Masaryk University

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    2024

    1. Cell Tracking based on Integer Linear Programming and Probability Scores
      LUX, Filip and Petr MATULA. Cell Tracking based on Integer Linear Programming and Probability Scores. In Athens, Greece, IEEE 21th International Symposium on Biomedical Imaging. Athens: IEEE 21th International Symposium on Biomedical Imaging, 2024, 5 pp. ISSN 1945-7928.
      Name (in English): Cell Tracking based on Integer Linear Programming and Probability Scores
      English. United States of America.
      Type of proceedings: pre-proceedings
      International impact: yes
      Reviewed: yes
      Changed by: RNDr. Filip Lux, učo 456519. Changed: 20/3/2024 10:15.
      More: https://is.muni.cz/publication/2385779/en
    2. COMPYDA: An online tool for verifying the similarity of image datasets
      NEČASOVÁ, Tereza, Daniel MÚČKA and David SVOBODA. COMPYDA: An online tool for verifying the similarity of image datasets. Online. In 21st IEEE International Symposium on Biomedical Imaging. IEEE, 2024, 4 pp.
      English. Greece.
      Keywords in English: Web-service; Statistics; Data validation; Image descriptors; Privacy; Augmented data
      Type of proceedings: post-proceedings
      International impact: yes
      Reviewed: yes
      Changed by: RNDr. Tereza Nečasová, učo 390898. Changed: 28/2/2024 23:24.
      More: https://is.muni.cz/publication/2372158/en
    3. Generative modeling of living cells with SO(3)-equivariant implicit neural representations
      WIESNER, David, Julian SUK, Sven DUMMER, Tereza NEČASOVÁ, Ulman VLADIMÍR, David SVOBODA and Jelmer WOLTERINK. Generative modeling of living cells with SO(3)-equivariant implicit neural representations. Medical Image Analysis. Netherlands: Elsevier, 2024, vol. 2024, No 91, p. 102991-103008. ISSN 1361-8415. Available from: https://dx.doi.org/10.1016/j.media.2023.102991.
      URL
      RIV: Article in a journal. English. Switzerland.
      Wiesner, David (203 Czech Republic, belonging to the institution) -- Suk, Julian (528 Netherlands) -- Dummer, Sven (528 Netherlands) -- Nečasová, Tereza (203 Czech Republic, belonging to the institution) -- Vladimír, Ulman (203 Czech Republic) -- Svoboda, David (203 Czech Republic, guarantor, belonging to the institution) -- Wolterink, Jelmer (528 Netherlands)
      Keywords in English: cell shape modeling; neural networks; implicit neural representations; signed distance function; generative model; interpolation
      International impact: yes
      Reviewed: yes
      Changed by: RNDr. David Wiesner, Ph.D., učo 255597. Changed: 30/4/2024 14:23.
      More: https://is.muni.cz/publication/2324238/en
    4. Gravitational cell detection and tracking in fluorescence microscopy data
      EFTIMIU, Nikomidisz Jorgosz and Michal KOZUBEK. Gravitational cell detection and tracking in fluorescence microscopy data. In IEEE International Symposium on Biomedical Imaging 2024. IEEE, 2024.
      Name (in English): Gravitational cell detection and tracking in fluorescence microscopy data

      Keywords in English: Image analysis, cell detection, cell tracking, Cell Tracking Challenge
      Changed by: RNDr. Pavel Šmerk, Ph.D., učo 3880. Changed: 5/2/2024 10:38.
      More: https://is.muni.cz/publication/2369426/en
    5. MAPHIS-Measuring arthropod phenotypes using hierarchical image segmentations
      MRÁZ, Radoslav, Karel ŠTĚPKA, Matěj PEKÁR, Petr MATULA and Stanislav PEKÁR. MAPHIS-Measuring arthropod phenotypes using hierarchical image segmentations. Methods in Ecology and Evolution. HOBOKEN: WILEY, 2024, vol. 15, No 1, p. 36-42. ISSN 2041-210X. Available from: https://dx.doi.org/10.1111/2041-210X.14250.
      URL
      RIV: Article in a journal. English. United States of America.
      Mráz, Radoslav (703 Slovakia, belonging to the institution) -- Štěpka, Karel (203 Czech Republic, belonging to the institution) -- Pekár, Matěj (203 Czech Republic, belonging to the institution) -- Matula, Petr (203 Czech Republic, belonging to the institution) -- Pekár, Stanislav (703 Slovakia, guarantor, belonging to the institution)
      Keywords in English: arachnids; arthropods; convolutional neural networks; hierarchical segmentation; image analysis; insects; machine vision; morphological traits
      International impact: yes
      Reviewed: yes
      Changed by: Mgr. Marie Šípková, DiS., učo 437722. Changed: 29/2/2024 10:49.
      More: https://is.muni.cz/publication/2338797/en

    2023

    1. Segmentation and Tracking of Mammary Epithelial Organoids in Brightfield Microscopy
      HRADECKÁ, Lucia, David WIESNER, Jakub SUMBAL, Zuzana SUMBALOVÁ KOLEDOVÁ and Martin MAŠKA. Segmentation and Tracking of Mammary Epithelial Organoids in Brightfield Microscopy. IEEE Transactions on Medical Imaging. 2023, vol. 42, No 1, p. 281-290. ISSN 0278-0062. Available from: https://dx.doi.org/10.1109/TMI.2022.3210714.
      URL
      RIV/00216224:14330/23:00130029 Article in a journal. English. United States of America.
      Hradecká, Lucia (703 Slovakia, belonging to the institution) -- Wiesner, David (203 Czech Republic, belonging to the institution) -- Sumbal, Jakub (203 Czech Republic, belonging to the institution) -- Sumbalová Koledová, Zuzana (703 Slovakia, belonging to the institution) -- Maška, Martin (203 Czech Republic, guarantor, belonging to the institution)
      Keywords in English: organoid segmentation; organoid tracking; brightfield microscopy; deep learning; image synthesis
      International impact: yes
      Reviewed: yes
      Changed by: RNDr. Pavel Šmerk, Ph.D., učo 3880. Changed: 7/4/2024 22:32.
      More: https://is.muni.cz/publication/2220797/en
    2. The Cell Tracking Challenge: 10 years of objective benchmarking
      MAŠKA, Martin, Vladimír ULMAN, Pablo DELGADO-RODRIGUEZ, Estibaliz GÓMEZ-DE-MARISCAL, Tereza NEČASOVÁ, Fidel A Guerrero PEÑA, Tsang Ing REN, Elliot M MEYEROWITZ, Tim SCHERR, Katharina LÖFFLER, Ralf MIKUT, Tianqi GUO, Yin WANG, Jan P ALLEBACH, Rina BAO, Noor M AL-SHAKARJI, Gani RAHMON, Imad Eddine TOUBAL, Kannappan PALANIAPPAN, Filip LUX, Petr MATULA, Ko SUGAWARA, Klas E G MAGNUSSON, Layton AHO, Andrew R COHEN, Assaf ARBELLE, Tal BEN-HAIM, Tammy Riklin RAVIV, Fabian ISENSEE, Paul F JÄGER, Klaus H MAIER-HEIN, Yanming ZHU, Cristina EDERRA, Ainhoa URBIOLA, Erik MEIJERING, Alexandre CUNHA, Arrate MUÑOZ-BARRUTIA, Michal KOZUBEK and Carlos ORTIZ-DE-SOLÓRZANO. The Cell Tracking Challenge: 10 years of objective benchmarking. Nature Methods. 2023, vol. 20, No 7, p. 1010-1020. ISSN 1548-7091. Available from: https://dx.doi.org/10.1038/s41592-023-01879-y.
      URL
      RIV/00216224:14330/23:00130820 Article in a journal. English. United States of America.
      Maška, Martin (203 Czech Republic, guarantor, belonging to the institution) -- Ulman, Vladimír (203 Czech Republic, belonging to the institution) -- Delgado-Rodriguez, Pablo (724 Spain) -- Gómez-de-Mariscal, Estibaliz (724 Spain) -- Nečasová, Tereza (203 Czech Republic, belonging to the institution) -- Peña, Fidel A Guerrero (76 Brazil) -- Ren, Tsang Ing (840 United States of America) -- Meyerowitz, Elliot M (840 United States of America) -- Scherr, Tim (276 Germany) -- Löffler, Katharina (276 Germany) -- Mikut, Ralf (276 Germany) -- Guo, Tianqi (840 United States of America) -- Wang, Yin (840 United States of America) -- Allebach, Jan P (840 United States of America) -- Bao, Rina (840 United States of America) -- Al-Shakarji, Noor M (840 United States of America) -- Rahmon, Gani (840 United States of America) -- Toubal, Imad Eddine (840 United States of America) -- Palaniappan, Kannappan (840 United States of America) -- Lux, Filip (203 Czech Republic, belonging to the institution) -- Matula, Petr (203 Czech Republic, belonging to the institution) -- Sugawara, Ko (250 France) -- Magnusson, Klas E G (752 Sweden) -- Aho, Layton (840 United States of America) -- Cohen, Andrew R (840 United States of America) -- Arbelle, Assaf (376 Israel) -- Ben-Haim, Tal (376 Israel) -- Raviv, Tammy Riklin (376 Israel) -- Isensee, Fabian (276 Germany) -- Jäger, Paul F (276 Germany) -- Maier-Hein, Klaus H (276 Germany) -- Zhu, Yanming (36 Australia) -- Ederra, Cristina (724 Spain) -- Urbiola, Ainhoa (724 Spain) -- Meijering, Erik (36 Australia) -- Cunha, Alexandre (840 United States of America) -- Muñoz-Barrutia, Arrate (724 Spain) -- Kozubek, Michal (203 Czech Republic, belonging to the institution) -- Ortiz-de-Solórzano, Carlos (724 Spain)
      Keywords in English: cell segmentation;cell tracking;benchmarking
      International impact: yes
      Reviewed: yes
      Changed by: RNDr. Pavel Šmerk, Ph.D., učo 3880. Changed: 8/4/2024 15:39.
      More: https://is.muni.cz/publication/2285029/en

