Výpis publikací

SMOLNICKÁ, Anna, Břetislav LIPOVÝ, Veronika PAVLIŇÁKOVÁ, Lucy VOJTOVÁ, Jakub HOLOUBEK, Martin FALDYNA, Edita JEKLOVÁ a Irena KOUTNÁ. Cell-mediated multilayered 4th generation biomimetic scaffold for single-step total skin substitute: from laboratory to clinical application. In 23rd Interdisciplinary Meeting of Young Biologists, Biochemists, and Chemists, Milovy, 2024. 2024. ISSN 2336-7210.

PAVLIŇÁKOVÁ, Veronika, Daniel IZSÁK, Břetislav LIPOVÝ, Martin KNOZ, Anna SMOLNICKÁ, Martin FALDYNA, Edita JEKLOVÁ, Irena KOUTNÁ a Lucy VOJTOVÁ. Development of a Multilayered 4th Generation Scaffold for Advanced Total Skin Substitutes. In XV. mezinárodní konferenci Bioimplantologie a regenerativní medicíny. 2024. ISBN 978-80-01-07293-6.

DLUGOŠOVÁ, Slavomíra, Jana DVOŘÁKOVÁ, Vladimír PROKS a Irena KOUTNÁ. Hyaline Cartilage Tissue Engineering: 3D Culture of Autologous Chondrocytes in Biodegradable Hydrogels. In XV. mezinárodní konferenci Bioimplantologie a regenerativní medicína, Lednice, 2024. 2024.

SMOLNICKÁ, Anna, Břetislav LIPOVÝ, Veronika PAVLIŇÁKOVÁ, Jakub HOLOUBEK, Martin FALDYNA, Edita JEKLOVÁ, Lucy VOJTOVÁ a Irena KOUTNÁ. Multilayered cellular skin substitute with biomimetic collagen-chitosan scaffold. In XV. mezinárodní konferenci Bioimplantologie a regenerativní medicíny. 2024. ISBN 978-80-01-07293-6.

SOURALOVÁ, Tereza, Katarína ČIMBOROVÁ, Vendula PELKOVÁ, Aleš HAMPL a Irena KOUTNÁ. Quality Control of Human Pluripotent Stem Cell-Derived Retinal Pigment Epithelium Cells for Regenerative Therapy. In XV. mezinárodní konferenci Bioimplantologie a regenerativní medicína, Lednice. 2024. ISBN 978-80-01-07293-6.

SOURALOVÁ, Tereza, Daniela HULÍNOVÁ, Pavel VENTRUBA, Michal JEŠETA, Aleš HAMPL a Irena KOUTNÁ. Truncated vitronectin with e-cadherin enables the xeno-free derivation ofhuman embryonic stem cells. In 23rd Interdisciplinary Meeting of Young Biologists, Biochemists, and Chemists, Milovy. 2024.

HLADÍK, Martin, Břetislav LIPOVÝ, Serhij FOROSTYAK, Jakub HOLOUBEK, Lucy VOJTOVÁ, Marián SEDLÁŘ, Katarína KACVINSKÁ, Svenja THEINER, Edita JEKLOVÁ a Irena KOUTNÁ. A novel biological wound dressing based on perinatal tissues: in vivo experiment on porcine animal model. In 14th Meeting of the European Plastic Surgery Research Council, Geneva, Switzerland. 2023.

DLUGOŠOVÁ, Slavomíra, Zuzana KAŇOVSKÁ a Irena KOUTNÁ. FLOW CYTOMETRIC ANALYSIS OF NORMAL AND OSTEOARTHRITIC CHONDROCYTES. In 12th International Conference Analytical Cytometry, Prague, Czech Republic. 2023.

LIORNI, Niccolo, Alessandro NAPOLI, Stefano CASTELLANA, Sebastiano GIALLONGO, Daniela HULÍNOVÁ, Oriana LO RE, Irena KOUTNÁ, Tommaso MAZZA a Manlio VINCIGUERRA. Integrative CUT&Tag-RNA-Seq analysis of histone variant macroH2A1-dependent orchestration of human induced pluripotent stem cell reprogramming. Epigenomics. Future Medicine Ltd, 2023, roč. 15, č. 17, s. 863-877. ISSN 1750-1911. Dostupné z: https://dx.doi.org/10.2217/epi-2023-0267.

SOURALOVÁ, Tereza, Pavel VENTRUBA, Michal JEŠETA, Daniela ŘEHÁKOVÁ, Aleš HAMPL a Irena KOUTNÁ. Quality control of clinical-grade human embryonic stem cells. In Standardizing Stem Cell Core Facilities in Europe: a CorEuStem Symposium, Lisbon, Portugal. 2023.

LIPOVÝ, Břetislav, Martin KNOZ, Jakub HOLOUBEK, Eva HORÁLKOVÁ, Veronika PAVLIŇÁKOVÁ, Martin FALDYNA, Edita JEKLOVÁ, Radka CHALOUPKOVÁ, Zdeněk PAVLOVSKÝ, Irena KOUTNÁ a Lucy VOJTOVÁ. Stable Fibroblast Growth Factor 2 and its role in research from dermal regeneration to total skin substitute. In Recent Advances in Surgery and Burns, Kızılcahamam, Ankara, Turkey. 2023.

HULÍNOVÁ, Daniela, Šimon FARKAŠ, Aleš HAMPL, Miloslava FOJTOVÁ a Irena KOUTNÁ. Telomere Length In Human Pluripotent Stem Cells. In ISSCR Annual meeting 2023, Boston, USA. 2023.

VENTRUBA, Tomáš, Pavel VENTRUBA, Michal JEŠETA, Jana ŽÁKOVÁ, Eva LOUSOVÁ, Igor CRHA, Tereza SOURALOVÁ, Irena KOUTNÁ a Aleš HAMPL. The contribution of donated human embryos suitable for the production of embryonic stem cells to increase the quality of life: Selection and preparation of embryos in the Czech Republic. Advances in Clinical and Experimental Medicine. WROCLAW: WROCLAW MEDICAL UNIV, 2023, roč. 32, č. 8, s. 901-907. ISSN 1899-5276. Dostupné z: https://dx.doi.org/10.17219/acem/158777.

SOURALOVÁ, Tereza, Daniela HULÍNOVÁ, Michal JEŠETA, Pavel VENTRUBA, Aleš HAMPL a Irena KOUTNÁ. Truncated vitronectin with E-cadherin enables the xeno-free derivation of human embryonic stem cells. Scientific Reports. BERLIN: NATURE PORTFOLIO, 2023, roč. 13, č. 1, s. 1-9. ISSN 2045-2322. Dostupné z: https://dx.doi.org/10.1038/s41598-023-42236-5.

SOURALOVÁ, Tereza, Daniela HULÍNOVÁ, Michal JEŠETA, Pavel VENTRUBA, Aleš HAMPL a Irena KOUTNÁ. Vitronectin is a xeno-free and defined surface for the derivation of human embryonic stem cells. In ISSCR Annual meeting 2023, Boston, USA. 2023.

SOURALOVÁ, Tereza, Pavel VENTRUBA, Michal JEŠETA, Daniela ŘEHÁKOVÁ, Aleš HAMPL a Irena KOUTNÁ. CLINICAL-GRADE HUMAN EMBRYONIC STEM CELLS. In the XXI. Interdisciplinary Meeting of Young Biologists, Biochemists and Chemists, Milovy, Czech Republic. 2022. ISSN 2336-7210.

ŤAPUCHOVÁ, Ivana, Robert PYTLIK, Pavel ŠIMARA, Lenka TESAŘOVÁ a Irena KOUTNÁ. Cytomegalovirus and other herpesviruses after hematopoietic cell and solid organ transplantation: From antiviral drugs to virus-specific T cells. Transplant Immunology. Amsterdam: Elsevier B.V., 2022, roč. 71, April, s. 1-13. ISSN 0966-3274. Dostupné z: https://dx.doi.org/10.1016/j.trim.2022.101539.

SOURALOVÁ, Tereza, Pavel VENTRUBA, Michal JEŠETA, Daniela ŘEHÁKOVÁ, Aleš HAMPL a Irena KOUTNÁ. Establishment of human embryonic stem cells for stem-cell therapies. In SY-STEM 2022, Vienna, Austria. 2022.

