ; Eva CHOVANCOVÁ; Jan BREZOVSKÝ; Martin KLVAŇA; Táňa KOUDELÁKOVÁ; Tomáš MOZGA; Antonín PAVELKA; Pavel DVOŘÁK; Monika STRAKOVÁ a Jiří DAMBORSKÝ. Engineering of Biocatalysts by Modification of Access Tunnels. In Novel Enzymes. 2010.

DAMBORSKÝ, Jiří; Zbyněk PROKOP; Radka CHALOUPKOVÁ; Eva CHOVANCOVÁ; Táňa KOUDELÁKOVÁ; Jan BREZOVSKÝ; Veronika ŠTĚPÁNKOVÁ; Antonín PAVELKA a Pavel DVOŘÁK. Engineering of Enzymes by Modification of Access Tunnels. In GEM 2010. 2010.

HASAN, Khomaini; Táňa KOUDELÁKOVÁ; Andrea FOŘTOVÁ; Radka CHALOUPKOVÁ; Yuji NAGATA; Jiří DAMBORSKÝ a Zbyněk PROKOP. Haloalkane dehalogenase from Agrobacterium tumefaciens C58 with new halide-stabilising residues and unique kinetics. In Trends in Enzymology. 2010.

ŠTĚPÁNKOVÁ, Veronika; Radka CHALOUPKOVÁ; Jan BREZOVSKÝ; Morteza KHABIRI; R. ETTRICH a Jiří DAMBORSKÝ. How do organic solvents affecthaloalkane dehalogenases of haloalkane dehalogenases? In XIV. Setkání biochemiků a molekulárních biologů. 2010.

DRIENOVSKÁ, Ivana; Andrea FOŘTOVÁ; Radka CHALOUPKOVÁ a Jiří DAMBORSKÝ. Characterization of novel haloalkane dehalogenase DhcA from extremophilic microorganism Hahella chejuensis KCTC 2396. In GEM 2010. 2010.

DVOŘÁK, Pavel; Martina PAVLOVÁ; Martin KLVAŇA; Jan BREZOVSKÝ; Radka CHALOUPKOVÁ; Ivana VOLFOVÁ a Jiří DAMBORSKÝ. Increasing activity of bacterial biocatalyst with toxic anthropogenic substrate using methods of protein engineering. In 25th International Symposium on Microscale Bioseparations,. 2010.

BIEDERMANNOVÁ, Lada; Zbyněk PROKOP; Radka CHALOUPKOVÁ; Pavel DVOŘÁK; Jiří DAMBORSKÝ a R. WADE. Investigation of Ligand Passage in Proteins Investigation of Ligand Passage in Proteins. In Computational Chemistry. 2010.

HASAN, Khomaini; Táňa KOUDELÁKOVÁ; Andrea FOŘTOVÁ; Radka CHALOUPKOVÁ; Yuji NAGATA; Jiří DAMBORSKÝ a Zbyněk PROKOP. Kinetics and enantioselectivity of haloalkane dehalogenase from Agrobacterium tumefaciens c58. In XIV. Setkání biochemiků a molekulárních biologů. 2010.

BIDMANOVÁ, Šárka; Zbyněk PROKOP; Radka CHALOUPKOVÁ a Jiří DAMBORSKÝ. Optical biosensor based on haloalkane dehalogenase for detection of halogenated hydrocarbons in the environment. In Biosensors. 2010.

VEJVODA, Vojtech; David KUBAC; Alzbeta DAVIDOVA; Ondrej KAPLAN; Miroslav SULC; Ondrej SVEDA; Radka CHALOUPKOVÁ a Ludmila MARTINKOVA. Purification and characterization of nitrilase from Fusarium solani IMI196840. Process Biochemistry. Oxford: ELSEVIER SCI LTD, 2010, roč. 45, č. 7, s. 1115-1120. ISSN 1359-5113. Dostupné z: https://doi.org/10.1016/j.procbio.2010.03.033.