    2022

    1. Biomedical Image Synthesis and Simulation - Methods and Applications
      BURGOS, Ninon and David SVOBODA. Biomedical Image Synthesis and Simulation - Methods and Applications. 1st ed. Elsevier, 2022, 674 pp. ISBN 978-0-12-824349-7.
      URL
      English. United States of America.
      Keywords in English: image synthesis; medical imaging; simulations; biomedical; deep learning
      International impact: yes
      Changed by: RNDr. Pavel Šmerk, Ph.D., učo 3880. Changed: 29/3/2023 15:16.
      More: https://is.muni.cz/publication/1874331/en
    2. Federated learning enables big data for rare cancer boundary detection
      PATI, Sarthak, Ujjwal BAID, Brandon EDWARDS, Micah SHELLER, Shih-Han WANG, G Anthony REINA, Patrick FOLEY, Alexey GRUZDEV, Deepthi KARKADA, Christos DAVATZIKOS, Chiharu SAKO, Satyam GHODASARA, Michel BILELLO, Suyash MOHAN, Philipp VOLLMUTH, Gianluca BRUGNARA, Chandrakanth J PREETHA, Felix SAHM, Klaus MAIER-HEIN, Maximilian ZENK, Martin BENDSZUS, Wolfgang WICK, Evan CALABRESE, Jeffrey RUDIE, Javier VILLANUEVA-MEYER, Soonmee CHA, Madhura INGALHALIKAR, Manali JADHAV, Umang PANDEY, Jitender SAINI, John GARRETT, Matthew LARSON, Robert JERAJ, Stuart CURRIE, Russell FROOD, Kavi FATANIA, Raymond Y HUANG, Ken CHANG, Carmen Balaña QUINTERO, Jaume CAPELLADES, Josep PUIG, Johannes TRENKLER, Josef PICHLER, Georg NECKER, Andreas HAUNSCHMIDT, Stephan MECKEL, Gaurav SHUKLA, Spencer LIEM, Gregory S ALEXANDER, Joseph LOMBARDO, Joshua D PALMER, Adam E FLANDERS, Adam P DICKER, Haris I SAIR, Craig K JONES, Archana VENKATARAMAN, Meirui JIANG, Tiffany Y SO, Cheng CHEN, Pheng Ann HENG, Qi DOU, Michal KOZUBEK, Filip LUX, Jan MICHÁLEK, Petr MATULA, Miloš KEŘKOVSKÝ, Tereza KOPŘIVOVÁ, Marek DOSTÁL, Václav VYBÍHAL, Michael A VOGELBAUM, J Ross MITCHELL, Joaquim FARINHAS, Joseph A MALDJIAN, Chandan Ganesh Bangalore YOGANANDA, Marco C PINHO, Divya REDDY, James HOLCOMB, Benjamin C WAGNER, Benjamin M ELLINGSON, Timothy F CLOUGHESY, Catalina RAYMOND, Talia OUGHOURLIAN, Akifumi HAGIWARA, Chencai WANG, Minh-Son TO, Sargam BHARDWAJ, Chee CHONG, Marc AGZARIAN, Alexandre Xavier FALCÃO, Samuel B MARTINS, Bernardo C A TEIXEIRA, Flávia SPRENGER, David MENOTTI, Diego R LUCIO, Pamela LAMONTAGNE, Daniel MARCUS, Benedikt WIESTLER, Florian KOFLER, Ivan EZHOV, Marie METZ, Rajan JAIN, Matthew LEE, Yvonne W LUI, Richard MCKINLEY, Johannes SLOTBOOM, Piotr RADOJEWSKI, Raphael MEIER, Roland WIEST, Derrick MURCIA, Eric FU, Rourke HAAS, John THOMPSON, David Ryan ORMOND, Chaitra BADVE, Andrew E SLOAN, Vachan VADMAL, Kristin WAITE, Rivka R COLEN, Linmin PEI, Murat AK, Ashok SRINIVASAN, J Rajiv BAPURAJ, Arvind RAO, Nicholas WANG, Ota YOSHIAKI, Toshio MORITANI, Sevcan TURK, Joonsang LEE, Snehal PRABHUDESAI, Fanny MORÓN, Jacob MANDEL, Konstantinos KAMNITSAS, Ben GLOCKER, Luke V M DIXON, Matthew WILLIAMS, Peter ZAMPAKIS, Vasileios PANAGIOTOPOULOS, Panagiotis TSIGANOS, Sotiris ALEXIOU, Ilias HALIASSOS, Evangelia I ZACHARAKI, Konstantinos MOUSTAKAS, Christina KALOGEROPOULOU, Dimitrios M KARDAMAKIS, Yoon Seong CHOI, Seung-Koo LEE, Jong Hee CHANG, Sung Soo AHN, Bing LUO, Laila POISSON, Ning WEN, Pallavi TIWARI, Ruchika VERMA, Rohan BAREJA, Ipsa YADAV, Jonathan CHEN, Neeraj KUMAR, Marion SMITS, Sebastian R VAN DER VOORT, Ahmed ALAFANDI, Fatih INCEKARA, Maarten M J WIJNENGA, Georgios KAPSAS, Renske GAHRMANN, Joost W SCHOUTEN, Hendrikus J DUBBINK, Arnaud J P E VINCENT, Martin J VAN DEN BENT, Pim J FRENCH, Stefan KLEIN, Yading YUAN, Sonam SHARMA, Tzu-Chi TSENG, Saba ADABI, Simone P NICLOU, Olivier KEUNEN, Ann-Christin HAU, Martin VALLIÈRES, David FORTIN, Martin LEPAGE, Bennett LANDMAN, Karthik RAMADASS, Kaiwen XU, Silky CHOTAI, Lola B CHAMBLESS, Akshitkumar MISTRY, Reid C THOMPSON, Yuriy GUSEV, Krithika BHUVANESHWAR, Anousheh SAYAH, Camelia BENCHEQROUN, Anas BELOUALI, Subha MADHAVAN, Thomas C BOOTH, Alysha CHELLIAH, Marc MODAT, Haris SHUAIB, Carmen DRAGOS, Aly ABAYAZEED, Kenneth KOLODZIEJ, Michael HILL, Ahmed ABBASSY, Shady GAMAL, Mahmoud MEKHAIMAR, Mohamed QAYATI, Mauricio REYES, Ji Eun PARK, Jihye YUN, Ho Sung KIM, Abhishek MAHAJAN, Mark MUZI, Sean BENSON, Regina G H BEETS-TAN, Jonas TEUWEN, Alejandro HERRERA-TRUJILLO, Maria TRUJILLO, William ESCOBAR, Ana ABELLO, Jose BERNAL, Jhon GÓMEZ, Joseph CHOI, Stephen BAEK, Yusung KIM, Heba ISMAEL, Bryan ALLEN, John M BUATTI, Aikaterini KOTROTSOU, Hongwei LI, Tobias WEISS, Michael WELLER, Andrea BINK, Bertrand POUYMAYOU, Hassan F SHAYKH, Joel SALTZ, Prateek PRASANNA, Sampurna SHRESTHA, Kartik M MANI, David PAYNE, Tahsin KURC, Enrique PELAEZ, Heydy FRANCO-MALDONADO, Francis LOAYZA, Sebastian QUEVEDO, Pamela GUEVARA, Esteban TORCHE, Cristobal MENDOZA, Vera FRANCO, Elvis RÍOS, Eduardo LÓPEZ, Sergio A VELASTIN, Godwin OGBOLE, Mayowa SONEYE, Dotun OYEKUNLE, Olubunmi ODAFE-OYIBOTHA, Babatunde OSOBU, Mustapha SHU'AIBU, Adeleye DORCAS, Farouk DAKO, Amber L SIMPSON, Mohammad HAMGHALAM, Jacob J PEOPLES, Ricky HU, Anh TRAN, Danielle CUTLER, Fabio Y MORAES, Michael A BOSS, James GIMPEL, Deepak Kattil VEETTIL, Kendall SCHMIDT, Brian BIALECKI, Sailaja MARELLA, Cynthia PRICE, Lisa CIMINO, Charles APGAR, Prashant SHAH, Bjoern MENZE, Jill S BARNHOLTZ-SLOAN, Jason MARTIN and Spyridon BAKAS. Federated learning enables big data for rare cancer boundary detection. Nature Communications. London: Nature Publishing Group, 2022, vol. 13, No 7346, p. 1-17. ISSN 2041-1723. Available from: https://dx.doi.org/10.1038/s41467-022-33407-5.
      URL
      Name (in English): Federated learning enables big data for rare cancer boundary detection
      RIV/00216224:14330/22:00129718 Article in a journal. English. United Kingdom of Great Britain and Northern Ireland.
      Kozubek, Michal (203 Czech Republic, guarantor, belonging to the institution) -- Lux, Filip (203 Czech Republic, belonging to the institution) -- Michálek, Jan (203 Czech Republic, belonging to the institution) -- Matula, Petr (203 Czech Republic, belonging to the institution) -- Keřkovský, Miloš (203 Czech Republic, belonging to the institution) -- Kopřivová, Tereza (203 Czech Republic, belonging to the institution) -- Dostál, Marek (203 Czech Republic, belonging to the institution) -- Vybíhal, Václav (203 Czech Republic, belonging to the institution)
      Keywords in English: Biomedical engineering; CNS cancer; Computer science; Medical imaging; Medical research
      International impact: yes
      Reviewed: yes
      Changed by: RNDr. Pavel Šmerk, Ph.D., učo 3880. Changed: 18/8/2023 07:58.
      More: https://is.muni.cz/publication/2240109/en
    3. Implicit Neural Representations for Generative Modeling of Living Cell Shapes
      WIESNER, David, Julian SUK, Sven DUMMER, David SVOBODA and Jelmer WOLTERINK. Implicit Neural Representations for Generative Modeling of Living Cell Shapes. Online. In Linwei Wang, Qi Dou, P. Thomas Fletcher, Stefanie Speidel, Shuo Li. International Conference on Medical Image Computing and Computer Assisted Intervention. Switzerland: Springer Nature Switzerland, 2022, p. 58-67. ISBN 978-3-031-16439-2. Available from: https://dx.doi.org/10.1007/978-3-031-16440-8_6.
      URL
      Name in Czech: Implicitní neurální reprezentace pro generativní modelování tvaru živých buněk
      RIV/00216224:14330/22:00125774 Proceedings paper. English. Switzerland.
      Wiesner, David (203 Czech Republic, belonging to the institution) -- Suk, Julian (528 Netherlands) -- Dummer, Sven (528 Netherlands) -- Svoboda, David (203 Czech Republic, guarantor, belonging to the institution)
      Keywords in English: cell shape modeling; neural networks; implicit neural representations; signed distance function; generative model; interpolation
      Type of proceedings: post-proceedings
      International impact: yes
      Reviewed: yes
      Changed by: RNDr. Pavel Šmerk, Ph.D., učo 3880. Changed: 28/3/2023 10:42.
      More: https://is.muni.cz/publication/1851540/en
    4. Review of cell image synthesis for image processing
      ULMAN, Vladimír and David WIESNER. Review of cell image synthesis for image processing. In Ninon Burgos, David Svoboda. Biomedical Image Synthesis and Simulation - Methods and Applications. 1st ed. Neuveden: Elsevier, 2022, p. 447-489. The MICCAI Society book Series. ISBN 978-0-12-824349-7. Available from: https://dx.doi.org/10.1016/B978-0-12-824349-7.00028-1.
      URL
      RIV/00216224:14330/22:00126356 Chapter(s) of a specialized book. English. United States of America.
      Ulman, Vladimír (203 Czech Republic, guarantor) -- Wiesner, David (203 Czech Republic, belonging to the institution)
      Keywords in English: Image synthesis; Deep learning; Cell segmentation; Ground-truth data; Biomedical application
      International impact: yes
      Changed by: RNDr. Vladimír Ulman, Ph.D., učo 4203. Changed: 6/2/2023 22:26.
      More: https://is.muni.cz/publication/1883441/en
    5. Validation and evaluation metrics for medical and biomedical image synthesis
      NEČASOVÁ, Tereza, Ninon BURGOS and David SVOBODA. Validation and evaluation metrics for medical and biomedical image synthesis. In Ninon Burgos, David Svoboda. Biomedical Image Synthesis and Simulation - Methods and Applications. 1st ed. Neuveden: Elsevier, 2022, p. 573-600. The MICCAI Society book Series. ISBN 978-0-12-824349-7. Available from: https://dx.doi.org/10.1016/B978-0-12-824349-7.00032-3.
      URL
      RIV/00216224:14330/22:00126257 Chapter(s) of a specialized book. English. United States of America.
      Nečasová, Tereza (203 Czech Republic, guarantor, belonging to the institution) -- Burgos, Ninon (250 France) -- Svoboda, David (203 Czech Republic, belonging to the institution)
      Keywords in English: Image synthesis; Image simulation; Similarity;Distance metrics;Image datasets
      International impact: yes
      Changed by: RNDr. Pavel Šmerk, Ph.D., učo 3880. Changed: 28/3/2023 11:40.
      More: https://is.muni.cz/publication/1874640/en