GIALLONGO, Sebastiano, Daniela REHAKOVA, Tommaso BIAGINI, Oriana LO RE, Priyanka RAINA, Gabriela LOCHMANOVÁ, Zbyněk ZDRÁHAL, Igor RESNICK, Pille PATA, Illar PATA, Martin MISTRIK, Joao Pedro DE MAGALHAES, Tommaso MAZZA, Irena KOUTNÁ a Manlio VINCIGUERRA. Histone Variant macroH2A1.1 Enhances Nonhomologous End Joining-dependent DNA Double-strand-break Repair and Reprogramming Efficiency of Human iPSCs. Stem Cells. OXFORD: OXFORD UNIV PRESS, 2022, roč. 40, č. 1, s. 35-48. ISSN 1066-5099. Dostupné z: https://dx.doi.org/10.1093/stmcls/sxab004.

SOURALOVÁ, Tereza, Daniela ŘEHÁKOVÁ, Lenka TESAŘOVÁ, Aleš HAMPL a Irena KOUTNÁ. Characterization of Clinical-Grade Stem Cells: Microscopic, Cellular, Molecular, and Functional Characterization of Stem Cells and Their Products According to Regulatory Requirements for FDA Approval. In Firdos Alam Khan. Stem Cell Production. 1. vyd. Singapore: Springer, Singapore, 2022, s. 185-203. Biomedicine & Life Sciences. ISBN 978-981-16-7588-1. Dostupné z: https://dx.doi.org/10.1007/978-981-16-7589-8_8.

NOVOTNA, Lenka, Zdenek CHLUP, Josef JAROŠ, Klára ČÁSTKOVÁ, Daniel DRDLIK, Jakub POSPÍŠIL, Aleš HAMPL, Irena KOUTNÁ a Jaroslav CIHLAR. Macroporous bioceramic scaffolds based on tricalcium phosphates reinforced with silica: microstructural, mechanical, and biological evaluation. JOURNAL OF ASIAN CERAMIC SOCIETIES. ABINGDON: TAYLOR & FRANCIS LTD, 2022, roč. 10, č. 2, s. 356-369. ISSN 2187-0764. Dostupné z: https://dx.doi.org/10.1080/21870764.2022.2053278.

LIPOVÝ, Břetislav, Jakub HOLOUBEK, Martin KNOZ, Eva HORÁLKOVÁ, Martin HLADÍK, Irena KOUTNÁ a Lucy VOJTOVÁ. Od regenerace dermis k regeneraci kůže. In Laboratorní a klinické aspekty regenerativní medicíny. 2022. ISBN 978-80-01-07052-9.

ŘEHÁKOVÁ, Daniela, Aleš HAMPL, Miloslava FOJTOVÁ a Irena KOUTNÁ. Telomere length in human pluripotent stem cells. In SY-Stem 2022. 2022.

SOURALOVÁ, Tereza, Daniela ŘEHÁKOVÁ, Michal JEŠETA, Lenka TESAŘOVÁ, Jindřich BERÁNEK, Pavel VENTRUBA, Aleš HAMPL a Irena KOUTNÁ. The Manufacture of Xeno- and Feeder-Free Clinical-Grade Human Embryonic Stem Cell Lines: First Step for Cell Therapy. International Journal of Molecular Sciences. Basel, Switzerland: MDPI, 2022, roč. 23, č. 20, s. 1-15. ISSN 1422-0067. Dostupné z: https://dx.doi.org/10.3390/ijms232012500.

VENTRUBA, Pavel, Jana ŽÁKOVÁ, Michal JEŠETA, Eva LOUSOVÁ, Aleš HAMPL, Tereza SOURALOVÁ a Irena KOUTNÁ. Aspekty výběru embryí a jejich příprava pro vznik lidských embryonálních kmenových buněk určených k humánní terapii. Česká gynekologie. Praha: Česká lékařská společnost J. E. Purkyně, 2021, roč. 86, č. 1, s. 5-10. ISSN 1210-7832. Dostupné z: https://dx.doi.org/10.48095/cccg20215.

KUČÍREK, Martin, Leoš BENÁK, Jan KOCANDA, Milan FILIPOVIČ, Jan SKLENSKÝ, Libor STREIT, Lenka VEVERKOVÁ, Irena KOUTNÁ, Jaroslav CIHLÁŘ, Aleš HAMPL a Martin REPKO. Bioarteficiální 3D štěp pro meziobratlovou fúzi páteře. 2021.

LUKJANOV, Viktor, Irena KOUTNÁ a Pavel ŠIMARA. CAR T-Cell Production Using Nonviral Approaches. Journal of Immunology Research. London: Hindawi, 2021, roč. 2021, Mar 27, s. 1-9. ISSN 2314-8861. Dostupné z: https://dx.doi.org/10.1155/2021/6644685.

LEJDAROVÁ, Hana, Rita PACASOVA, Lenka TESAROVA, Irena KOUTNA, Nadezda POLOKOVA, Simona MICHLICKOVA a Martin DOLEČEK. Cryopreserved buffy-coat-derived platelets reconstituted in platelet additive solution: A safe and available product with sufficient haemostatic effectiveness. Doleček Martin. TRANSFUSION AND APHERESIS SCIENCE. OXFORD: PERGAMON-ELSEVIER SCIENCE LTD, 2021, roč. 60, č. 3, s. 1-7. ISSN 1473-0502. Dostupné z: https://dx.doi.org/10.1016/j.transci.2021.103110.

SOURALOVÁ, Tereza, Zuzana HOLUBCOVÁ, Drahomíra KYJOVSKÁ, Aleš HAMPL a Irena KOUTNÁ. Derivace lidských embryonálních kmenových buněk za definovaných podmínek. In 31. Kongres asistované reprodukce, Brno, Czech Republic. 2021. ISBN 978-80-907696-4-9.

SOURALOVÁ, Tereza, Zuzana HOLUBCOVÁ, Drahomíra KYJOVSKÁ, Aleš HAMPL a Irena KOUTNÁ. Derivation and characterization of clinical-grade human embryonic stem cells. In XII. international conference „Bioimplantologie 2021“, Mikulov, Czech Republic. 2021. ISBN 978-80-01-06886-1.

SOURALOVÁ, Tereza, Zuzana HOLUBCOVÁ, Drahomíra KYJOVSKÁ, Irena KOUTNÁ a Aleš HAMPL. MUES 6 - Linie lidských embryonálních kmenových buněk. In XXIV. Biologické dny, Brno, Czech Republic. 2021.

GIALLONGO, Sebastiano, Daniela ŘEHÁKOVÁ, Marco RAFFAELE, Oriana LO RE, Irena KOUTNÁ a Manlio VINCIGUERRA. Redox and Epigenetics in Human Pluripotent Stem Cells Differentiation. ANTIOXIDANTS & REDOX SIGNALING. NEW ROCHELLE: MARY ANN LIEBERT, INC, 2021, roč. 34, č. 4, s. 335-349. ISSN 1523-0864. Dostupné z: https://dx.doi.org/10.1089/ars.2019.7983.

ŠIMARA, Pavel, Lenka TESAŘOVÁ, Ivana ŤAPUCHOVÁ, J. CELEROVA a Irena KOUTNÁ. T-Cell Activation: Post-Infection Diagnostic Tool for COVID-19. Folia biologica. Praha: Institute of Molecular Genetics, 2021, roč. 67, č. 1, s. 16-27. ISSN 0015-5500.

SOURALOVÁ, Tereza, Zuzana HOLUBCOVÁ, Drahomíra KYJOVSKÁ, Aleš HAMPL a Irena KOUTNÁ. Xeno- and feeder-free derivation of two sex-discordant sibling lines of human embryonic stem cells. Stem Cell Research. Amsterdam: Elsevier, 2021, roč. 57, December 2021, s. 1-4. ISSN 1873-5061. Dostupné z: https://dx.doi.org/10.1016/j.scr.2021.102574.

ŘEHÁKOVÁ, Daniela, Tereza SOURALOVÁ a Irena KOUTNÁ. Clinical-Grade Human Pluripotent Stem Cells for Cell Therapy: Characterization Strategy. International Journal of Molecular Sciences. Basel: MDPI, 2020, roč. 21, č. 7, s. 1-14. ISSN 1422-0067. Dostupné z: https://dx.doi.org/10.3390/ijms21072435.

FARKAŠ, Šimon, Pavel ŠIMARA, Daniela ŘEHÁKOVÁ, Lenka VEVERKOVÁ a Irena KOUTNÁ. Endothelial Progenitor Cells Produced From Human Pluripotent Stem Cells by a Synergistic Combination of Cytokines, Small Compounds, and Serum-Free Medium. Frontiers in Cell and Developmental Biology. Lausanne: Frontiers Media S.A., 2020, roč. 8, č. 309, s. 1-15. ISSN 2296-634X. Dostupné z: https://dx.doi.org/10.3389/fcell.2020.00309.