ALTMANNOVÁ, Veronika; Nadine ECKERT-BOULET; Milica ARNERIC; Peter KOLESÁR; Radka CHALOUPKOVÁ; Jiří DAMBORSKÝ; Patrick SUNG; Xiaolan ZHAO; Michael LISBY a Lumír KREJČÍ. Rad52 SUMOylation affects the efficiency of the DNA repair. Nucleic Acids Research. Oxford University Press, 2010, roč. 38, č. 6, 9 s. ISSN 0305-1048.

ŠTĚPÁNKOVÁ, Veronika; Radka CHALOUPKOVÁ; Morteza KHABIRI; Minofar BABAK; Zbyněk PROKOP; R. ETTRICH a Jiří DAMBORSKÝ. Struktura a funkce haloalkándehalogenas v organických rozpouštědlech. 2010.

PRUDNIKOVA, T.; Tomáš MOZGA; P. REZACOVA; Radka CHALOUPKOVÁ; Yukari SATO; Yuji NAGATA; Y. BRYNDA; Michal KUTÝ; Jiří DAMBORSKÝ a Ivana KUTÁ-SMATANOVÁ. Crystallization and Preliminary X-ray Analysis of a Novel Haloalkane Dehalogenase DbeA from Bradyrhizobium elkani USDA94. Acta crystallographica. Section F Structural biology and crystallization communications. 2009, F65, č. 1, s. 353-356. ISSN 1744-3091.

PAVLOVÁ, Martina; Martin KLVAŇA; Radka CHALOUPKOVÁ; Pavel BANÁŠ; Michal OTYEPKA; Rebecca WADE; Yuji NAGATA a Jiří DAMBORSKÝ. Design and Evolution of Haloalkane Dehalogenase with Enhanced Conversion of 1,2,3-Trichloropropane by Modification of Access Tunnels. Nature Chemical Biology. Nature Chemical Biology, 2009, roč. 5, xx, s. 727-733. ISSN 1552-4450.

JESENSKÁ, Andrea; Marta MONINCOVÁ; Táňa KOUDELÁKOVÁ; Khomaini HASAN; Radka CHALOUPKOVÁ; Zbyněk PROKOP; Z. GEERLOF a Jiří DAMBORSKÝ. Characterization of Haloalkane Dehalogenases DrbA and DmbC: Representatives of Novel Subfamily. Applied and Environmental Microbilogy. 2009, roč. 75, č. 15, s. 5157-5160. ISSN 0099-2240.

MOZGA, Tomáš; Zbyněk PROKOP; Radka CHALOUPKOVÁ a Jiří DAMBORSKÝ. Chiral Aliphatic Hydroxy Compounds in Nature: a Review of Biological Functions and Practical Applications. Collection of Czechoslovak chemical communications. 2009, roč. 74, 7-8, 83 s. ISSN 0010-0765.

MACEK, Pavel; Josef CHMELÍK; Ivana KŘÍŽOVÁ; Pavel KADEŘÁVEK; Petr PADRTA; Lukáš ŽÍDEK; Marcela WILDOVÁ; Romana HADRAVOVÁ; Radka CHALOUPKOVÁ; Iva PICHOVÁ; Tomáš RUML; Michaela RUMLOVÁ a Vladimír SKLENÁŘ. NMR Structure of the N-Terminal Domain of Capsid Protein from the Mason-Pfizer Monkey Virus. Journal of Molecular Biology. 2009, roč. 392, č. 1, s. 100-114. ISSN 0022-2836.