    2021

    1. The Wavelet-Based Denoising Of Images in Fiji, With Example Applications in Structured Illumination Microscopy
      ČAPEK, Martin, Michaela BLAŽÍKOVÁ, Ivan NOVOTNÝ, Helena CHMELOVÁ, David SVOBODA, Barbora RADOCHOVÁ, Jiří JANÁČEK and Ondrej HORVÁTH. The Wavelet-Based Denoising Of Images in Fiji, With Example Applications in Structured Illumination Microscopy. Image Analysis & Stereology. International Society for Stereology & Image Analysis, 2021, vol. 40, No 1, p. 3-16. ISSN 1580-3139. Available from: https://dx.doi.org/10.5566/ias.2432.
      URL
      RIV/00216224:14330/21:00121362 Article in a journal. English. Slovenia.
      Čapek, Martin (203 Czech Republic) -- Blažíková, Michaela (203 Czech Republic) -- Novotný, Ivan (203 Czech Republic) -- Chmelová, Helena (203 Czech Republic) -- Svoboda, David (203 Czech Republic, guarantor, belonging to the institution) -- Radochová, Barbora (203 Czech Republic) -- Janáček, Jiří (203 Czech Republic)
      Keywords in English: discrete wavelet transform; Fiji plugin; image filtration; structured illumination microscopy
      International impact: yes
      Reviewed: yes
      Changed by: doc. RNDr. David Svoboda, Ph.D., učo 2824. Changed: 10/6/2021 22:19.
      More: https://is.muni.cz/publication/1758062/en
    2. Topology Preserving Segmentation Fusion for Cells with Complex Shapes
      MELNIKOVA, Aleksandra and Petr MATULA. Topology Preserving Segmentation Fusion for Cells with Complex Shapes. Online. In The IEEE International Symposium on Biomedical Imaging. Nice: IEEE, 2021, p. 204-207. ISBN 978-1-6654-1246-9. Available from: https://dx.doi.org/10.1109/ISBI48211.2021.9433867.
      Name (in English): Topology Preserving Segmentation Fusion for Cells with Complex Shapes
      RIV/00216224:14330/21:00118940 Proceedings paper. English.
      Melnikova, Aleksandra (643 Russian Federation, belonging to the institution) -- Matula, Petr (203 Czech Republic, guarantor, belonging to the institution)
      Keywords in English: Segmentation fusion; Reference annotation; Cell annotation; Shape
      Type of proceedings: post-proceedings
      International impact: yes
      Reviewed: yes
      Changed by: Mgr. Michal Petr, učo 65024. Changed: 16/5/2022 14:56.
      More: https://is.muni.cz/publication/1762543/en
    3. Transfer Learning in Optical Microscopy
      KOZLOVSKÝ, Martin, David WIESNER and David SVOBODA. Transfer Learning in Optical Microscopy. Online. In Svoboda D., Burgos N., Wolterink J., Zhao C. Simulation and Synthesis in Medical Imaging. LNCS 12965. Neuveden: Springer, 2021, p. 77-86. ISBN 978-3-030-87591-6. Available from: https://dx.doi.org/10.1007/978-3-030-87592-3_8.
      URL
      RIV/00216224:14330/21:00122077 Proceedings paper. English. Germany.
      Kozlovský, Martin (203 Czech Republic, belonging to the institution) -- Wiesner, David (203 Czech Republic, belonging to the institution) -- Svoboda, David (203 Czech Republic, guarantor, belonging to the institution)
      Keywords in English: Fluorescence microscopy; Phase-contrast microscopy; GAN; Image synthesis; Machine learning
      Type of proceedings: post-proceedings
      International impact: yes
      Reviewed: yes
      Changed by: RNDr. Pavel Šmerk, Ph.D., učo 3880. Changed: 13/5/2024 16:28.
      More: https://is.muni.cz/publication/1785739/en

    2020

    1. BIAFLOWS: A Collaborative Framework to Reproducibly Deploy and Benchmark Bioimage Analysis Workflows
      RUBENS, Ulysse, Romain MORMONT, Lassi PAAVOLAINEN, Volker BÄCKER, Benjamin PAVIE, Leandro A. SCHOLZ, Gino MICHIELS, Martin MAŠKA, Devrim ÜNAY, Graeme BALL, Renaud HOYOUX, Rémy VANDAELE, Ofra GOLANI, Stefan G. STANCIU, Natasa SLADOJE, Perrine PAUL-GILLOTEAUX, Raphaël MARÉE and Sébastien TOSI. BIAFLOWS: A Collaborative Framework to Reproducibly Deploy and Benchmark Bioimage Analysis Workflows. Patterns. Cell Press, 2020, vol. 1, No 3, p. 1-10. ISSN 2666-3899. Available from: https://dx.doi.org/10.1016/j.patter.2020.100040.
      URL
      RIV/00216224:14330/20:00115769 Article in a journal. English. United States of America.
      Rubens, Ulysse (56 Belgium) -- Mormont, Romain (56 Belgium) -- Paavolainen, Lassi (246 Finland) -- Bäcker, Volker (250 France) -- Pavie, Benjamin (56 Belgium) -- Scholz, Leandro A. (76 Brazil) -- Michiels, Gino (56 Belgium) -- Maška, Martin (203 Czech Republic, guarantor, belonging to the institution) -- Ünay, Devrim (792 Turkey) -- Ball, Graeme (826 United Kingdom of Great Britain and Northern Ireland) -- Hoyoux, Renaud (826 United Kingdom of Great Britain and Northern Ireland) -- Vandaele, Rémy (56 Belgium) -- Golani, Ofra (376 Israel) -- Stanciu, Stefan G. (642 Romania) -- Sladoje, Natasa (752 Sweden) -- Paul-Gilloteaux, Perrine (250 France) -- Marée, Raphaël (56 Belgium) -- Tosi, Sébastien (724 Spain)
      Keywords in English: image analysis; software benchmarking; deployment; reproducibility; bioimaging; deep learning
      International impact: yes
      Reviewed: yes
      Changed by: RNDr. Pavel Šmerk, Ph.D., učo 3880. Changed: 14/5/2021 05:55.
      More: https://is.muni.cz/publication/1661361/en
    2. BIAS: Transparent reporting of biomedical image analysis challenges
      MAIER-HEIN, Lena, Annika REINKE, Michal KOZUBEK, Anne L. MARTEL, Tal ARBEL, Matthias EISENMANN, Allan HANBURY, Pierre JANNIN, Henning MÜLLER, Sinan ONOGUR, Julio SAEZ-RODRIGUEZ, Bram VAN GINNEKEN, Annette KOPP-SCHNEIDER and Bennett A. LANDMAN. BIAS: Transparent reporting of biomedical image analysis challenges. Medical Image Analysis. Elsevier, 2020, vol. 66, No 101796, p. 1-7. ISSN 1361-8415. Available from: https://dx.doi.org/10.1016/j.media.2020.101796.
      URL
      RIV/00216224:14330/20:00116355 Article in a journal. English. Netherlands.
      Maier-Hein, Lena (276 Germany) -- Reinke, Annika (276 Germany) -- Kozubek, Michal (203 Czech Republic, guarantor, belonging to the institution) -- Martel, Anne L. (124 Canada) -- Arbel, Tal (124 Canada) -- Eisenmann, Matthias (276 Germany) -- Hanbury, Allan (40 Austria) -- Jannin, Pierre (250 France) -- Müller, Henning (756 Switzerland) -- Onogur, Sinan (276 Germany) -- Saez-Rodriguez, Julio (276 Germany) -- van Ginneken, Bram (528 Netherlands) -- Kopp-Schneider, Annette (276 Germany) -- Landman, Bennett A. (840 United States of America)
      Keywords in English: Biomedical challenges;Good scientific practice;Biomedical image analysis;Guideline
      International impact: yes
      Reviewed: yes
      Changed by: RNDr. Pavel Šmerk, Ph.D., učo 3880. Changed: 14/6/2022 12:29.
      More: https://is.muni.cz/publication/1677718/en
    3. Condensed U-Net (CU-Net): An Improved U-Net Architecture for Cell Segmentation Powered by 4x4 Max-Pooling Layers
      AKBAS, Cem Emre and Michal KOZUBEK. Condensed U-Net (CU-Net): An Improved U-Net Architecture for Cell Segmentation Powered by 4x4 Max-Pooling Layers. Online. In IEEE 17th International Symposium on Biomedical Imaging. Iowa: IEEE, 2020, p. 446-450. ISBN 978-1-5386-9330-8. Available from: https://dx.doi.org/10.1109/ISBI45749.2020.9098351.
      URL
      RIV/00216224:14330/20:00115503 Proceedings paper. English. United States of America.
      Akbas, Cem Emre (792 Turkey, belonging to the institution) -- Kozubek, Michal (203 Czech Republic, guarantor, belonging to the institution)
      Keywords in English: Biomedical Image Segmentation; Convolutional Neural Networks; Deep Learning; Feature Learning; Max Pooling
      Type of proceedings: post-proceedings
      International impact: yes
      Reviewed: yes
      Changed by: RNDr. Pavel Šmerk, Ph.D., učo 3880. Changed: 10/5/2021 05:41.
      More: https://is.muni.cz/publication/1644098/en
    4. Image-based Simulations of Tubular Network Formation
      SVOBODA, David and Tereza NEČASOVÁ. Image-based Simulations of Tubular Network Formation. Online. In 17th IEEE International Symposium on Biomedical Imaging. Neuveden: IEEE, 2020, p. 1608-1612. ISBN 978-1-5386-9330-8. Available from: https://dx.doi.org/10.1109/ISBI45749.2020.9098736.
      URL
      RIV/00216224:14330/20:00114090 Proceedings paper. English. United States of America.
      Svoboda, David (203 Czech Republic, guarantor, belonging to the institution) -- Nečasová, Tereza (203 Czech Republic, belonging to the institution)
      Keywords in English: Light Microscopy; Confocal Microscopy; Fluorescence Microscopy; Cells & molecules; Image synthesis
      Type of proceedings: post-proceedings
      International impact: yes
      Reviewed: yes
      Changed by: RNDr. Pavel Šmerk, Ph.D., učo 3880. Changed: 29/4/2021 12:25.
      More: https://is.muni.cz/publication/1643137/en
    5. Lactic Acidosis Interferes With Toxicity of Perifosine to Colorectal Cancer Spheroids: Multimodal Imaging Analysis
      PAVLATOVSKÁ, Barbora, Markéta MACHÁLKOVÁ, Petra BRISUDOVÁ, Adam PRUŠKA, Karel ŠTĚPKA, Jan MICHÁLEK, Tereza NEČASOVÁ, Petr BENEŠ, Jan ŠMARDA, Jan PREISLER, Michal KOZUBEK and Jarmila NAVRÁTILOVÁ. Lactic Acidosis Interferes With Toxicity of Perifosine to Colorectal Cancer Spheroids: Multimodal Imaging Analysis. Frontiers in Oncology. Lausanne: Frontiers Media S.A., 2020, vol. 10, December, p. 1-18. ISSN 2234-943X. Available from: https://dx.doi.org/10.3389/fonc.2020.581365.
      URL
      RIV/00216224:14310/20:00117367 Article in a journal. English. Switzerland.
      Pavlatovská, Barbora (203 Czech Republic, belonging to the institution) -- Machálková, Markéta (203 Czech Republic, belonging to the institution) -- Brisudová, Petra (703 Slovakia, belonging to the institution) -- Štěpka, Karel (203 Czech Republic, belonging to the institution) -- Michálek, Jan (203 Czech Republic, belonging to the institution) -- Nečasová, Tereza (203 Czech Republic, belonging to the institution) -- Beneš, Petr (203 Czech Republic, belonging to the institution) -- Šmarda, Jan (203 Czech Republic, belonging to the institution) -- Preisler, Jan (203 Czech Republic, belonging to the institution) -- Kozubek, Michal (203 Czech Republic, belonging to the institution) -- Navrátilová, Jarmila (203 Czech Republic, guarantor, belonging to the institution)
      Keywords in English: perifosine; Akt kinase; tumor environment; lactic acidosis; alkalization; signal co-registration; mass spectrometry imaging; colorectal cancer
      International impact: yes
      Reviewed: yes
      Changed by: Mgr. Marie Šípková, DiS., učo 437722. Changed: 14/1/2021 13:37.
      More: https://is.muni.cz/publication/1709996/en
    6. When Deep Learning Meets Cell Image Synthesis
      KOZUBEK, Michal. When Deep Learning Meets Cell Image Synthesis. Cytometry Part A. John Wiley & Sons, 2020, vol. 97, No 3, p. 222-225. ISSN 1552-4922. Available from: https://dx.doi.org/10.1002/cyto.a.23957.
      URL
      English. United States of America.
      Keywords in English: cell image synthesis; deep learning; style transfer; generative adversarial networks
      International impact: yes
      Changed by: RNDr. Pavel Šmerk, Ph.D., učo 3880. Changed: 27/4/2020 22:45.
      More: https://is.muni.cz/publication/1633798/en