TESAŘOVÁ, Lenka, Klára JAREŠOVÁ, Pavel ŠIMARA a Irena KOUTNÁ. Umbilical Cord-Derived Mesenchymal Stem Cells Are Able to Use bFGF Treatment and Represent a Superb Tool for Immunosuppressive Clinical Applications. International Journal of Molecular Sciences. Basel: Multidisciplinary Digital Publishing Institute, 2020, roč. 21, č. 15, s. 1-27. ISSN 1422-0067. Dostupné z: https://dx.doi.org/10.3390/ijms21155366.

ŠIMARA, Pavel, Viktor LUKJANOV, Pavel OTÁHAL a Irena KOUTNÁ. Virus-free production of CAR T-cells for the treatment of solid tumors. In CAR-TCR Europe Summit. 2020.

VENTRUBA, Pavel, Jana ŽÁKOVÁ, Michal JEŠETA, Eva LOUSOVÁ, Aleš HAMPL, Irena KOUTNÁ a Tereza SOURALOVÁ. Výběr a příprava embryí pro vznik lidských embryonálních kmenových buněk určených k humánní terapii. In 30. sympozium asistované reprodukce SAR ČGPS ČLS JEP a 19. česko–slovenská konference reprodukční gynekologie, Brno, Czech Republic. 2020.

SOURALOVÁ, Tereza, Aleš HAMPL, Irena KOUTNÁ a Pavel VENTRUBA. Clinical grade human embryonic stem cells: derivation and characterization. In 29. sympozium asistované reprodukce a 18. česko-slovenská konference reprodukční gynekologie, Brno, Czech Republic. 2019.

CAPANDOVÁ, Michaela, Hana KOTASOVÁ, Vendula PELKOVÁ, Zbyněk VORÁČ, Šimon FARKAŠ, Irena KOUTNÁ a Aleš HAMPL. In vitro model of alveolar capillary barrier. In The Biomania Student Scientific Meeting & EUSynBioS Symposium 2019. 2019. ISBN 978-80-210-9373-7.

FARKAŠ, Šimon, Pavel ŠIMARA, Daniela ŘEHÁKOVÁ, Tereza SOURALOVÁ a Irena KOUTNÁ. Novel synergistic culturing approach for efficient and robust differentiation of human pluripotent stem cells into endothelial progenitors. In 8. ročník konference Stem Cells and Cell Therapy: From Research to Modern Clinical Applications, Lednice, Czech Republic. 2019.

ŠALINGOVÁ, Barbara, Pavel ŠIMARA, Pavel MATULA, Lenka ZAJÍČKOVÁ, Petr SYNEK, Ondřej JAŠEK, Lenka VEVERKOVÁ, Miroslava SEDLÁČKOVÁ, Zuzana NICHTOVA a Irena KOUTNÁ. The Effect of Uncoated SPIONs on hiPSC-Differentiated Endothelial Cells. International Journal of Molecular Sciences. BASEL: Molecular Diversity Preservation International, 2019, roč. 20, č. 14, s. 1-16. ISSN 1422-0067. Dostupné z: https://dx.doi.org/10.3390/ijms20143536.

EISELLEOVÁ, Lívia, Viktor LUKJANOV, Šimon FARKAŠ, David SVOBODA, Karel ŠTĚPKA a Irena KOUTNÁ. The role of RNA Polymerase II contiguity and long-range interactions in the regulation of gene expression in human pluripotent stem cells. Stem Cells International. Hindawi, 2019, roč. 2019, Article ID 1375807, s. 1-12. ISSN 1687-966X. Dostupné z: https://dx.doi.org/10.1155/2019/1375807.

ŠIMARA, Pavel, Lenka TESAŘOVÁ, Daniela ŘEHÁKOVÁ, Šimon FARKAŠ, Barbara ŠALINGOVÁ, Kateřina KUTÁLKOVÁ, Eva VAVREČKOVÁ, Pavel MATULA, Petr MATULA, Lenka VEVERKOVÁ a Irena KRONTORÁD KOUTNÁ. Reprogramming of Adult Peripheral Blood Cells into Human Induced Pluripotent Stem Cells as a Safe and Accessible Source of Endothelial Cells. Stem Cells and Development. Mary Ann Liebert, Inc. publishers, 2018, roč. 27, č. 1, s. 10-22. ISSN 1547-3287. Dostupné z: https://dx.doi.org/10.1089/scd.2017.0132.

ŠIMARA, Pavel, Lenka TESAŘOVÁ, Daniela ŘEHÁKOVÁ, Šimon FARKAŠ, Barbara ŠALINGOVÁ, Kateřina KUTÁLKOVÁ, Eva VAVREČKOVÁ, Pavel MATULA, Petr MATULA a Irena KRONTORÁD KOUTNÁ. Reprogramming of peripheral blood cells into hiPSCs as a source of endothelial cells. In SY-Stem symposium 2018. 2018.

ŠIMARA, Pavel, Lenka TESAŘOVÁ, Daniela ŘEHÁKOVÁ, Pavel MATULA, Stanislav STEJSKAL, Aleš HAMPL a Irena KRONTORÁD KOUTNÁ. DNA double-strand breaks in human induced pluripotent stem cell reprogramming and long-term in vitro culturing. Stem Cell Research & Therapy. Springer Nature, 2017, roč. 8, č. 73, s. 1-13. ISSN 1757-6512. Dostupné z: https://dx.doi.org/10.1186/s13287-017-0522-5.

TESAŘOVÁ, Lenka, Pavel ŠIMARA, Stanislav STEJSKAL a Irena KRONTORÁD KOUTNÁ. Hematopoietic developmental potential of human pluripotent stem cell lines is accompanied by the morphology of embryoid bodies and the expression of endodermal and hematopoietic markers. Cellular Reprogramming. 2017, roč. 19, č. 4, s. 270-284. ISSN 2152-4971. Dostupné z: https://dx.doi.org/10.1089/cell.2016.0042.

ŠIMARA, Pavel, Irena KRONTORÁD KOUTNÁ, Lenka TESAŘOVÁ a Šimon FARKAŠ. POTENTIAL OF hiPSCs DERIVED FROM DIFFERENT CELL TYPES TO DIFFERENTIATE INTO FUNCTIONAL ENDOTHELIAL CELLS. In ISSCR 2017 Annual Meeting. 2017.

HAMPL, Aleš, Hana KOTASOVÁ, Zuzana GARLÍKOVÁ a Irena KRONTORÁD KOUTNÁ. Self-Renewing Early Lung Epithelial Progenitor Cells Differentiated From Human Embryonic Stem Cells. In ISSCR 2017 Annual Meeting, Boston, USA, 14.-17.6.2017. 2017.

ŘEHÁKOVÁ, Daniela, Kateřina KUTÁLKOVÁ a Irena KRONTORÁD KOUTNÁ. Standardized hiPSCs culture – vitronectin coating for cGMP compliant protocol. Online. Olomouc: Univerzita Palackého, 2017, s. 25-28, 57 s. ISSN 1804-7521.

ŠIMARA, Pavel, Irena KRONTORÁD KOUTNÁ, Lenka TESAŘOVÁ, Daniela ŘEHÁKOVÁ a Pavel MATULA. DNA double strand breaks detection in pluripotent stem cells with regard to cell cycle stages. In ISSCR 2016 Annual Meeting. 2016.

ŠIMARA, Pavel, Lenka TESAŘOVÁ, Daniela ŘEHÁKOVÁ, Pavel MATULA a Irena KRONTORÁD KOUTNÁ. Genomic Stability of the Cells during hiPSC Reprogramming and Endothelial Differentiation. In 12th International Congress of Cell Biology. 2016.

ŠALINGOVÁ, Barbara, Pavel ŠIMARA, Petr SYNEK, Lenka ZAJÍČKOVÁ, Zuzana NICHTOVÁ a Irena KRONTORÁD KOUTNÁ. Paramagnetic nanoparticles in stem cell therapy. In Bioimplantologie. 2016.

TESAŘOVÁ, Lenka, Pavel ŠIMARA, Stanislav STEJSKAL a Irena KRONTORÁD KOUTNÁ. The Aberrant DNA Methylation Profile of Human Induced Pluripotent Stem Cells Is Connected to the Reprogramming Process and Is Normalized During In Vitro Culture. PLOS ONE. Public Library of Science, 2016, roč. 11, č. 6, s. nestránkováno, 16 s. ISSN 1932-6203. Dostupné z: https://dx.doi.org/10.1371/journal.pone.0157974.