KLVAŇA, Martin; Martina PAVLOVÁ; Táňa KOUDELÁKOVÁ; Radka CHALOUPKOVÁ; Pavel DVOŘÁK; Zbyněk PROKOP; A. STSIAPANAVA; Michal KUTÝ; Ivana KUTÁ-SMATANOVÁ; J. DOHNÁLEK; Petr KULHÁNEK; R. WADE a Jiří DAMBORSKÝ. Pathways and Mechanisms for Product Release in the Engineered Haloalkane Dehalogenases Explored using Classical and Random Acceleration Molecular Dynamics Simulations. JOURNAL OF MOLECULAR BIOLOGY. 2009, roč. 2009, č. 00, s. 0000-0000, 10 s. ISSN 0022-2836.

PAVLOVÁ, Martina; Martin KLVAŇA; Radka CHALOUPKOVÁ; Pavel BANÁŠ; Michal OTYEPKA; R. WADE; Yuji NAGATA a Jiří DAMBORSKÝ. Redesigning Dehalogenase Access Tunnels as a Strategy for Degrading an Anthropogenic Substrate. NATURE CHEMICAL BIOLOGY. 2009, roč. 0000, č. 5, s. 727-733, 8 s. ISSN 1552-4450.

BIDMANOVÁ, Šárka; Zbyněk PROKOP; Radka CHALOUPKOVÁ; G. KUNCOVÁ; J. BOLYÓ a Jiří DAMBORSKÝ. Development of Enzyme Biosensors for Detection of Toxic Halogenated Compounds. 2008.

MIKELOVÁ, Radka; Zbyněk PROKOP; Karel STEJSKAL; Vojtěch ADAM; Miroslava BEKLOVÁ; Libuše TRNKOVÁ; Bohumila KULICHOVÁ; A. HORNA; Radka CHALOUPKOVÁ; Jiří DAMBORSKÝ a René KIZEK. Enzymatic reaction coupled with flow-injection analysis with charged aerosol, coulometric, or amperometric detection for estimation of contamination of the environment by pesticides. Chromatographia. 2008, roč. 67, č. 01, s. 47-53. ISSN 0009-5893.

DOPITOVÁ, Radka; Pavel MAZURA; Lubomír JANDA; Radka CHALOUPKOVÁ; Petr JEŘÁBEK; Jiří DAMBORSKÝ; Tomáš FILIPI; Nagavalli S. KIRAN a Břetislav BRZOBOHATÝ. Functional analysis of the aglycone - binding site of the maize beta-glucosidase Zm-p60.1. FEBS Journal. 2008, roč. 275, č. 24, s. 6123-6135. ISSN 1742-464X.

HASAN, Khomaini; Marta MONINCOVÁ; Andrea JESENSKÁ; Radka CHALOUPKOVÁ; Táňa KOUDELÁKOVÁ a Zbyněk PROKOP. Characterization of Haloalkane Dehalogenase DmbC from Mycobacterium tubercul.sis H37Rv,. 2008.

PROKOP, Zbyněk; Martina PAVLOVÁ; Táňa KOUDELÁKOVÁ; Martin KLVAŇA; Tomáš MOZGA; Radka CHALOUPKOVÁ a Jiří DAMBORSKÝ. Inženýrství stereoselektivity enzymů pro aplikace biokatalýzy. 2008.

BREZOVSKÝ, Jan; Zbyněk PROKOP; Yukari SATO; J. FLORIÁN; Tomáš MOZGA; Radka CHALOUPKOVÁ; Táňa KOUDELÁKOVÁ; Petr JEŘÁBEK; Rio NATSUME; D.B. JANSSEN; Yuji NAGATA; T. SENDA a Jiří DAMBORSKÝ. Modulation of Enantioselectivity in Haloalkane Dehalogenase DbjA by Engineering of a Surface Loop. 2008.

KLVAŇA, Martin; Martina PAVLOVÁ; Táňa KOUDELÁKOVÁ; Radka CHALOUPKOVÁ; Radka CHALOUPKOVÁ; Alena STSIAPANAVA; Michal KUTÝ; Ivana KUTÁ-SMATANOVÁ; J. DOHNÁLEK; Petr KULHÁNEK; R.C. WADE a Jiří DAMBORSKÝ. Pathways and Mechanisms for Product Exit and Water Exchange in Engineered Haloalkane Dehalogenase DhaA Exploredusing Classical and Random Acceleration Molecular Dynamics Simulations. 2008.