    2019

    1. A Behavioral Assay to Study Effects of Retinoid Pharmacology on Nervous System Development in a Marine Annelid
      HANDBERG-THORSAGER, Mette, Vladimír ULMAN, Pavel TOMANČÁK, D. ARENDT and M. SCHUBERT. A Behavioral Assay to Study Effects of Retinoid Pharmacology on Nervous System Development in a Marine Annelid. In Swapan K. Ray. Retinoid and Rexinoid Signaling. Springer, 2019, p. 193-207. ISBN 978-1-4939-9584-4. Available from: https://dx.doi.org/10.1007/978-1-4939-9585-1_14.
      English. Germany.
      International impact: yes
      Reviewed: yes
      Changed by: RNDr. Vladimír Ulman, Ph.D., učo 4203. Changed: 24/10/2020 23:26.
      More: https://is.muni.cz/publication/1686859/en
    2. Automatic Fusion of Segmentation and Tracking Labels
      AKBAŞ, Cem Emre, Vladimír ULMAN, Martin MAŠKA, Florian JUG and Michal KOZUBEK. Automatic Fusion of Segmentation and Tracking Labels. In Laura Leal-Taixé, Stefan Roth. Computer Vision – ECCV 2018 Workshops. LNCS 11134. Switzerland: Springer Nature, 2019, p. 446-454. ISBN 978-3-030-11023-9. Available from: https://dx.doi.org/10.1007/978-3-030-11024-6_34.
      URL
      RIV/00216224:14330/19:00107241 Proceedings paper. English. Switzerland.
      Akbaş, Cem Emre (792 Turkey, guarantor, belonging to the institution) -- Ulman, Vladimír (203 Czech Republic, belonging to the institution) -- Maška, Martin (203 Czech Republic, belonging to the institution) -- Jug, Florian (276 Germany) -- Kozubek, Michal (203 Czech Republic, belonging to the institution)
      Keywords in English: Label fusion; Image annotation; Segmentation labels; Tracking labels
      Type of proceedings: post-proceedings
      International impact: yes
      Reviewed: yes
      Changed by: RNDr. Pavel Šmerk, Ph.D., učo 3880. Changed: 28/4/2020 00:13.
      More: https://is.muni.cz/publication/1490221/en
    3. CytoPacq: A web-interface for simulating multi-dimensional cell imaging
      WIESNER, David, David SVOBODA, Martin MAŠKA and Michal KOZUBEK. CytoPacq: A web-interface for simulating multi-dimensional cell imaging. Bioinformatics. Oxford University Press, 2019, vol. 35, No 21, p. 4531-4533. ISSN 1367-4803. Available from: https://dx.doi.org/10.1093/bioinformatics/btz417.
      URL
      RIV/00216224:14330/19:00107401 Article in a journal. English. United Kingdom of Great Britain and Northern Ireland.
      Wiesner, David (203 Czech Republic, belonging to the institution) -- Svoboda, David (203 Czech Republic, belonging to the institution) -- Maška, Martin (203 Czech Republic, belonging to the institution) -- Kozubek, Michal (203 Czech Republic, guarantor, belonging to the institution)
      Keywords in English: Simulation; Mathematical modeling; Benchmarking; Cell imaging; Web services
      International impact: yes
      Reviewed: yes
      Changed by: RNDr. Pavel Šmerk, Ph.D., učo 3880. Changed: 27/4/2020 22:11.
      More: https://is.muni.cz/publication/1530976/en
    4. Deep-Learning-Based Segmentation of Small Extracellular Vesicles in Transmission Electron Microscopy Images
      GÓMEZ-DE-MARISCAL, Estibaliz, Martin MAŠKA, Anna KOTRBOVÁ, Vendula POSPÍCHALOVÁ, Pavel MATULA and Arrate MUÑOZ-BARRUTIA. Deep-Learning-Based Segmentation of Small Extracellular Vesicles in Transmission Electron Microscopy Images. Scientific Reports. 2019, vol. 9, No 13211, p. 1-10. ISSN 2045-2322. Available from: https://dx.doi.org/10.1038/s41598-019-49431-3.
      URL
      RIV/00216224:14330/19:00107638 Article in a journal. English. United States of America.
      Gómez-de-Mariscal, Estibaliz (724 Spain) -- Maška, Martin (203 Czech Republic, guarantor, belonging to the institution) -- Kotrbová, Anna (203 Czech Republic, belonging to the institution) -- Pospíchalová, Vendula (203 Czech Republic, belonging to the institution) -- Matula, Pavel (203 Czech Republic, belonging to the institution) -- Muñoz-Barrutia, Arrate (724 Spain)
      Keywords in English: image segmentation;deep learning;smal extracellular vesicles;transmission electron microscopy
      International impact: yes
      Reviewed: yes
      Changed by: RNDr. Pavel Šmerk, Ph.D., učo 3880. Changed: 14/6/2022 12:09.
      More: https://is.muni.cz/publication/1557819/en
    5. DIC Image Segmentation of Dense Cell Populations by Combining Deep Learning and Watershed
      LUX, Filip and Petr MATULA. DIC Image Segmentation of Dense Cell Populations by Combining Deep Learning and Watershed. Online. In IEEE 16th International Symposium on Biomedical Imaging. Venice, Italy, Italy: IEEE 16th International Symposium on Biomedical Imaging, 2019, p. 236-239. ISBN 978-1-5386-3641-1. Available from: https://dx.doi.org/10.1109/ISBI.2019.8759594.
      URL
      RIV/00216224:14330/19:00107237 Proceedings paper. English. United States of America.
      Lux, Filip (203 Czech Republic, guarantor, belonging to the institution) -- Matula, Petr (203 Czech Republic, belonging to the institution)
      Keywords in English: Image Segmentation; Differential Interface Contrast; Convolutional Neural Networks; Watershed
      International impact: yes
      Reviewed: yes
      Changed by: RNDr. Pavel Šmerk, Ph.D., učo 3880. Changed: 28/4/2020 16:27.
      More: https://is.muni.cz/publication/1488155/en
    6. Drug Penetration Analysis in 3D Cell Cultures Using Fiducial-Based Semiautomatic Coregistration of MALDI MSI and Immunofluorescence Images
      MACHÁLKOVÁ, Markéta, Barbora PAVLATOVSKÁ, Jan MICHÁLEK, Adam PRUŠKA, Karel ŠTĚPKA, Tereza NEČASOVÁ, Katarzyna Anna RADASZKIEWICZ, Michal KOZUBEK, Jan ŠMARDA, Jan PREISLER and Jarmila NAVRÁTILOVÁ. Drug Penetration Analysis in 3D Cell Cultures Using Fiducial-Based Semiautomatic Coregistration of MALDI MSI and Immunofluorescence Images. Analytical Chemistry. American Chemical Society, 2019, vol. 91, No 21, p. 13475-13484. ISSN 0003-2700. Available from: https://dx.doi.org/10.1021/acs.analchem.9b02462.
      URL
      RIV/00216224:14310/19:00111447 Article in a journal. English. United States of America.
      Machálková, Markéta (203 Czech Republic, belonging to the institution) -- Pavlatovská, Barbora (203 Czech Republic, belonging to the institution) -- Michálek, Jan (203 Czech Republic, belonging to the institution) -- Pruška, Adam (203 Czech Republic, belonging to the institution) -- Štěpka, Karel (203 Czech Republic, belonging to the institution) -- Nečasová, Tereza (203 Czech Republic, belonging to the institution) -- Radaszkiewicz, Katarzyna Anna (616 Poland, belonging to the institution) -- Kozubek, Michal (203 Czech Republic, belonging to the institution) -- Šmarda, Jan (203 Czech Republic, belonging to the institution) -- Preisler, Jan (203 Czech Republic, belonging to the institution) -- Navrátilová, Jarmila (203 Czech Republic, guarantor, belonging to the institution)
      Keywords in English: MALDI MSI; LSCM; IHC; multimodal imaging; spheroids; coregistration; image analysis
      International impact: yes
      Reviewed: yes
      Changed by: prof. Mgr. Jan Preisler, Ph.D., učo 45329. Changed: 16/4/2020 11:29.
      More: https://is.muni.cz/publication/1583136/en
    7. Fast and accurate compensation of signal offset for T2 mapping
      MICHÁLEK, Jan, Pavla HANZLÍKOVÁ, Tuan TRINH and Dalibor PACÍK. Fast and accurate compensation of signal offset for T2 mapping. Magnetic Resonance Materials in Physics, Biology and Medicine. Springer International Publishing, 2019, vol. 32, No 4, p. 423-436. ISSN 0968-5243. Available from: https://dx.doi.org/10.1007/s10334-019-00737-3.
      URL
      RIV/00216224:14330/19:00109168 Article in a journal. English. United States of America.
      Michálek, Jan (203 Czech Republic, guarantor, belonging to the institution) -- Hanzlíková, Pavla (203 Czech Republic) -- Trinh, Tuan (203 Czech Republic, belonging to the institution) -- Pacík, Dalibor (203 Czech Republic)
      Keywords in English: Algorithms; Least-squares analysis; Software
      International impact: yes
      Reviewed: yes
      Changed by: RNDr. Pavel Šmerk, Ph.D., učo 3880. Changed: 15/4/2020 13:17.
      More: https://is.muni.cz/publication/1498876/en
    8. On Generative Modeling of Cell Shape Using 3D GANs
      WIESNER, David, Tereza NEČASOVÁ and David SVOBODA. On Generative Modeling of Cell Shape Using 3D GANs. Online. In Ricci Elisa, Rota Buló Samuel, Snoek Cees, Lanz Oswald, Messelodi Stefano, Sebe Nicu. Image Analysis and Processing – ICIAP 2019. LNCS 11752. Trento: Springer, 2019, p. 672-682. ISBN 978-3-030-30644-1. Available from: https://dx.doi.org/10.1007/978-3-030-30645-8_61.
      URL
      RIV/00216224:14330/19:00107522 Proceedings paper. English. United States of America.
      Wiesner, David (203 Czech Republic, guarantor, belonging to the institution) -- Nečasová, Tereza (203 Czech Republic, belonging to the institution) -- Svoboda, David (203 Czech Republic, belonging to the institution)
      Keywords in English: Image-based Simulations; 3D GAN; Training Stability; Microscopy Data; Digital Cell Shape
      Type of proceedings: pre-proceedings
      International impact: yes
      Reviewed: yes