KRATOCHVÍLOVÁ, Kateřina, Lukáš MORÁŇ, Stanislava PAĎOUROVÁ, Stanislav STEJSKAL, Lenka TESAŘOVÁ, Pavel ŠIMARA, Aleš HAMPL, Irena KRONTORÁD KOUTNÁ a Petr VAŇHARA. The role of the endoplasmic reticulum stress in stemness, pluripotency and development. European Journal of Cell Biology. Jena: Elsevier GMBH, 2016, roč. 95, 3-5, s. 115-123. ISSN 0171-9335. Dostupné z: https://dx.doi.org/10.1016/j.ejcb.2016.02.002.

SVOBODA, David, Vladimír ULMAN, Peter KOVÁČ, Barbara ŠALINGOVÁ, Lenka TESAŘOVÁ, Irena KRONTORÁD KOUTNÁ a Petr MATULA. Vascular Network Formation in Silico Using the Extended Cellular Potts Model. In 2016 IEEE International Conference on Image Processing. Piscataway, NJ, USA: IEEE Signal Processing Society, 2016, s. 3180-3183. ISBN 978-1-4673-9961-6. Dostupné z: https://dx.doi.org/10.1109/ICIP.2016.7532946.

KRONTORÁD KOUTNÁ, Irena, Barbara ŠALINGOVÁ, Petr SYNEK a Lenka ZAJÍČKOVÁ. Biodistribution of non-coated gamma-Fe2O3 nanoparticles in stem cells. In Creating life in 3D conference,Brno 2- 4.9.2015. 2015.

STEJSKAL, Stanislav, Karel ŠTĚPKA, Lenka TESAŘOVÁ, Karel STEJSKAL, Martina MATĚJKOVÁ, Pavel ŠIMARA, Zbyněk ZDRÁHAL a Irena KRONTORÁD KOUTNÁ. Cell cycle-dependent changes in H3K56ac in human cells. Cell Cycle. Philadelphia: Taylor&Francis Inc, 2015, roč. 14, č. 24, s. 3851-3863. ISSN 1538-4101. Dostupné z: https://dx.doi.org/10.1080/15384101.2015.1106760.

KRONTORÁD KOUTNÁ, Irena, Pavel ŠIMARA, Pavel MATULA, Lenka TESAŘOVÁ a Barbara ŠALINGOVÁ. Derivation of human induced pluripotent stem cells and Advanced Methods of Image Processing. In CEITEC PhD Retreat, 23-24.4.2015, Valtice Czech Republic. 2015.

TESAŘOVÁ, Lenka, Barbara ŠALINGOVÁ, Pavel ŠIMARA a Irena KRONTORÁD KOUTNÁ. Hematopoietic developmental potential is variable in pluripotent stem cell lines. In Conference Frontiers in Material and Life Sciences: Creating Life in 3D, 2-4 September, 2015, Brno. 2015.

TESAŘOVÁ, Lenka, Pavel ŠIMARA, Stanislav STEJSKAL a Irena KRONTORÁD KOUTNÁ. Pluripotent stem cell lines display variable hematopoietic developmental potential. In 2015 EMBL Symposium: Frontiers in Stem Cells & Cancer, Heidelberg, Germany, Mar 29-31, 2015. 2015.

STEJSKAL, Stanislav, Bára SZAROWSKÁ, Lenka TESAŘOVÁ, Pavel ŠIMARA a Irena KRONTORÁD KOUTNÁ. Single-cell analysis of long-range interactions of POU5F1 foci in hESC cells. In EMBL konference: Frontiers in Stec Cells and Cancer. 2015.

ŠIMARA, Pavel, Irena KRONTORÁD KOUTNÁ, Stanislav STEJSKAL a Lenka TESAŘOVÁ. The effect of reprogramming method, source cell type and long-term cell culture on genomic stability of human induced pluripotent stem cells. In ISSCR 2015 Annual Meeting. 2015.

POTĚŠIL, David, Stanislav STEJSKAL, Marek BORSKÝ, Pavel ŠIMARA, Martina HAVELKOVÁ, Filip RÁZGA, Irena KRONTORÁD KOUTNÁ, Dana DVOŘÁKOVÁ, Jiří MAYER, Zdeněk RÁČIL a Zbyněk ZDRÁHAL. Determination of Imatinib in the Blood Cells of Chronic Myelogenous Leukemia Patients by Ion-Trap Mass Spectrometry. Analytical Letters. PHILADELPHIA: TAYLOR & FRANCIS INC, 2014, roč. 47, č. 6, s. 944-957. ISSN 0003-2719. Dostupné z: https://dx.doi.org/10.1080/00032719.2013.860538.

TESAŘOVÁ, Lenka, Pavel ŠIMARA, Stanislav STEJSKAL a Irena KRONTORÁD KOUTNÁ. DNA methylation levels of selected genes in human pluripotent stem cell lines intended for hematopoietic differentiation. In 2014 EMBO Conference Stem Cells in Cancer and Regenerative medicine, Heidelberg, Germany, Oct 9-12, 2014. 2014.

TESAŘOVÁ, Lenka, Stanislav STEJSKAL a Irena KRONTORÁD KOUTNÁ. Driven hematopoietic differentiation of embryonic stem cells: Epigenetic perspectives. CURRENT PHARMACEUTICAL DESIGN. SHARJAH: BENTHAM SCIENCE PUBL LTD, 2014, roč. 20, č. 11, s. 1674-1686. ISSN 1381-6128. Dostupné z: https://dx.doi.org/10.2174/13816128113199990524.

ŠALINGOVÁ, Barbara, Martina MADARÁSOVÁ, Stanislav STEJSKAL, Lenka TESAŘOVÁ, Pavel ŠIMARA a Irena KRONTORÁD KOUTNÁ. From Endothelial Progenitor Cells to Tissue Engineering: How Far Have We Come? Journal of Stem Cell Research & Therapy. 5716 Corsa Ave, Los Angeles, USA: OMICS group, 2014, roč. 4, č. 3, s. 185-195. ISSN 2157-7633. Dostupné z: https://dx.doi.org/10.4172/2157-7633.1000185.

ŠIMARA, Pavel, Lenka TESAŘOVÁ, Stanislava PAĎOUROVÁ a Irena KRONTORÁD KOUTNÁ. Generation of Human Induced Pluripotent Stem Cells Using Genome Integrating or Non-integrating Methods. In Advances in Molecular and Cancer Biology. 2014.

ŠIMARA, Pavel, Lenka TESAŘOVÁ, Stanislava PAĎOUROVÁ a Irena KRONTORÁD KOUTNÁ. Generation of Human Induced Pluripotent Stem Cells Using Genome Integrating or Non-integrating Methods. Folia Biologica. Praha: Univerzita Karlova, 2014, roč. 60, S1, s. 85-89. ISSN 0015-5500.

TESAŘOVÁ, Lenka, Pavel ŠIMARA, Stanislav STEJSKAL a Irena KRONTORÁD KOUTNÁ. Haematopoietic developmental potential of human pluripotent stem cell lines. Folia biologica. Praha: Univerzita Karlova, 2014, roč. 60, č. 1, s. 90-94. ISSN 0015-5500.

TESAŘOVÁ, Lenka, Pavel ŠIMARA, Barbara ŠALINGOVÁ a Irena KRONTORÁD KOUTNÁ. Hematopoietic differentiation of human pluripotent stem cells. In Advances in Molecular and Cancer Biology. 2014.

STEJSKAL, Stanislav, Karel STEJSKAL, Karel ŠTĚPKA, Martina MATĚJKOVÁ, Zbyněk ZDRÁHAL a Irena KRONTORÁD KOUTNÁ. H3K56ac distribution in cancer and embryonic cell lines during cell cycle. In EMBO Stem Cells in Cancer and Regenerative Medicine. 2014.

RUČKA, Zdeněk, Irena KRONTORÁD KOUTNÁ, Lenka TESAŘOVÁ, Michaela POTĚŠILOVÁ, Stanislav STEJSKAL, Pavel ŠIMARA, Petr VAŇHARA, Jan DOLEŽEL, Václav ZVONÍČEK, Oldřich COUFAL a Ivan ČAPOV. Intravenous insulin therapy during lung resection does not affect lung function or surfactant proteins. BMC Pulmonary Medicine. London, United Kingdom: BIOMED CENTRAL LTD, 2014, roč. 14, č. 1, s. 155-163. ISSN 1471-2466. Dostupné z: https://dx.doi.org/10.1186/1471-2466-14-155.

STEJSKAL, Stanislav, Lenka TESAŘOVÁ a Irena KRONTORÁD KOUTNÁ. Mysterious Role of H3K56ac in Embryonic Stem Cells. Folia biologica. Univerzita Karlova, 2014, roč. 60, č. 2014, s. 71-75. ISSN 0015-5500.