HOLUB, Peter; Martina PAVLOVÁ; Martin KLVAŇA; Zbyněk PROKOP; Radka CHALOUPKOVÁ; Aaron OAKLEY; M. TSUDA; Yuji NAGATA a Jiří DAMBORSKÝ. Protein Engineering of Haloalkane Dehalogenases: Towards the Change of Reaction Mechanism. 2008.

DAMBORSKÝ, Jiří; Radka CHALOUPKOVÁ; Martina PAVLOVÁ; Eva CHOVANCOVÁ a Jan BREZOVSKÝ. Structure-Function Relationships and Engineering of Haloalkane Dehalogenases. In Handbook of Hydrocarbon and Lipid Microbiology. 1. vyd. Heidelberg: Springer, 2008, s. 1081-1098. Handbooks, 1. ISBN 978-3-540-77584-3.

CHALOUPKOVÁ, Radka; Zbyněk PROKOP; Tomáš MOZGA; Yukari SATO; Táňa KOUDELÁKOVÁ; D.B. JANSSEN; Yuji NAGATA; T. SENDA a Jiří DAMBORSKÝ. Thermodynamic Analysis of Enantioselectivity of Haloalkane Dehalogenase DbjA and its Variants DbjA and DbjA+H139A towards Brominated Esters and substituted Bromoalkanes. 2008.

DAMBORSKÝ, Jiří; Zbyněk PROKOP; Radka CHALOUPKOVÁ; Veronika ŠTĚPÁNKOVÁ; M. OLŠANSKÁ a F. OPLUŠTIL. Enzymatic Detoxification of Sulfur Mustard by Haloalkane Dehalogenases. 2007.

FOHLEROVÁ, Radka; Pavel MAZURA; Lubomír JANDA; Radka CHALOUPKOVÁ; Petr JEŘÁBEK; Jiří DAMBORSKÝ a Břetislav BRZOBOHATÝ. Functional analysis of aglycone-binding site of the maize beta-glucosidase Zm-p60.1. In IPGSA 19th Annual Meeting-Abstracts. 2007.

FOHLEROVÁ, Radka; Pavel MAZURA; Lubomír JANDA; Radka CHALOUPKOVÁ; Petr JEŘÁBEK; Jiří DAMBORSKÝ a Břetislav BRZOBOHATÝ. Funkční analýza aglykon-vazebného místa kukuřičné beta-glukozidázy Zm-p60.1. In Bulletin České společnosti experimentální biologie rostlin a Fyziologické sekce Slovenské botanické společnosti. Olomouc: Česká společnost experimentální biologie rostlin, 2007, s. 106-106, 143 s. ISSN 1213-6670.

CHALOUPKOVÁ, Radka; Zbyněk PROKOP; Monika STRAKOVÁ; Tomáš MOZGA a Jiří DAMBORSKÝ. Stereoselectivity and Conformational Stability of Haloalkane Dehalogenase DbjA from Bradyrhizobium japonicum USDA110: The effect of temperature and pH. 2007.

CHALOUPKOVÁ, Radka; Zbyněk PROKOP; Monika STRAKOVÁ; Yukari SATO; Yuji NAGATA a Jiří DAMBORSKÝ. Stereoselektivita a konformační stabilita halogenalkan dehalogenázy DbjA z Bradyrhizobium japonicum USDA110,. 2007.

PAPEŽOVÁ, Kateřina; Tomáš NĚMEC; Radka CHALOUPKOVÁ a Zdeněk GLATZ. Study of substrate inhibition by electrophoretically mediated microanalysis in partially filled capillary. Journal of Chromatography A. Amsterdam: Elsevier, 2007, roč. 1150, 1-2, s. 327-331. ISSN 0021-9673.