      Changed by: RNDr. David Wiesner, Ph.D., učo 255597. Changed: 11/1/2023 14:24.
      More: https://is.muni.cz/publication/1546941/en
    9. Quantitative Assessment of Anti-Cancer Drug Efficacy From Coregistered Mass Spectrometry and Fluorescence Microscopy Images of Multicellular Tumor Spheroids
      MICHÁLEK, Jan, Karel ŠTĚPKA, Michal KOZUBEK, Jarmila NAVRÁTILOVÁ, Barbora PAVLATOVSKÁ, Markéta MACHÁLKOVÁ, Jan PREISLER and Adam PRUŠKA. Quantitative Assessment of Anti-Cancer Drug Efficacy From Coregistered Mass Spectrometry and Fluorescence Microscopy Images of Multicellular Tumor Spheroids. Microscopy and Microanalysis. Cambridge University Press, 2019, vol. 25, No 6, p. 1311-1322. ISSN 1431-9276. Available from: https://dx.doi.org/10.1017/S1431927619014983.
      URL
      RIV/00216224:14330/19:00110913 Article in a journal. English. United States of America.
      Michálek, Jan (203 Czech Republic, guarantor, belonging to the institution) -- Štěpka, Karel (203 Czech Republic, belonging to the institution) -- Kozubek, Michal (203 Czech Republic, belonging to the institution) -- Navrátilová, Jarmila (203 Czech Republic, belonging to the institution) -- Pavlatovská, Barbora (203 Czech Republic, belonging to the institution) -- Machálková, Markéta (203 Czech Republic, belonging to the institution) -- Preisler, Jan (203 Czech Republic, belonging to the institution) -- Pruška, Adam (203 Czech Republic, belonging to the institution)
      Keywords in English: confocal microscopy; image registration; MALDI MS; mass spectrometry imaging; peeling
      International impact: yes
      Reviewed: yes
      Changed by: Mgr. Marie Šípková, DiS., učo 437722. Changed: 15/1/2021 08:47.
      More: https://is.muni.cz/publication/1567999/en
    10. TEM ExosomeAnalyzer: a computer-assisted software tool for quantitative evaluation of extracellular vesicles in transmission electron microscopy images
      KOTRBOVÁ, Anna, Karel ŠTĚPKA, Martin MAŠKA, Juraj PÁLENIK, Ladislav ILKOVICS, Dobromila KLEMOVÁ, Marek KRAVEC, František HUBATKA, Zankruti DAVE, Aleš HAMPL, Vítězslav BRYJA, Pavel MATULA and Vendula POSPÍCHALOVÁ. TEM ExosomeAnalyzer: a computer-assisted software tool for quantitative evaluation of extracellular vesicles in transmission electron microscopy images. Journal of Extracellular Vesicles. Taylor and Francis Ltd., 2019, vol. 8, No 1, p. 1-13. ISSN 2001-3078. Available from: https://dx.doi.org/10.1080/20013078.2018.1560808.
      Full Text
      RIV/00216224:14310/19:00107476 Article in a journal. English. United Kingdom of Great Britain and Northern Ireland.
      Kotrbová, Anna (203 Czech Republic, belonging to the institution) -- Štěpka, Karel (203 Czech Republic, belonging to the institution) -- Maška, Martin (203 Czech Republic, belonging to the institution) -- Pálenik, Juraj (703 Slovakia, belonging to the institution) -- Ilkovics, Ladislav (203 Czech Republic, belonging to the institution) -- Klemová, Dobromila (203 Czech Republic, belonging to the institution) -- Kravec, Marek (703 Slovakia, belonging to the institution) -- Hubatka, František (203 Czech Republic) -- Dave, Zankruti (356 India, belonging to the institution) -- Hampl, Aleš (203 Czech Republic, belonging to the institution) -- Bryja, Vítězslav (203 Czech Republic, belonging to the institution) -- Matula, Pavel (203 Czech Republic, belonging to the institution) -- Pospíchalová, Vendula (203 Czech Republic, guarantor, belonging to the institution)
      Keywords in English: Exosome; cryo-electron microscopy; extracellular vesicles; image analysis; morphological seeded watershed; negative staining; segmentation; semi-automatic detection; size distribution profile; transmission electron microscopy
      International impact: yes
      Reviewed: yes
      Changed by: doc. RNDr. Pavel Matula, Ph.D., učo 2927. Changed: 9/2/2022 09:11.
      More: https://is.muni.cz/publication/1542776/en
    11. The Effect of Uncoated SPIONs on hiPSC-Differentiated Endothelial Cells
      ŠALINGOVÁ, Barbara, Pavel ŠIMARA, Pavel MATULA, Lenka ZAJÍČKOVÁ, Petr SYNEK, Ondřej JAŠEK, Lenka VEVERKOVÁ, Miroslava SEDLÁČKOVÁ, Zuzana NICHTOVA and Irena KOUTNÁ. The Effect of Uncoated SPIONs on hiPSC-Differentiated Endothelial Cells. International Journal of Molecular Sciences. BASEL: Molecular Diversity Preservation International, 2019, vol. 20, No 14, p. 1-16. ISSN 1422-0067. Available from: https://dx.doi.org/10.3390/ijms20143536.
      URL
      RIV/00216224:14110/19:00108522 Article in a journal. English. Switzerland.
      Šalingová, Barbara (203 Czech Republic, belonging to the institution) -- Šimara, Pavel (203 Czech Republic, belonging to the institution) -- Matula, Pavel (203 Czech Republic, belonging to the institution) -- Zajíčková, Lenka (203 Czech Republic, belonging to the institution) -- Synek, Petr (203 Czech Republic, belonging to the institution) -- Jašek, Ondřej (203 Czech Republic, belonging to the institution) -- Veverková, Lenka (203 Czech Republic, belonging to the institution) -- Sedláčková, Miroslava (203 Czech Republic, belonging to the institution) -- Nichtova, Zuzana (703 Slovakia) -- Koutná, Irena (203 Czech Republic, guarantor, belonging to the institution)
      Keywords in English: superparamagnetic iron-oxide nanoparticles; human induced pluripotent stem cell-derived endothelial cells; reprogramming; differentiation; mature endothelial cells
      International impact: yes
      Reviewed: yes
      Changed by: Mgr. Marie Šípková, DiS., učo 437722. Changed: 11/10/2022 12:50.
      More: https://is.muni.cz/publication/1568956/en
    12. Toward Robust Fully 3D Filopodium Segmentation and Tracking in Time-Lapse Fluorescence Microscopy
      MAŠKA, Martin, Tereza NEČASOVÁ, David WIESNER, Dmitry SOROKIN, Igor PETERLÍK, Vladimír ULMAN and David SVOBODA. Toward Robust Fully 3D Filopodium Segmentation and Tracking in Time-Lapse Fluorescence Microscopy. Online. In 26th IEEE International Conference on Image Processing. Taipei: IEEE, 2019, p. 819-823. ISBN 978-1-5386-6249-6. Available from: https://dx.doi.org/10.1109/ICIP.2019.8803721.
      URL
      RIV/00216224:14330/19:00107396 Proceedings paper. English. United States of America.
      Maška, Martin (203 Czech Republic, guarantor, belonging to the institution) -- Nečasová, Tereza (203 Czech Republic, belonging to the institution) -- Wiesner, David (203 Czech Republic, belonging to the institution) -- Sorokin, Dmitry (643 Russian Federation) -- Peterlík, Igor (703 Slovakia, belonging to the institution) -- Ulman, Vladimír (203 Czech Republic) -- Svoboda, David (203 Czech Republic, belonging to the institution)
      Keywords in English: Benchmark dataset; synthetic image data; filopodium segmentation; filopodium tracking
      Type of proceedings: pre-proceedings
      International impact: yes
      Reviewed: yes
      Changed by: RNDr. Pavel Šmerk, Ph.D., učo 3880. Changed: 28/4/2020 16:28.
      More: https://is.muni.cz/publication/1530536/en
    13. Visual and Quantitative Comparison of Real and Simulated Biomedical Image Data
      NEČASOVÁ, Tereza and David SVOBODA. Visual and Quantitative Comparison of Real and Simulated Biomedical Image Data. In Laura Leal-Taixé, Stefan Roth. Computer Vision – ECCV 2018 Workshops. LNCS 11134. Munich, Germany: Springer, 2019, p. 385-394. ISBN 978-3-030-11023-9. Available from: https://dx.doi.org/10.1007/978-3-030-11024-6_28.
      URL
      RIV/00216224:14330/19:00107168 Proceedings paper. English. Germany.
      Nečasová, Tereza (203 Czech Republic, belonging to the institution) -- Svoboda, David (203 Czech Republic, belonging to the institution)
      Keywords in English: Feature comparison; Validation of simulation; Statistical evaluation; Similarity visualisation
      Type of proceedings: post-proceedings
      International impact: yes
      Reviewed: yes
      Changed by: RNDr. Pavel Šmerk, Ph.D., učo 3880. Changed: 27/4/2020 22:24.
      More: https://is.muni.cz/publication/1427778/en
    14. 3-D Quantification of Filopodia in Motile Cancer Cells
      CASTILLA, Carlos, Martin MAŠKA, Dmitry SOROKIN, Erik MEIJERING and Carlos ORTIZ-DE-SOLÓRZANO. 3-D Quantification of Filopodia in Motile Cancer Cells. IEEE Transactions on Medical Imaging. IEEE, 2019, vol. 38, No 3, p. 862-872. ISSN 0278-0062. Available from: https://dx.doi.org/10.1109/TMI.2018.2873842.
      URL
      RIV/00216224:14330/19:00107178 Article in a journal. English. United States of America.
      Castilla, Carlos (724 Spain) -- Maška, Martin (203 Czech Republic, guarantor, belonging to the institution) -- Sorokin, Dmitry (643 Russian Federation, belonging to the institution) -- Meijering, Erik (528 Netherlands) -- Ortiz-de-Solórzano, Carlos (724 Spain)
      Keywords in English: Filopodium segmentation and tracking;actin cytoskeleton;confocal microscopy;3D skeletonization;Chan-Vese model;convolutional neural network;deep learning
      International impact: yes
      Reviewed: yes
      Changed by: RNDr. Pavel Šmerk, Ph.D., učo 3880. Changed: 12/4/2020 08:31.
      More: https://is.muni.cz/publication/1442158/en