STEJSKAL, Stanislav, Karel ŠTĚPKA, Karel STEJSKAL, Martina MATĚJKOVÁ, Pavel MATULA a Irena KRONTORÁD KOUTNÁ. Regulation of H3K56ac during cell cycle in mammalian cells. In Advances in Molecular and Cancer Biology. 2014.

ŠIMARA, Pavel, Stanislav STEJSKAL, Irena KRONTORÁD KOUTNÁ, David POTĚŠIL, Lenka TESAŘOVÁ, Michaela POTĚŠILOVÁ, Zbyněk ZDRÁHAL a Jiří MAYER. Apoptosis in chronic myeloid leukemia cells transiently treated with imatinib or dasatinib is caused by residual BCR-ABL kinase inhibition. American Journal of Hematology. NJ 07030-577 United States: John Wiley & Sons, 2013, roč. 88, č. 5, s. 385-393. ISSN 0361-8609. Dostupné z: https://dx.doi.org/10.1002/ajh.23419.

STEJSKAL, Stanislav, Martina MATĚJKOVÁ, Karel ŠTĚPKA, Michaela POTĚŠILOVÁ, Lenka TESAŘOVÁ, Pavel ŠIMARA a Irena KRONTORÁD KOUTNÁ. Cell cycle dependent changes of H3K56ac levels in cancer and hES cells. In 2013 IMB Conference: Chromatin Dynamics and Stem Cells. 2013.

RUČKA, Zdeněk, Petr VAŇHARA, Irena KRONTORÁD KOUTNÁ, Lenka TESAŘOVÁ, Michaela POTĚŠILOVÁ, Stanislav STEJSKAL, Pavel ŠIMARA, Jan DOLEŽEL, Václav ZVONÍČEK, Oldřich COUFAL a Ivan ČAPOV. Differential effects of insulin and dexamethasone on pulmonary surfactant-associated genes and proteins in A549 and H441 cells and lung tissue. INTERNATIONAL JOURNAL OF MOLECULAR MEDICINE. UNITED STATES: SPANDIDOS PUBL LTD, 2013, roč. 32, č. 1, s. 211-218. ISSN 1107-3756. Dostupné z: https://dx.doi.org/10.3892/ijmm.2013.1363.

TESAŘOVÁ, Lenka, Irena KRONTORÁD KOUTNÁ, Alena DRDÚLOVÁ, Stanislav STEJSKAL, Michaela POTĚŠILOVÁ a Pavel ŠIMARA. In vitro developmental potential of human embryonic stem cell lines evaluated by gene expression analysis of a new set of differentiation markers. In 2013 ISSCR’s Stem Cell in Translation, Florence, Italy, Sept 15-18. 2013.

ŠIMARA, Pavel, Stanislav STEJSKAL, Irena KRONTORÁD KOUTNÁ, David POTĚŠIL, Lenka TESAŘOVÁ, Michaela POTĚŠILOVÁ, Zbyněk ZDRÁHAL a Jiří MAYER. Apoptosis in Chronic Myeloid Leukemia Cells Transiently Treated with Imatinib or Dasatinib Is Caused by Residual BCR-ABL Kinase Inhibition. In 54th ASH Annual Meeting and Exposition. 2012. ISSN 1528-0020.

ŠIMARA, Pavel, Martina PETERKOVÁ, Stanislav STEJSKAL, Michaela POTĚŠILOVÁ, Irena KRONTORÁD KOUTNÁ, Zdeněk RÁČIL, Filip RÁZGA, Tomáš JURČEK, Dana DVOŘÁKOVÁ a Jiří MAYER. BCR-ABL activity measured by 50% inhibitory concentration for imatinib, p-CrkL/CrkL ratio or p-CrkL ratio in CD34+ cells of patients with chronic myeloid leukemia does not predict treatment response. Leukemia & lymphoma. England: Informa Healthcare, 2012, roč. 53, č. 8, s. 1627-1629. ISSN 1042-8194. Dostupné z: https://dx.doi.org/10.3109/10428194.2012.656104.

KRONTORÁD KOUTNÁ, Irena, Pavel ŠIMARA, Petra ONDRÁČKOVÁ a Lenka TESAŘOVÁ. Flow Cytometry Analysis of Intracelular Protein. Online. In Ingrid Schmid, University of California, Los Angeles. Flow Cytometry , Recent Perspectives. Rijeka, Croatia: InTech, 2012, s. 421-438. Open science/open minds. ISBN 978-953-51-0626-5. Dostupné z: https://dx.doi.org/10.5772/38400.

TESAŘOVÁ, Lenka, Irena KRONTORÁD KOUTNÁ, Magdaléna DVOŘÁKOVÁ a Martin KLABUSAY. Relative expression of gammadelta T-cell receptor gene families detected by RT–PCR and capillary electrophoresis. International Journal of immunogenetics. Blackwell Publishing Ltd, 2012, roč. 39, č. 5, s. 381-388. ISSN 1744-3121. Dostupné z: https://dx.doi.org/10.1111/j.1744-313X.2012.01114.x.

TESAŘOVÁ, Lenka, Irena KRONTORÁD KOUTNÁ, Zdeněk KOŘÍSTEK a Martin KLABUSAY. Multiple myeloma patients at peripheral blood stem cell harvest: restricted usage of TCR beta variable families. Clinical Immunology. Elsevier, 2011, roč. 138, č. 1, s. 67-76. ISSN 1521-6616. Dostupné z: https://dx.doi.org/10.1016/j.clim.2010.09.007.

KRONTORÁD KOUTNÁ, Irena, Martina PETERKOVÁ, Pavel ŠIMARA, Stanislav STEJSKAL, Lenka TESAŘOVÁ a Michal KOZUBEK. Proliferation and differentiation potential of CD133+ and CD34+ populations from the bone marrow and mobilized peripheral blood. Annals of hematology. Germany: Springer, 2011, roč. 90, (2), s. 127-137. ISSN 0939-5555.

STEJSKAL, Stanislav, Pavel MATULA, Ondřej DANĚK, Martin MAŠKA, Irena KRONTORÁD KOUTNÁ a Michal KOZUBEK. A novel approach to evaluation of the spatial relationship of fluorescent signals in ImunnoFISH analysis of different kind. In Advances in Molecular and Cancer Biology, 2010. Brno: muni PRESS, 2010, s. 39-41. ISBN 978-80-210-5312-0.

TESAŘOVÁ, Lenka, Martina PETERKOVÁ, Stanislav STEJSKAL, Michaela POTĚŠILOVÁ a Irena KRONTORÁD KOUTNÁ. Application of reverse transcription PCR and capillary electrophoresis in the analysis of T-cell receptor beta variable repertoire. In Advances in Molecular and Cancer Biology, 2010. Brno, Česká republika: muni PRESS, 2010, s. 46-51. ISBN 978-80-210-5312-0.

KRONTORÁD KOUTNÁ, Irena, Michaela POTĚŠILOVÁ, Martina PETERKOVÁ, Lenka TESAŘOVÁ a Zdeněk RUČKA. Comparison of gene expression profiling between amplified clinical samples using cDNA microarrays. In Advances in Molecular and Cancer Biology, 2010. Brno: muni PRESS, 2010, s. 26-30. ISBN 978-80-210-5312-0.

ŠIMARA, Pavel, Stanislav STEJSKAL, Martina PETERKOVÁ, Irena KRONTORÁD KOUTNÁ, Zdeněk RÁČIL a Jiří MAYER. Dasatinib Promotes BIM Dependent Apoptosis Via MEK/ERK without Need for Permanent BCR-ABL Inhibition. In ASH 2010. 2010. ISSN 1528-0020.

ŠIMARA, Pavel, Stanislav STEJSKAL, Martina PETERKOVÁ, Jiří MAYER, Zdeněk RÁČIL, Irena KRONTORÁD KOUTNÁ a Michal KOZUBEK. Dasatinib suppresses MEK/ERK pathway activity without sustained BCR-ABL inhibition and promotes BIM dependent apoptosis in chronic myeloid leukaemia cells. In XXIV. Olomoucké hematologické dny s mezinárodní účastí. 2010. ISSN 1213-5763.

ŠIMARA, Pavel, Stanislav STEJSKAL, Martina PETERKOVÁ, Irena KRONTORÁD KOUTNÁ, Zdeněk RÁČIL a Jiří MAYER. Determination of pCrkL level in chronic myeloid leukaemia cells using flow cytometry. In Advances in Molecular and Cancer Biology, 2010. Brno, Česká Republika: muni PRESS, 2010, s. 43-45. ISBN 978-80-210-5312-0.