JANDERKA, Pavel a Radka CHALOUPKOVÁ. Use of Mass Spectrometer for Solid Sample Analysis. In 8th Advanced Batteries and Accumulators, Book of extended abstracts. 1. vyd. Brno: Brno Univ. of Technology, 2007, s. 264-267, 5 s. ISBN 978-80-214-3424-0.

PROKOP, Zbyněk; Radka CHALOUPKOVÁ; Martina PAVLOVÁ; Marta MONINCOVÁ; Michal STROUHAL; V. VELEBNÝ a Jiří DAMBORSKÝ. Využití enzymů ve farmaceutických výrobách. 2007.

CHALOUPKOVÁ, Radka. ward of the Rector of the Masaryk University. 2007.

NAKAMURA, Takashi; Marcel ZAMOCKY; Zbyněk ZDRÁHAL; Radka CHALOUPKOVA; Marta MONINCOVÁ; Zbyněk PROKOP; Yuji NAGATA a Jiří DAMBORSKÝ. Expression of Glycosylated Haloalkane Dehalogenase LinB in Pichia pastoris. PROTEIN EXPRESSION AND PURIFICATION. 2006, roč. 1/2006, č. 46, s. 85-91. ISSN 1046-5928.

NAKAMURA, T.; Marcel ZÁMOCKÝ; Zbyněk ZDRÁHAL; Radka CHALOUPKOVÁ; Marta MONINCOVÁ; Zbyněk PROKOP; Yuji NAGATA a Jiří DAMBORSKÝ. Expression of Haloalkane Dehalogenase LinB in Pichia pastoris. 2006.

MONINCOVÁ, Marta; Andrea FOŘTOVÁ; Radka CHALOUPKOVÁ; Yukari SATO; Zbyněk PROKOP a Jiří DAMBORSKÝ. High-throughput characterization of enzymes from genomic and proteomic projects-multivariate statistical approach. In Materials Structure in Chemistry, Biology, Physics and Technology. 2006.

FOŘTOVÁ, Andrea; Martina PAVLOVÁ; Martin KLVAŇA; Radka CHALOUPKOVÁ; Marta MONINCOVÁ; T. SATO; M. TSUDA; Yuji NAGATA a Jiří DAMBORSKÝ. Mycobacteria as a Source of Haloalkane Dehalogenases: Identification of the Catalytic Pentad within the Structure of DhmA from Mycobacterium avium N85. 2006.

CHALOUPKOVÁ, Radka; Zbyněk PROKOP; Monika STRAKOVÁ; Tomáš MOZGA a Jiří DAMBORSKÝ. Physical Variables as a Control of Enzyme Stereoselectivity. 2006.

MONINCOVÁ, Marta; Yuji NAGATA; Radka CHALOUPKOVÁ; Zbyněk PROKOP; Andrea FOŘTOVÁ; Martina PAVLOVÁ; Masataka TSUDA a Jiří DAMBORSKÝ. Protein engineering of haloalkane dehalogenase LinB: reconstruction of active site and modification of entrance tunnel. In Book of Abstracts, 10th International Symposium of the Genetics of Industrial Microorganisms. 1. vyd. Praha: Institute of Microbiology ASCR, 2006, s. 160-161. ISBN 80-239-7323-1.

CHALOUPKOVÁ, Radka; Zbyněk PROKOP; Monika STRAKOVÁ; Tomáš MOZGA a Jiří DAMBORSKÝ. Řízení stereoselektivity enzymu fyzikálně-chemickými parametry. 2006.

PAPAJAK, Ewa; Zbyněk PROKOP; Radka CHALOUPKOVÁ; Jiří DAMBORSKÝ a Piotr PANETH. Solvent Isotope Effects on Haloalkane Dehalogenase LinB. 2006.