    2018

    1. FiloGen: A Model-Based Generator of Synthetic 3-D Time-Lapse Sequences of Single Motile Cells with Growing and Branching Filopodia
      SOROKIN, Dmitry, Igor PETERLÍK, Vladimír ULMAN, David SVOBODA, Tereza NEČASOVÁ, Katsiarina MORGAENKO, Lívia EISELLEOVÁ, Lenka TESAŘOVÁ and Martin MAŠKA. FiloGen: A Model-Based Generator of Synthetic 3-D Time-Lapse Sequences of Single Motile Cells with Growing and Branching Filopodia. IEEE Transactions on Medical Imaging. IEEE, 2018, vol. 37, No 12, p. 2630-2641. ISSN 0278-0062. Available from: https://dx.doi.org/10.1109/TMI.2018.2845884.
      URL
      RIV/00216224:14330/18:00101012 Article in a journal. English. United States of America.
      Sorokin, Dmitry (643 Russian Federation, belonging to the institution) -- Peterlík, Igor (703 Slovakia, belonging to the institution) -- Ulman, Vladimír (203 Czech Republic, belonging to the institution) -- Svoboda, David (203 Czech Republic, belonging to the institution) -- Nečasová, Tereza (203 Czech Republic, belonging to the institution) -- Morgaenko, Katsiarina (112 Belarus, belonging to the institution) -- Eiselleová, Lívia (703 Slovakia, belonging to the institution) -- Tesařová, Lenka (203 Czech Republic, belonging to the institution) -- Maška, Martin (203 Czech Republic, guarantor, belonging to the institution)
      Keywords in English: simulation;3D time-lapse sequence;synthetic cell;cell deformation;filopodium evolution
      International impact: yes
      Reviewed: yes
      Changed by: RNDr. Pavel Šmerk, Ph.D., učo 3880. Changed: 31/5/2022 17:34.
      More: https://is.muni.cz/publication/1420978/en
    2. How to Exploit Weaknesses in Biomedical Challenge Design and Organization
      REINKE, Annika, Matthias EISENMANN, Sinan ONOGUR, Marko STANKOVIC, Patrick SCHOLZ, Peter M FULL, Hrvoje BOGUNOVIC, Bennett A LANDMAN, Oskar MAIER, Bjoern MENZE, Gregory C SHARP, Korsuk SIRINUKUNWATTANA, Stefanie SPEIDEL, Fons VAN DER SOMMEN, Guoyan ZHENG, Henning MÜLLER, Michal KOZUBEK, Tal ARBEL, Andrew P BRADLEY, Pierre JANNIN, Annette KOPP-SCHNEIDER and Lena MAIER-HEIN. How to Exploit Weaknesses in Biomedical Challenge Design and Organization. In Alejandro F. Frangi, Julia A. Schnabel, Christos Davatzikos, Carlos Alberola-López, Gabor Fichtinger. Medical Image Computing and Computer Assisted Intervention – MICCAI 2018. LNCS 11073. Cham (Switzerland): Springer, 2018, p. 388-395. ISBN 978-3-030-00936-6. Available from: https://dx.doi.org/10.1007/978-3-030-00937-3_45.
      URL
      RIV/00216224:14330/18:00104381 Proceedings paper. English. Switzerland.
      Kozubek, Michal (203 Czech Republic, guarantor, belonging to the institution)
      Keywords in English: biomedical image analysis; benchmarking
      Type of proceedings: pre-proceedings
      International impact: yes
      Reviewed: yes
      Changed by: Mgr. Michal Petr, učo 65024. Changed: 23/4/2020 20:51.
      More: https://is.muni.cz/publication/1464318/en
    3. Model-Based Generation of Synthetic 3D Time-Lapse Sequences of Multiple Mutually Interacting Motile Cells with Filopodia
      PETERLÍK, Igor, David SVOBODA, Vladimír ULMAN, Dmitry SOROKIN and Martin MAŠKA. Model-Based Generation of Synthetic 3D Time-Lapse Sequences of Multiple Mutually Interacting Motile Cells with Filopodia. Online. In Simulation and Synthesis in Medical Imaging. Cham: Springer, 2018, p. 71-79. ISBN 978-3-030-00535-1. Available from: https://dx.doi.org/10.1007/978-3-030-00536-8_8.
      URL
      RIV/00216224:14330/18:00101086 Proceedings paper. English. Germany.
      Peterlík, Igor (703 Slovakia, belonging to the institution) -- Svoboda, David (203 Czech Republic, belonging to the institution) -- Ulman, Vladimír (203 Czech Republic) -- Sorokin, Dmitry (643 Russian Federation) -- Maška, Martin (203 Czech Republic, guarantor, belonging to the institution)
      Keywords in English: Simulation; 3D time-lapse sequence; Cell deformation; Cell interaction; Filopodia
      Type of proceedings: pre-proceedings
      International impact: yes
      Reviewed: yes
      Changed by: doc. RNDr. Martin Maška, Ph.D., učo 60734. Changed: 9/8/2019 13:46.
      More: https://is.muni.cz/publication/1424876/en
    4. Non-rigid Contour-Based Registration of Cell Nuclei in 2-D Live Cell Microscopy Images Using a Dynamic Elasticity Model
      SOROKIN, Dmitry, Igor PETERLÍK, Marco TEKTONIDIS, Karl ROHR and Pavel MATULA. Non-rigid Contour-Based Registration of Cell Nuclei in 2-D Live Cell Microscopy Images Using a Dynamic Elasticity Model. IEEE Transactions on Medical Imaging. IEEE, 2018, vol. 37, No 1, p. 173-184. ISSN 0278-0062. Available from: https://dx.doi.org/10.1109/TMI.2017.2734169.
      URL
      RIV/00216224:14330/18:00100697 Article in a journal. Informatics. English. United States of America.
      Sorokin, Dmitry (643 Russian Federation, belonging to the institution) -- Peterlík, Igor (703 Slovakia, belonging to the institution) -- Tektonidis, Marco (276 Germany) -- Rohr, Karl (276 Germany) -- Matula, Pavel (203 Czech Republic, belonging to the institution)
      Keywords in English: Elasticity; Deformable models; Mathematical model; Microscopy; Dynamics; Image sequences; Image registration; Biomedical image analysis; microscopy; image sequence analysis; registration; elasticity; contour-based registration
      Reviewed: yes
      Changed by: doc. RNDr. Pavel Matula, Ph.D., učo 2927. Changed: 9/2/2022 09:14.
      More: https://is.muni.cz/publication/1367390/en
    5. Replication of ribosomal DNA in Arabidopsis occurs both inside and outside the nucleolus during S phase progression
      DVOŘÁČKOVÁ, Martina, B. RAPOSO, Petr MATULA, J. FUCHS, V. SCHUBERT, Vratislav PEŠKA, B. DESVOYES, C. GUTIERREZ and Jiří FAJKUS. Replication of ribosomal DNA in Arabidopsis occurs both inside and outside the nucleolus during S phase progression. Journal of Cell Science. Cambridge: Company of Biologists Ltd., 2018, vol. 131, No 2, p. nestránkováno, 12 pp. ISSN 0021-9533. Available from: https://dx.doi.org/10.1242/jcs.202416.
      URL
      RIV/00216224:14740/18:00100849 Article in a journal. English. United Kingdom of Great Britain and Northern Ireland.
      Dvořáčková, Martina (203 Czech Republic, belonging to the institution) -- Raposo, B. (724 Spain) -- Matula, Petr (203 Czech Republic, belonging to the institution) -- Fuchs, J. (276 Germany) -- Schubert, V. (276 Germany) -- Peška, Vratislav (203 Czech Republic, belonging to the institution) -- Desvoyes, B. (724 Spain) -- Gutierrez, C. (724 Spain) -- Fajkus, Jiří (203 Czech Republic, guarantor, belonging to the institution)
      Keywords in English: A. thaliana rDNA; Replication; Nucleolus; Flow cytometry; Structured illumination microscopy
      International impact: yes
      Reviewed: yes
      Changed by: Mgr. Pavla Foltynová, Ph.D., učo 106624. Changed: 19/3/2019 09:06.
      More: https://is.muni.cz/publication/1410141/en
    6. Reprogramming of Adult Peripheral Blood Cells into Human Induced Pluripotent Stem Cells as a Safe and Accessible Source of Endothelial Cells.
      ŠIMARA, Pavel, Lenka TESAŘOVÁ, Daniela ŘEHÁKOVÁ, Šimon FARKAŠ, Barbara ŠALINGOVÁ, Kateřina KUTÁLKOVÁ, Eva VAVREČKOVÁ, Pavel MATULA, Petr MATULA, Lenka VEVERKOVÁ and Irena KRONTORÁD KOUTNÁ. Reprogramming of Adult Peripheral Blood Cells into Human Induced Pluripotent Stem Cells as a Safe and Accessible Source of Endothelial Cells. Stem Cells and Development. Mary Ann Liebert, Inc. publishers, 2018, vol. 27, No 1, p. 10-22. ISSN 1547-3287. Available from: https://dx.doi.org/10.1089/scd.2017.0132.
      URL
      Name (in English): Reprogramming of Adult Peripheral Blood Cells into Human Induced Pluripotent Stem Cells as a Safe and Accessible Source of Endothelial Cells.
      RIV/00216224:14330/18:00100772 Article in a journal. Genetics and molecular biology. English. United States of America.
      Šimara, Pavel (203 Czech Republic, belonging to the institution) -- Tesařová, Lenka (203 Czech Republic, belonging to the institution) -- Řeháková, Daniela (203 Czech Republic, belonging to the institution) -- Farkaš, Šimon (703 Slovakia, belonging to the institution) -- Šalingová, Barbara (703 Slovakia, belonging to the institution) -- Kutálková, Kateřina (203 Czech Republic, belonging to the institution) -- Vavrečková, Eva (203 Czech Republic, belonging to the institution) -- Matula, Pavel (203 Czech Republic, belonging to the institution) -- Matula, Petr (203 Czech Republic, belonging to the institution) -- Veverková, Lenka (203 Czech Republic) -- Krontorád Koutná, Irena (203 Czech Republic, guarantor, belonging to the institution)
      Keywords in English: induced pluripotent stem cells; endothelial differentiation; peripheral blood mononuclear cells
      International impact: yes
      Reviewed: yes
      Changed by: RNDr. Pavel Šmerk, Ph.D., učo 3880. Changed: 29/4/2019 16:10.
      More: https://is.muni.cz/publication/1401784/en
    7. Segmentation of Actin-Stained 3D Fluorescent Cells with Filopodial Protrusions using Convolutional Neural Networks
      CASTILLA, Carlos, Martin MAŠKA, Dmitry SOROKIN, Erik MEIJERING and Carlos ORTIZ-DE-SOLORZANO. Segmentation of Actin-Stained 3D Fluorescent Cells with Filopodial Protrusions using Convolutional Neural Networks. Online. In 15th IEEE International Symposium on Biomedical Imaging. Washington: IEEE, 2018, p. 413-417. ISBN 978-1-5386-3636-7. Available from: https://dx.doi.org/10.1109/ISBI.2018.8363605.
      URL
      RIV/00216224:14330/18:00100837 Proceedings paper. English. United States of America.
      Castilla, Carlos (724 Spain) -- Maška, Martin (203 Czech Republic, guarantor, belonging to the institution) -- Sorokin, Dmitry (643 Russian Federation, belonging to the institution) -- Meijering, Erik (528 Netherlands) -- Ortiz-de-Solorzano, Carlos (724 Spain)
      Keywords in English: Cell segmentation; Convolutional Neural Networks; Chan-Vese model; Filopodia
      Type of proceedings: pre-proceedings
      International impact: yes
      Reviewed: yes
      Changed by: RNDr. Pavel Šmerk, Ph.D., učo 3880. Changed: 29/4/2019 14:54.
      More: https://is.muni.cz/publication/1409298/en
    8. Tubular Network Formation Process Using 3D Cellular Potts Model
      SVOBODA, David, Tereza NEČASOVÁ, Lenka TESAŘOVÁ and Pavel ŠIMARA. Tubular Network Formation Process Using 3D Cellular Potts Model. In Gooya A., Goksel O., Oguz I., Burgos N. Simulation and Synthesis in Medical Imaging. LNCS 11037. Neuveden: Springer, 2018, p. 90-99. ISBN 978-3-030-00535-1. Available from: https://dx.doi.org/10.1007/978-3-030-00536-8_10.
      URL
      RIV/00216224:14330/18:00101094 Proceedings paper. English. Germany.
      Svoboda, David (203 Czech Republic, guarantor, belonging to the institution) -- Nečasová, Tereza (203 Czech Republic, belonging to the institution) -- Tesařová, Lenka (203 Czech Republic, belonging to the institution) -- Šimara, Pavel (203 Czech Republic, belonging to the institution)
      Keywords in English: 3D cellular Potts model; Virtual cell; Volumetric image data; Network formation; Fractal dimension; Lacunarity
      Type of proceedings: post-proceedings
      International impact: yes
      Reviewed: yes
      Changed by: RNDr. Pavel Šmerk, Ph.D., učo 3880. Changed: 13/5/2020 19:12.
      More: https://is.muni.cz/publication/1426797/en
    9. Why rankings of biomedical image analysis competitions should be interpreted with care
      MAIER-HEIN, Lena, Matthias EISENMANN, Annika REINKE, Sinan ONOGUR, Marko STANKOVIC, Patrick SCHOLZ, Tal ARBEL, Hrvoje BOGUNOVIC, Andrew BRADLEY, Aaron CARASS, Carolin FELDMANN, Alejandro FRANGI, Peter FULL, Bram VAN GINNEKEN, Allan HANBURY, Katrin HONAUER, Michal KOZUBEK, Bennett LANDMAN, Keno MÄRZ, Oskar MAIER, Klaus MAIER-HEIN, Bjoern MENZE, Henning MÜLLER, Peter NEHER, Wiro NIESSEN, Nasir RAJPOOT, Gregory SHARP, Korsuk SIRINUKUNWATTANA, Stefanie SPEIDEL, Christian STOCK, Danail STOYANOV, Abdel Aziz TAHA, Fons VAN DER SOMMEN, Ching-Wei WANG, Marc-André WEBER, Guoyan ZHENG, Pierre JANNIN and Annette KOPP-SCHNEIDER. Why rankings of biomedical image analysis competitions should be interpreted with care. Nature Communications. Nature Publishing Group, 2018, vol. 9, No 5217, p. 1-13. ISSN 2041-1723. Available from: https://dx.doi.org/10.1038/s41467-018-07619-7.
      URL
      RIV/00216224:14330/18:00101338 Article in a journal. English. Switzerland.
      Kozubek, Michal (203 Czech Republic, guarantor, belonging to the institution)
      Keywords in English: biomedical image analysis; benchmarking; challenge
      International impact: yes
      Reviewed: yes
      Changed by: RNDr. Pavel Šmerk, Ph.D., učo 3880. Changed: 31/12/2018 08:54.
      More: https://is.muni.cz/publication/1466456/en