RUČKA, Zdeněk, Lenka TESAŘOVÁ, Michaela POTĚŠILOVÁ, Stanislav STEJSKAL, Irena KRONTORÁD KOUTNÁ, Petr VAŇHARA a Jan DOLEŽEL. Dexamethasone and Insulin Affecting SFTPA1 and SFTPA2 mRNA Levels. In Advances in Molecular and Cancer Biology, 2010. Brno, Česká republika: muni PRESS, 2010, s. 36-38. ISBN 978-80-210-5312-0.

STEJSKAL, Stanislav, Irena KRONTORÁD KOUTNÁ a Zdeněk RUČKA. Isolation of granulocytes: Which transcriptome do we analyze neutrophils or eosinophils? FOLIA BIOLOGICA. 2010, roč. 56, č. 6, s. 252 - 255. ISSN 0015-5500.

POTĚŠIL, David, Filip RÁZGA, Stanislav STEJSKAL, Lenka TESAŘOVÁ, Pavel ŠIMARA, Martina PETERKOVÁ, Dana DVOŘÁKOVÁ, Ludmila MALÁŠKOVÁ, Irena KRONTORÁD KOUTNÁ, Zdeněk RÁČIL, Jiří MAYER a Zbyněk ZDRÁHAL. Stanovení intracelulární koncentrace imatinibu u CML pacientů. 2010. ISSN 1213-5763.

DOLEŽEL, Jan, Adam PEŠTÁL, Václav JEDLIČKA, Martin VESELÝ, Petr DIVIŠ, Ivan ČAPOV, D. ZVONICKOVA, Z. RUCKA a Irena KRONTORÁD KOUTNÁ. The effect of insulin intake during lung resections - first results. In British Journal of Surgery. 2010. ISSN 0007-1323.

STEJSKAL, Stanislav, Irena KRONTORÁD KOUTNÁ, Pavel MATULA, Zdeněk RUČKA, Ondřej DANĚK, Martin MAŠKA a Michal KOZUBEK. The role of chromatin condensation during granulopoiesis in the regulation of gene cluster expression. Epigenetics. USA: Landes Bioscience, 2010, roč. 5, č. 8, s. 759-767. ISSN 1559-2294. Dostupné z: https://dx.doi.org/10.4161/epi.5.8.13183.

POTĚŠILOVÁ, Michaela, Miroslav VAŘECHA, Lenka TESAŘOVÁ a Irena KRONTORÁD KOUTNÁ. Time lapse living cells microscopy for studying CML: Preparation of Abl1- and Bcr/Abl - fluorescent protein vectors using Gateway technology. In Advances in Molecular and Cancer Biology, 2010. Brno: muni PRESS, 2010, s. 31-35. ISBN 978-80-210-5312-0.

DOLEŽEL, Jan, Adam PEŠTÁL, Ivan ČAPOV, Zdeněk RUČKA a Irena KRONTORÁD KOUTNÁ. Vliv intravenózně podávaného inzulínu na hodnoty krevních plynů při resekci plic- první výsledky. 1. vyd. Semily: V.Mezinárodní kongres miniinvazivní a robotické chirurgie, VII.český chirurgický sjezd, XXXVIII. společný sjezd českých a slovenských chirurgů, 2010, s. 9. ISSN 1802-6400.

ŠIMARA, Pavel, Irena KOUTNÁ, Stanislav STEJSKAL, Petr KRONTORÁD, Zdeněk RUČKA, Martina PETERKOVÁ a Michal KOZUBEK. Combination of mRNA and protein microarray analysis in complex cell profiling. Neoplasma. Bratislava, Slovensko: AEPress, s.r.o., 2009, roč. 2/2009, č. 56, s. 141-149. ISSN 0028-2685.

RUČKA, Zdeněk, Petr VAŇHARA, Lenka TESAŘOVÁ, Michaela POTĚŠILOVÁ, Stanislav STEJSKAL, Jan DOLEŽEL a Irena KOUTNÁ. Insulin Decreases Transcription of Three Proteins Associated with Lung Surfactant. 2009. vyd. Posters@Technologynetworks.net, 2009. The Online Journal of Scientific Posters.

PETERKOVÁ, Martina, Irena KOUTNÁ, Lenka TESAŘOVÁ, Michaela POTĚŠILOVÁ, Michal KOZUBEK, Viera HRABČÁKOVÁ, Martin KLABUSAY, Michael DOUBEK a Jiří MAYER. Microarray analysis using limited amount of cells. Folia Biologica (Praha). 2009, roč. 2009, č. 55, s. 53-60. ISSN 0015-5500.

TESAŘOVÁ, Lenka, Irena KOUTNÁ, Martina PETERKOVÁ, Michaela POTĚŠILOVÁ, Magdaléna DVOŘÁKOVÁ a Stanislav STEJSKAL. Representation of T-cell receptor V beta families detected by reverse transcription PCR and capillary electrophoresis. In Experimental Hematology, Volume 37, Number 9. University of Nevada, USA: Elsevier, 2009, s. 72. ISSN 0301-472X.

PETERKOVÁ, Martina, Irena KOUTNÁ, Pavel ŠIMARA, Stanislav STEJSKAL a Lenka TESAŘOVÁ. The in vitro proliferation potential and proportion of CD133+ versus CD34+ hematopoietic stem cells. In Experimental Hematology, Volume 37, Number 9. University of Nevada, USA: Elsevier, 2009, s. 35-36. ISSN 0301-472X.

POTĚŠILOVÁ, Michaela, Miroslav VAŘECHA, Stanislav STEJSKAL, Irena KOUTNÁ a Michal KOZUBEK. Time-lapse living cells microscopy of cell line K562 for study of CML-associated proteins dynamics - immobilization of suspension cultured cells. In Analytical cytometry V. 2009. ISBN 978-80-254-2561-9.

PETERKOVÁ, Martina, Irena KOUTNÁ, Lenka TESAŘOVÁ, Michaela POTĚŠILOVÁ, Zdeněk RUČKA, Viera HRABČÁKOVÁ a Martin KLABUSAY. cDNA Microarray: Gene Expression Profiling of Small Cell Populations. 2008.

KOUTNÁ, Irena. Gene Expression differences in bone marrow hematoietic stem cell subpopulation. In KOUTNÁ, Irena, Martin KLABUSAY, Martina PETERKOVÁ, Viera HRABČÁKOVÁ, Michaela POTĚŠILOVÁ, Petr KRONTORÁD a Michal KOZUBEK. 3rd ESF functional genomics conference. 2008.

TESAŘOVÁ, Lenka, Irena KOUTNÁ, Martin KLABUSAY, Viera HRABČÁKOVÁ a Petr KRONTORÁD. Gene Expression Profiling During Ex Vivo Granulopoiesis: a Possible Tool for Quality Assessment of CD34+ Cells from Lymphoma Patients. In 3rd ESF Functional Genomics Conference. 2008.

KLABUSAY, Martin, Viera HRABČÁKOVÁ, Irena KOUTNÁ, Petr KRONTORÁD, Jiří MAYER a Drahomír HORKÝ. Comparison of two methods of hematopoietic stem cell isolation and evaluation of the ex vivo cultured and differentiated cells with cDNA microarrays. In Haematologica – The Hematology Journal. 1. vyd. Italy: European Hematology Association, 2007, s. 468-468, 548 s. ISSN 0390-6078.

KOUTNÁ, Irena, Lenka TESAŘOVÁ, Martin KLABUSAY, Petr KROTORÁD, Michal STREHOVSKÝ, Martina PETERKOVÁ a Viera HRABČÁKOVÁ. Expression Profiling of CD34+ of Peripheral Blood of Patients with Lymphoma During ex vivo Granulocytic Differentiation. 2007.

KRONTORÁD, Petr, Irena KOUTNÁ a Michal STREHOVSKÝ. Interactive Transcription Maps Over Microarray Data. 2007.

ŠIMARA, Pavel, Irena KOUTNÁ, Stanislav STEJSKAL, Martina PETERKOVÁ, Petr KRONTORÁD a Zdeněk RUČKA. Large-scale Microarray Analysis of Protein and mRNA Level Changes in HL-60 Cells. 2007.

KOUTNÁ, Irena, Petr KRONTORÁD, Zbyněk SVOBODA, Eva BÁRTOVÁ, Michal KOZUBEK a Stanislav KOZUBEK. New insights into gene positional clustering and its properties supported by large-scale analysis of various differentiation pathways. Genomics. United States: Elsevier Science Inc, 2007, roč. 89, č. 1, s. 81-88. ISSN 0888-7543.