MONINCOVÁ, Marta; Radka CHALOUPKOVÁ; Yuji NAGATA; Zbyněk PROKOP; Soňa MARVANOVÁ; Jana SÝKOROVÁ; Andrea JESENSKÁ; Martina PAVLOVÁ; M. TSUDA a Jiří DAMBORSKÝ. Structure-Based Engineering of Haloalkane Dehalogenase. 2006.

CHALOUPKOVÁ, Radka; Zbyněk PROKOP; Monika STRAKOVÁ; Tomáš MOZGA a Jiří DAMBORSKÝ. The stereoselectivity and Conformational Stability of Haloalkane Dehalogenase DbjA from Bradyrhizobium japonicum USDA110: The Effect of Temperature and pH. 2006.

LOCHMAN, Jan; Tomáš KAŠPAROVSKÝ; Jiří DAMBORSKÝ; Hanan OSMAN; MIchel PONCHET; Vladimír MIKEŠ a Radka CHALOUPKOVÁ. Construction of Cryptogein Mutants, a Proteinaceous Elicitor from Phytophthora, with Altered Abilities To Induce a Defense Reaction in Tobacco Cells. Biochemistry. USA, 2005, roč. 44, č. 17, s. 6565-6577. ISSN 0006-2960.

JESENSKÁ, Andrea; Martina PAVLOVÁ; Michal STROUHAL; Radka CHALOUPKOVÁ; Iva TĚŠÍNSKÁ; Marta MONINCOVÁ; Zbyněk PROKOP; Milan BARTOŠ; Ivo PAVLÍK; Ivan RYCHLÍK; Petra MOBIUS; Yuji NAGATA a Jiří DAMBORSKÝ. Mycobacterial Haloalkane Dehalogenases: Cloning, Biochemical Properties and distribution. Applied and Environmental Microbiology. 2005, roč. 71, č. 11, s. 6736-6745. ISSN 0099-2240.

SATO, Yukari; Marta MONINCOVÁ; Radka CHALOUPKOVÁ; Zbyněk PROKOP; Yoshiyuki OHTSUBO; Kiwamu MINAMISAWA; Masataka TSUDA; Jiří DAMBORSKÝ a Yuji NAGATA. Two Rhizobial Strains, Mesorhizobium loti MAFF303099 and Bradyrhizobium japonicum USDA110, Encode Haloalkane Dehalogenases with Novel Structures and Substrate Specificities. APPLIED AND ENVIRONMENTAL MICROBIOLOGY. 2005, roč. 71, č. 8, s. 43724379-43724386. ISSN 0099-2240.

PROKOP, Zbyněk; Marta MONINCOVÁ; Radka CHALOUPKOVÁ; Martin KLVAŇA; Yuji NAGATA; Dick B. JANSSEN a Jiří DAMBORSKÝ. Catalytic mechanism of the haloalkane dehalogenase LinB from Sphingomonas paucimobilis UT26. Journal of Biological Chemistry. 2003, roč. 278, č. 46, s. 45094-45100. ISSN 0021-9258.

CHALOUPKOVÁ, Radka; Jana SÝKOROVÁ; Zbyněk PROKOP; Andrea JESENSKÁ; Marta MONINCOVÁ; Martina PAVLOVÁ; Masataka TSUDA; Yuji NAGATA a Jiří DAMBORSKÝ. Modification of Activity and Specificity of Haloalkane Dehalogenase from Sphingomonas paucimobilis UT26 by Engineering of its Entrance Tunnel. Journal of Biological Chemistry. 2003, roč. 278, č. 52, s. 52622-52628. ISSN 1083-351X.

DRBÁLKOVÁ, Eva; Pavel JANDERKA a Radka CHALOUPKOVÁ. Detekce těkavých a částečně těkavých meziproduktů a produktů elektrochemických procesů hmotnostní spektrometrií. In Proceedens of the 18th Informal Meeting on Mass Spectrometry. 1. vyd. Praha: Ioaness Marcus Marci Spectroscopic Society, 2000, s. 87. ISBN 80-238-5344-9.