    2017

    1. An objective comparison of cell-tracking algorithms
      ULMAN, Vladimír, Martin MAŠKA, Klas E G MAGNUSSON, Olaf RONNEBERGER, Carsten HAUBOLD, Nathalie HARDER, Pavel MATULA, Petr MATULA, David SVOBODA, Miroslav RADOJEVIC, Ihor SMAL, Karl ROHR, Joakim JALDÉN, Helen M BLAU, Oleh DZYUBACHYK, Boudewijn LELIEVELDT, Pengdong XIAO, Yuexiang LI, Siu-Yeung CHO, Alexandre C DUFOUR, Jean-Christophe OLIVO-MARIN, Constantino C REYES-ALDASORO, Jose A SOLIS-LEMUS, Robert BENSCH, Thomas BROX, Johannes STEGMAIER, Ralf MIKUT, Steffen WOLF, Fred A HAMPRECHT, Tiago ESTEVES, Pedro QUELHAS, Ömer DEMIREL, Lars MALMSTRÖM, Florian JUG, Pavel TOMANCAK, Erik MEIJERING, Arrate MUÑOZ-BARRUTIA, Michal KOZUBEK and Carlos ORTIZ-DE-SOLORZANO. An objective comparison of cell-tracking algorithms. Nature Methods. Macmillan Publishers Limited, part of Springer Nature, 2017, vol. 14, No 12, p. 1141-1152. ISSN 1548-7091. Available from: https://dx.doi.org/10.1038/nmeth.4473.
      URL
      Name in Czech: Objektivní porovnání algoritmů pro sledování buněk
      Name (in English): An objective comparison of cell-tracking algorithms
      RIV/00216224:14330/17:00095272 Article in a journal. Informatics. English. United States of America.
      Ulman, Vladimír (203 Czech Republic, guarantor, belonging to the institution) -- Maška, Martin (203 Czech Republic, belonging to the institution) -- Magnusson, Klas E G (752 Sweden) -- Ronneberger, Olaf (276 Germany) -- Haubold, Carsten (276 Germany) -- Harder, Nathalie (276 Germany) -- Matula, Pavel (203 Czech Republic, belonging to the institution) -- Matula, Petr (203 Czech Republic, belonging to the institution) -- Svoboda, David (203 Czech Republic, belonging to the institution) -- Radojevic, Miroslav (528 Netherlands) -- Smal, Ihor (528 Netherlands) -- Rohr, Karl (276 Germany) -- Jaldén, Joakim (752 Sweden) -- Blau, Helen M (752 Sweden) -- Dzyubachyk, Oleh (528 Netherlands) -- Lelieveldt, Boudewijn (528 Netherlands) -- Xiao, Pengdong (156 China) -- Li, Yuexiang (156 China) -- Cho, Siu-Yeung (156 China) -- Dufour, Alexandre C (250 France) -- Olivo-Marin, Jean-Christophe (250 France) -- Reyes-Aldasoro, Constantino C (724 Spain) -- Solis-Lemus, Jose A (724 Spain) -- Bensch, Robert (276 Germany) -- Brox, Thomas (276 Germany) -- Stegmaier, Johannes (276 Germany) -- Mikut, Ralf (276 Germany) -- Wolf, Steffen (276 Germany) -- Hamprecht, Fred A (276 Germany) -- Esteves, Tiago (620 Portugal) -- Quelhas, Pedro (620 Portugal) -- Demirel, Ömer (756 Switzerland) -- Malmström, Lars (752 Sweden) -- Jug, Florian (276 Germany) -- Tomancak, Pavel (276 Germany) -- Meijering, Erik (528 Netherlands) -- Muñoz-Barrutia, Arrate (724 Spain) -- Kozubek, Michal (203 Czech Republic, belonging to the institution) -- Ortiz-de-Solorzano, Carlos (724 Spain)
      Keywords in English: Cell migration; Image processing
      International impact: yes
      Reviewed: yes
      Changed by: doc. RNDr. Pavel Matula, Ph.D., učo 2927. Changed: 9/2/2022 09:15.
      More: https://is.muni.cz/publication/1399989/en
    2. Correlation-based 2D Registration Method for Single Particle Cryo-EM Images
      ANOSHINA, Nadezhda A., Andrey S. KRYLOV and Dmitry SOROKIN. Correlation-based 2D Registration Method for Single Particle Cryo-EM Images. Online. In Seventh International Conference on Image Processing Theory, Tools and Applications (IPTA), 2017. Montreal: IEEE, 2017, p. 1-6. ISBN 978-1-5386-1842-4. Available from: https://dx.doi.org/10.1109/IPTA.2017.8310125.
      RIV/00216224:14330/17:00102166 Proceedings paper. English. United States of America.
      Anoshina, Nadezhda A. (643 Russian Federation) -- Krylov, Andrey S. (643 Russian Federation) -- Sorokin, Dmitry (643 Russian Federation, guarantor, belonging to the institution)
      Keywords in English: Image registration; cryo-electron microscopy; cryo-EM particle alignment
      International impact: yes
      Reviewed: yes
      Changed by: RNDr. Pavel Šmerk, Ph.D., učo 3880. Changed: 30/4/2019 06:09.
      More: https://is.muni.cz/publication/1401861/en
    3. DNA double-strand breaks in human induced pluripotent stem cell reprogramming and long-term in vitro culturing
      ŠIMARA, Pavel, Lenka TESAŘOVÁ, Daniela ŘEHÁKOVÁ, Pavel MATULA, Stanislav STEJSKAL, Aleš HAMPL and Irena KRONTORÁD KOUTNÁ. DNA double-strand breaks in human induced pluripotent stem cell reprogramming and long-term in vitro culturing. Stem Cell Research & Therapy. Springer Nature, 2017, vol. 8, No 73, p. 1-13. ISSN 1757-6512. Available from: https://dx.doi.org/10.1186/s13287-017-0522-5.
      URL
      Name (in English): DNA double-strand breaks in human induced pluripotent stem cell reprogramming and long-term in vitro culturing
      RIV/00216224:14330/17:00094705 Article in a journal. Genetics and molecular biology. English. Germany.
      Šimara, Pavel (203 Czech Republic, belonging to the institution) -- Tesařová, Lenka (203 Czech Republic, belonging to the institution) -- Řeháková, Daniela (203 Czech Republic, belonging to the institution) -- Matula, Pavel (203 Czech Republic, belonging to the institution) -- Stejskal, Stanislav (203 Czech Republic, belonging to the institution) -- Hampl, Aleš (203 Czech Republic, belonging to the institution) -- Krontorád Koutná, Irena (203 Czech Republic, guarantor, belonging to the institution)
      Keywords in English: Human induced pluripotent stem cells; DNA double-strand breaks; gammaH2AX; 53BP1; Long-term in vitro culture; DNA repair
      International impact: yes
      Reviewed: yes
      Changed by: doc. RNDr. Pavel Matula, Ph.D., učo 2927. Changed: 9/2/2022 09:16.
      More: https://is.muni.cz/publication/1377715/en
    4. FTutor: An Interactive Guide to the Fundamentals of Frequency Analysis
      SEČKÁŘ, Petr and David SVOBODA. FTutor: An Interactive Guide to the Fundamentals of Frequency Analysis. Computer Applications in Engineering Education. Wiley, 2017, vol. 25, No 3, p. 508-520. ISSN 1061-3773. Available from: https://dx.doi.org/10.1002/cae.21817.
      URL
      RIV/00216224:14330/17:00096147 Article in a journal. Informatics. English. United States of America.
      Sečkář, Petr (203 Czech Republic, belonging to the institution) -- Svoboda, David (203 Czech Republic, guarantor, belonging to the institution)
      Keywords in English: Fourier transform; Computer-assisted education; Portability; Usability
      International impact: yes
      Reviewed: yes
      Changed by: RNDr. Pavel Šmerk, Ph.D., učo 3880. Changed: 31/5/2022 17:33.
      More: https://is.muni.cz/publication/1372324/en
    5. Hematopoietic developmental potential of human pluripotent stem cell lines is accompanied by the morphology of embryoid bodies and the expression of endodermal and hematopoietic markers
      TESAŘOVÁ, Lenka, Pavel ŠIMARA, Stanislav STEJSKAL and Irena KRONTORÁD KOUTNÁ. Hematopoietic developmental potential of human pluripotent stem cell lines is accompanied by the morphology of embryoid bodies and the expression of endodermal and hematopoietic markers. Cellular Reprogramming. 2017, vol. 19, No 4, p. 270-284. ISSN 2152-4971. Available from: https://dx.doi.org/10.1089/cell.2016.0042.
      URL
      RIV/00216224:14330/17:00094855 Article in a journal. Genetics and molecular biology. English. United Kingdom of Great Britain and Northern Ireland.
      Tesařová, Lenka (203 Czech Republic, belonging to the institution) -- Šimara, Pavel (203 Czech Republic, belonging to the institution) -- Stejskal, Stanislav (203 Czech Republic, belonging to the institution) -- Krontorád Koutná, Irena (203 Czech Republic, guarantor, belonging to the institution)
      Keywords in English: pluripotent stem cells; hematopoietic differentiation; embryoid bodies; cytokines; hematopoietic stem cells