KLABUSAY, Martin, Irena KOUTNÁ, Viera HRABČÁKOVÁ, Petr KRONTORÁD a Jiří MAYER. Srovnání dvou metod imunomagnetické separace hematopoetických kmenových buněk (CD34+ a Lin) z transplantátů PBSC pomocí cDNA microarrays během ex vivo kultivace. In XXI. Olomoucké hematologické dny s mezinárodní účastí, Olomouc, 16.-19.6.2007. 2007. ISBN 978-80-7346-078-5.

KLABUSAY, Martin, Viera HRABČÁKOVÁ, Irena KOUTNÁ, Petr KRONTORÁD, Zbyněk SVOBODA, Michal KOZUBEK a Jiří MAYER. Srovnání metod CD34+ a Lin– selekce buněk ze štěpu periferních kmenových buněk pacientů s lymfomy a vyhodnocení jejich ex vivo diferenciace pomocí cDNA microarrays. In XXXI. Brněnské onkologické dny s XXI. konferencí pro sestry a laboranty. 1. vyd. Brno: Masarykův onkologický ústav, 2007, s. 182-183, 410 s. ISBN 978-9780-86793-09-2.

STREHOVSKÝ, Michal, Irena KRONTORÁD KOUTNÁ a Petr KRONTORÁD. TransMap Viewer. 2007.

JANSOVÁ, Eva, Irena KOUTNÁ, Petr KRONTORÁD, Zbyněk SVOBODA, Silvie KŘIVÁNKOVÁ, Jan ŽALOUDÍK, Michal KOZUBEK a Stanislav KOZUBEK. Comparative transcriptome maps: a new approach to the diagnosis of colorectal carcinoma patients using cDNA microarrays. Clinical Genetics. Denmark: Blackwell Munksgaard, 2006, roč. 69, č. 3, s. 218-227. ISSN 0009-9163.

KOUTNÁ, Irena, Martin KLABUSAY, Viera HRABČÁKOVÁ, Petr KRONTORÁD, Zbyněk SVOBODA, Michal KOZUBEK a Jiří MAYER. Evaluation of CD34+ - and Lin- -selected cells from peripheral blood stem cell grafts of patients with lymphoma during differentiation in culture ex vivo using a cDNA microarray technique. Experimental hematology. Netherlands: Elsevier Science Inc, 2006, roč. 34, č. 7, s. 832-840, 10 s. ISSN 0301-472X.

RUČKA, Zdeněk, Stanislav STEJSKAL a Irena KOUTNÁ. Looking for the Role of Metallothioneins in Colorectal Carcinoma Cell Lines. Lausanne, Švýcarsko: ISREC, 2006, s. 87.

KOUTNÁ, Irena, Petr KRONTORÁD, Lenka TESAŘOVÁ, Martin KLABUSAY, Viera HRABČÁKOVÁ a Michal KOZUBEK. Transcription density map as a new tool for evaluation of various expression profiles: Ex vivo differentiation of CD34+ cells. In ISREC Conference on Cancer Research. 2006.

KOUTNÁ, Irena, Petr KRONTORÁD, Zbyněk SVOBODA a Michal KOZUBEK. Vybrané aplikace technologie cDNA microarrays v onkologickém výzkumu. Klinická onkologie. Czech Republic: ApS BRNO, 2006, roč. 19, č. 2, s. 338 - 341. ISSN 0862-495X.

KRONTORÁD, Petr, Zbyněk SVOBODA, Irena KOUTNÁ, Eva JANSOVÁ a Michal KOZUBEK. Analýza obrazů získaných snímáním microarrays. In Analytická cytometrie III. 2005. ISBN 80-239-5155-6.

KOUTNÁ, Irena, Eva JANSOVÁ, Petr KRONTORÁD, Zbyněk SVOBODA, Michal KOZUBEK a Stanislav KOZUBEK. cDNA Microarray Technology as a Tool for Better Understanding of Progress of Malignant Diseases. In Prague Post Genome Technology Workshop. Prague, Czech Republic: Czech Pattern Recognition Society, 2005, s. 69-72. ISBN 80-01-03239-6.

JANSOVÁ, Eva, Petr KRONTORÁD, Irena KOUTNÁ, Stanislav STEJSKAL, Petr MATULA, David SVOBODA, Michal KOZUBEK a Stanislav KOZUBEK. Combination of cDNA microarray technology and fluorescence leads to better understanding of relationships between gene expression and epigenetic regulation. In MGED8 Abstract book. 2005.

KOUTNÁ, Irena, Petr KRONTORÁD, Eva JANSOVÁ, Zbyněk SVOBODA, Michal KOZUBEK a Stanislav KOZUBEK. Důkaz klastrování genů na chromosomových doménách studiem diferenciací buněčných nádorových linií. In Analytická cytometrie III. 2005. ISBN 80-239-5155-6.

KRONTORÁD, Petr, Zbyněk SVOBODA, Irena KOUTNÁ, Eva JANSOVÁ a Michal KOZUBEK. New practical tools for microarray data analysis. In MGED8 Abstract book. 2005.

SVOBODA, Zbyněk, Petr KRONTORÁD, Eva JANSOVÁ, Irena KOUTNÁ a Michal KOZUBEK. Normalizační metody ve zpracování dat z DNA Microarrays. In Analytická cytometrie III. 2005. ISBN 80-239-5155-6.

JANSOVÁ, Eva, Irena KOUTNÁ, Petr KRONTORÁD, Zbyněk SVOBODA, Michal KOZUBEK a Stanislav KOZUBEK. Sledování změn genové exprese u pacientů s kolorektálním karcinomem pomocí cDNA microarrays technologie a jejich diagnostika pomocí transkripčních map. In Analytická cytometrie III. 2005. ISBN 80-239-5155-6.

KOUTNÁ, Irena, Jiří MAYER, Martin KLABUSAY, Petr KRONTORÁD, Eva JANSOVÁ, Michal KOZUBEK a Stanislav KOZUBEK. Transcriptional profiling of human CD34+ cells during in vitro differentiation. In MGED8 Abstract book. 2005.

KOUTNÁ, Irena, Eva JANSOVÁ, Petr KRONTORÁD, Zbyněk SVOBODA, Tomáš PAVLÍK, Eva BÁRTOVÁ, Michal KOZUBEK a Stanislav KOZUBEK. Clustering of genes with similar regulation patterns during monocyte and granulocyte differentiation of HL-60 cells. In Biophysics of the Genome. First Edition 2004. Brno: Masaryk University, 2004, s. 38-43. ISBN 80-210-3560-9.

JANSOVÁ, Eva, Petr KRONTORÁD, Zbyněk SVOBODA, Irena KOUTNÁ, Tomáš PAVLÍK, Michal KOZUBEK, Marie JAROŠOVÁ, Jan ŽALOUDÍK a Stanislav KOZUBEK. Gene expression in colorectal carcinoma determined by cDNA microarrays using a combination of several evaluation approaches. In Biophysics of the Genome. First Edition 2004. Brno: Masaryk University, 2004, s. 29-37. ISBN 80-210-3560-9.

JANSOVÁ, Eva, Petr KRONTORÁD, Zbyněk SVOBODA, Tomáš PAVLÍK, Irena KOUTNÁ, Michal KOZUBEK, Jan ŽALOUDÍK a Stanislav KOZUBEK. Nové možnosti v diagnostice kolorektálního karcinomu s využitím technologie cDNA mikročipů. Klinická onkologie. Brno: ApS Brno, spol.s.r.o., 2004, roč. 6/17, č. 6, s. 203-207. ISSN 0862-495X.

BÁRTOVÁ, Eva, Stanislav KOZUBEK, Hana GAJOVÁ, Pavla JIRSOVÁ, Jitka ŽLŮVOVÁ, Renata TASLEROVÁ, Irena KOUTNÁ a Michal KOZUBEK. Cytogenetics and cytology of retinoblastomas. J Cancer Res. Clin.Oncol. Berlin: Springer-Verlag, 2003, roč. 129, č. 2, s. 89-99. ISSN 0171-5216.

BÁRTOVÁ, Eva, Stanislav KOZUBEK, Pavla JIRSOVÁ, Michal KOZUBEK, Hana GAJOVÁ, Emilie LUKÁŠOVÁ, Magdalena SKALNÍKOVÁ, Alena GAŇOVÁ, Irena KOUTNÁ a Michael HAUSMANN. Nuclear structure and gene activity in human differentiated cells. Journal of Structural Biology. San Diego,USA: Academic Press, 2002, roč. 139, č. 2, s. 76-89. ISSN 1047-8477.

BÁRTOVÁ, Eva, Stanislav KOZUBEK, Pavla JIRSOVÁ, Michal KOZUBEK, Emilie LUKÁŠOVÁ, Magdalena SKALNÍKOVÁ, Alena GAŇOVÁ, Irena KOUTNÁ a Renata PASEKOVÁ. Nuclear topography and gene activity. In Biophysics of the genome and its interactions. Brno: Masaryk University, 2002, s. 13-17. ISBN 80-210-2853-X.

AMRICHOVÁ, Jana, Michal KOZUBEK, Stanislav KOZUBEK, Emilie LUKÁŠOVÁ, Martin FALK, Renata TASLEROVÁ, Pavel MATULA, Petr MATULA, P JIRSOVÁ, Magdalena SKALNÍKOVÁ, Eva BÁRTOVÁ a Irena KRONTORÁD KOUTNÁ. Repeated fluorescence in situ hybridization and its applications in human genome studies. In 2nd Elmau Conference on Nuclear Organisation, Gene Regulation and Nuclear Structure, 6. - 9. října, 2002, Schloss Elmau, Německo. (in English)In: Conference Program, p. 13. 2002.

KOZUBEK, Stanislav, Emilie LUKÁŠOVÁ, Eva BÁRTOVÁ, Irena KOUTNÁ, Pavla JIRSOVÁ, Michal KOZUBEK, Alena GAŇOVÁ, Renata PASEKOVÁ, Jana AMRICHOVÁ, Martin FALK a Pavel HLOŽEK. Structure of the human genome: Experimental results and models. In Biophysics of the genome and its interactions. Brno: Masaryk University, 2002, s. 54-67. ISBN 80-210-2853-X.

KOZUBEK, Stanislav, Emilie LUKÁŠOVÁ, Pavla JIRSOVÁ, Irena KOUTNÁ, Michal KOZUBEK, Alena GAŇOVÁ, Eva BÁRTOVÁ, Martin FALK a Renata TASLEROVÁ. 3D Structure of the human genome: Order in randomness. Chromosoma. Berlin: Springer-Verlag, 2002, roč. 111, č. 5, s. 321-331. ISSN 0009-5915.

KOZUBEK, Michal, Stanislav KOZUBEK, Emilie LUKÁŠOVÁ, Eva BÁRTOVÁ, Magdalena SKALNÍKOVÁ, Pavel MATULA, Petr MATULA, Pavla JIRSOVÁ, Alena GAŇOVÁ a Irena KOUTNÁ. Combined confocal and wide-field high-resolution cytometry of FISH-stained cells. Cytometry. New York: International Society for Analytical Cyt, 2001, roč. 45, č. 1, s. 1-12. ISSN 0196-4763.

GAŇOVÁ, Alena, Emilie LUKÁŠOVÁ, Stanislav KOZUBEK, Michal KOZUBEK, Raisa GOVORUN, Irena KOUTNÁ, Eva BÁRTOVÁ, Magdalena SKALNÍKOVÁ, Pavla JIRSOVÁ, Renata PASEKOVÁ a Evgenij KRASAVIN. Exchange aberrations among 11 chromosomes of human lymphocytes induced by gamma-rays. International Journal of Radiation Biology. 2001, roč. 77, č. 4, s. 419-429. ISSN 0955-3002.

GAŇOVÁ, Alena, Emilie LUKÁŠOVÁ, Stanislav KOZUBEK, Michal KOZUBEK, Eva BÁRTOVÁ, P JIRSOVÁ, Magdalena SKALNÍKOVÁ, Irena KRONTORÁD KOUTNÁ, R PASEKOVÁ a Martin FALK. Exchange aberrations among 11 chromosomes of human lymphocytes induced by gamma-rays. In Mezinárodní radiobiologické symposium, 15. - 16. června, 2001, Hradec Králové, Česká republika. In: Acta Radiobiologica 1, 2001, p. 21. 2001.

BÁRTOVÁ, Eva, Stanislav KOZUBEK, Pavla JIRSOVÁ, Michal KOZUBEK, Emilie LUKÁŠOVÁ, Magdalena SKALNÍKOVÁ, Alena GAŇOVÁ, Irena KOUTNÁ a Renata PASEKOVÁ. Higher-order chromatin structure of human granulocytes. Chromosoma. Berlin: Springer-Verlag, 2001, roč. 110, č. 5, s. 360-370. ISSN 0009-5915.

KOZUBEK, Stanislav, Emilie LUKÁŠOVÁ, Eva BÁRTOVÁ, Michal KOZUBEK, Magdalena SKALNÍKOVÁ, Irena KRONTORÁD KOUTNÁ, P JIRSOVÁ, Alena GAŇOVÁ, R PASEKOVÁ, J AMRICHOVÁ, Pavel MATULA, Petr MATULA, P MEJZLÍK, Martin FALK a S PALŠA. Induction of chronic myeloid leukemia by ionizing radiation: experimental basis for risk estimation. In VIIth International Workshop Radiation Damage to DNA, 2. - 7. září, 2001, Orléans Nouan-le-Fuzelier, Francie. In: Abstracts, nestr. 2001.

JIRSOVÁ, Pavla, Stanislav KOZUBEK, Eva BÁRTOVÁ, Michal KOZUBEK, Emilie LUKÁŠOVÁ, Alena GAŇOVÁ, Irena KOUTNÁ a Magdalena SKALNÍKOVÁ. Spatial distribution of selected genetic loci in nuclei of human leukemia cells after irradiation. Radiation Research. 2001, roč. 155, č. 2, s. 311-319. ISSN 0033-7587.

KOZUBEK, Stanislav, Emilie LUKÁŠOVÁ, Eva BÁRTOVÁ, Irena KRONTORÁD KOUTNÁ, P JIRSOVÁ, Michal KOZUBEK, A GAŇOVÁ, R PASEKOVÁ, J AMRICHOVÁ, Martin FALK a P HLOŽEK. Structure of the human genome: Experimental results and models. In Conference on Biophysics of the Genome and Its Interactions, 15. – 17. října, 2001, Hlohovec, Česká republika. (in English). In: Book of Abstracts. 2001.

KOZUBEK, Michal, Stanislav KOZUBEK, Emilie LUKÁŠOVÁ, Eva BÁRTOVÁ, Magdalena SKALNÍKOVÁ, Pavel MATULA, Petr MATULA, Pavla JIRSOVÁ, Alena GAŇOVÁ a Irena KOUTNÁ. Advances in high-resolution cytometry of FISH dots in interphase cell nuclei. In Cytokinematics 2000. 2000.

KOZUBEK, Michal, Stanislav KOZUBEK, Emilie LUKÁŠOVÁ, Eva BÁRTOVÁ, Magdalena SKALNÍKOVÁ, Pavel MATULA, Petr MATULA, Pavla JIRSOVÁ, Alena GAŇOVÁ a Irena KOUTNÁ. Advances in high-resolution cytometry of FISH dots in interphase cell nuclei. In The XX Congress of the International Society for Analytical Cytology. 2000.

BÁRTOVÁ, Eva, Stanislav KOZUBEK, Michal KOZUBEK, Pavla JIRSOVÁ, Emilie LUKÁŠOVÁ, Magdalena SKALNÍKOVÁ, Alena CAFOURKOVÁ a Irena KOUTNÁ. Nuclear topography of the c-myc gene in human leukemic cells. Gene. Amsterdam: Elsevier, 2000, roč. 244, č. 1, s. 1-11. ISSN 0378-1119.

SKALNÍKOVÁ, Magdalena, Stanislav KOZUBEK, Emilie LUKÁŠOVÁ, Eva BÁRTOVÁ, Pavla JIRSOVÁ, Alena CAFOURKOVÁ, Irena KOUTNÁ a Michal KOZUBEK. Spatial arrangement of genes, centromeres and chromosomes in human blood cell nuclei and its changes during the cell cycle, differentiation and after irradiation. Chromosome Research. Dordrecht: Kluwer Academic, 2000, roč. 8, č. 6, s. 487-499. ISSN 0967-3849.

KOUTNÁ, Irena, Stanislav KOZUBEK, Jan ŽALOUDÍK, Michal KOZUBEK, Emilie LUKÁŠOVÁ, Pavel MATULA, Eva BÁRTOVÁ, Magdalena SKALNÍKOVÁ, Alena CAFOURKOVÁ a Pavla JIRSOVÁ. Topography of genetic loci in tissue samples: towards new diagnostic tool using interphase FISH and high-resolution image analysis techniques. Analytical Cellular Pathology. Amsterdam: IOS Press, 2000, roč. 20, č. 4, s. 173-185. ISSN 0921-8912.