      Changed by: Mgr. Tereza Miškechová, učo 341652. Changed: 27/1/2021 11:57.
      More: https://is.muni.cz/publication/1386060/en
    6. Characterization of three-dimensional cancer cell migration in mixed collagen-Matrigel scaffolds using microfluidics and image analysis
      ANGUIANO, María, Carlos CASTILLA, Martin MAŠKA, Cristina EDERRA, Rafael PELÁEZ, Xabier MORALES, Gorka MUÑOZ-ARRIETA, Maite MUJIKA, Michal KOZUBEK, Arrate MUÑOZ-BARRUTIA, Ana ROUZAUT, Sergio ARANA, José Manuel GARCIA-AZNAR and Carlos ORTIZ-DE-SOLORZANO. Characterization of three-dimensional cancer cell migration in mixed collagen-Matrigel scaffolds using microfluidics and image analysis. PLoS ONE. 2017, vol. 12, No 2, p. 1-24. ISSN 1932-6203. Available from: https://dx.doi.org/10.1371/journal.pone.0171417.
      URL
      RIV/00216224:14330/17:00094626 Article in a journal. Use of computers, robotics and its application. English. Hungary.
      Anguiano, María (724 Spain) -- Castilla, Carlos (724 Spain) -- Maška, Martin (203 Czech Republic, guarantor, belonging to the institution) -- Ederra, Cristina (724 Spain) -- Peláez, Rafael (724 Spain) -- Morales, Xabier (724 Spain) -- Muñoz-Arrieta, Gorka (724 Spain) -- Mujika, Maite (724 Spain) -- Kozubek, Michal (203 Czech Republic, belonging to the institution) -- Muñoz-Barrutia, Arrate (724 Spain) -- Rouzaut, Ana (724 Spain) -- Arana, Sergio (724 Spain) -- Garcia-Aznar, José Manuel (724 Spain) -- Ortiz-de-Solorzano, Carlos (724 Spain)
      Keywords in English: cancer; cell migration; basement membrane; cancer invasion; hydrogel; Matrigel; microfluidic devices; cell tracking; mechanobiology
      International impact: yes
      Reviewed: yes
      Changed by: RNDr. Pavel Šmerk, Ph.D., učo 3880. Changed: 14/6/2022 12:28.
      More: https://is.muni.cz/publication/1371657/en
    7. Image-based surrogate biomarkers for molecular subtypes of colorectal cancer
      POPOVICI, Vlad, Eva BUDINSKÁ, Ladislav DUŠEK, Michal KOZUBEK and Fred BOSMAN. Image-based surrogate biomarkers for molecular subtypes of colorectal cancer. Bioinformatics. Oxford: Oxford University Press, 2017, vol. 33, No 13, p. 2002-2009. ISSN 1367-4803. Available from: https://dx.doi.org/10.1093/bioinformatics/btx027.
      Name (in English): Image-based surrogate biomarkers for molecular subtypes of colorectal cancer
      RIV/00216224:14310/17:00097868 Article in a journal. Informatics. English. United Kingdom of Great Britain and Northern Ireland.
      Popovici, Vlad (642 Romania, guarantor, belonging to the institution) -- Budinská, Eva (703 Slovakia, belonging to the institution) -- Dušek, Ladislav (203 Czech Republic, belonging to the institution) -- Kozubek, Michal (203 Czech Republic, belonging to the institution) -- Bosman, Fred (528 Netherlands)
      Keywords in English: digital pathology; bioinformatics; molecular subtypes
      International impact: yes
      Reviewed: yes
      Changed by: Ing. Nicole Zrilić, učo 240776. Changed: 5/4/2018 11:32.
      More: https://is.muni.cz/publication/1392199/en
    8. MitoGen: A Framework for Generating 3D Synthetic Time-Lapse Sequences of Cell Populations in Fluorescence Microscopy
      SVOBODA, David and Vladimír ULMAN. MitoGen: A Framework for Generating 3D Synthetic Time-Lapse Sequences of Cell Populations in Fluorescence Microscopy. IEEE Transactions on Medical Imaging. IEEE Engineering in Medicine and Biology Society, 2017, vol. 36, No 1, p. 310-321. ISSN 0278-0062. Available from: https://dx.doi.org/10.1109/TMI.2016.2606545.
      URL
      RIV/00216224:14330/17:00094555 Article in a journal. Informatics. English. United States of America.
      Svoboda, David (203 Czech Republic, guarantor, belonging to the institution) -- Ulman, Vladimír (203 Czech Republic, belonging to the institution)
      Keywords in English: Simulation; Molecular and cellular imaging; Microscopy; Cell; Image synthesis
      International impact: yes
      Reviewed: yes
      Changed by: RNDr. Pavel Šmerk, Ph.D., učo 3880. Changed: 14/6/2022 11:50.
      More: https://is.muni.cz/publication/1354015/en
    9. Model-Based Generation of Synthetic 3D Time-Lapse Sequences of Motile Cells with Growing Filopodia
      SOROKIN, Dmitry, Igor PETERLÍK, Vladimír ULMAN, David SVOBODA and Martin MAŠKA. Model-Based Generation of Synthetic 3D Time-Lapse Sequences of Motile Cells with Growing Filopodia. Online. In 14th IEEE International Symposium on Biomedical Imaging. Melbourne: IEEE, 2017, p. 822-826. ISBN 978-1-5090-1172-8. Available from: https://dx.doi.org/10.1109/ISBI.2017.7950644.
      URL
      Name (in English): Model-Based Generation of Synthetic 3D Time-Lapse Sequences of Motile Cells with Growing Filopodia
      RIV/00216224:14330/17:00094698 Proceedings paper. Use of computers, robotics and its application. English. United States of America.
      Sorokin, Dmitry (643 Russian Federation, guarantor, belonging to the institution) -- Peterlík, Igor (703 Slovakia, belonging to the institution) -- Ulman, Vladimír (203 Czech Republic, belonging to the institution) -- Svoboda, David (203 Czech Republic, belonging to the institution) -- Maška, Martin (203 Czech Republic, belonging to the institution)
      Keywords in English: Simulation; 3D time-lapse sequence; synthetic cell; cell deformation; filopodium evolution
      Type of proceedings: pre-proceedings
      International impact: yes
      Reviewed: yes
      Changed by: RNDr. Pavel Šmerk, Ph.D., učo 3880. Changed: 27/4/2018 11:10.
      More: https://is.muni.cz/publication/1376851/en
    10. Multimodal Simulations in Live Cell Imaging
      SVOBODA, David and Michal KOZUBEK. Multimodal Simulations in Live Cell Imaging. In Tsaftaris S., Gooya A., Frangi A., Prince J. Simulation and Synthesis in Medical Imaging. LNCS 10557. Neuveden: Springer, 2017, p. 89-98. ISBN 978-3-319-68126-9. Available from: https://dx.doi.org/10.1007/978-3-319-68127-6_10.
      URL
      RIV/00216224:14330/17:00095035 Proceedings paper. Informatics. English. Canada.
      Svoboda, David (203 Czech Republic, guarantor, belonging to the institution) -- Kozubek, Michal (203 Czech Republic, belonging to the institution)
      Keywords in English: Cellular Potts model; Volumetric image data; Multimodal simulation Cell imaging
      Type of proceedings: post-proceedings
      International impact: yes
      Reviewed: yes
      Changed by: RNDr. Pavel Šmerk, Ph.D., učo 3880. Changed: 27/4/2018 10:54.
      More: https://is.muni.cz/publication/1391582/en
    11. Particle Tracking Accuracy Measurement Based on Comparison of Linear Oriented Forests
      MAŠKA, Martin and Pavel MATULA. Particle Tracking Accuracy Measurement Based on Comparison of Linear Oriented Forests. Online. In 16th IEEE International Conference on Computer Vision Workshops. Venice: IEEE, 2017, p. 11-17. ISBN 978-1-5386-1034-3. Available from: https://dx.doi.org/10.1109/ICCVW.2017.8.
      URL
      RIV/00216224:14330/17:00095219 Proceedings paper. Informatics. English. United States of America.
      Maška, Martin (203 Czech Republic, guarantor, belonging to the institution) -- Matula, Pavel (203 Czech Republic, belonging to the institution)
      Keywords in English: particle tracking;linear oriented forest;performance evaluation
      Type of proceedings: pre-proceedings
      International impact: yes
      Reviewed: yes
      Changed by: doc. RNDr. Pavel Matula, Ph.D., učo 2927. Changed: 9/2/2022 09:16.
      More: https://is.muni.cz/publication/1397242/en

    2016

    1. Advanced Image Acquisition and Analytical Techniques for Studies of Living Cells and Tissue Sections
      FRANEK, Michal, Jana SUCHÁNKOVÁ, Petra ŘEZNÍČKOVÁ-PODLOUČKOVÁ, Jana KREJČÍ, Soňa LEGARTOVÁ, Stanislav KOZUBEK, J VEČEŘA, Dmitry SOROKIN and Eva BÁRTOVÁ. Advanced Image Acquisition and Analytical Techniques for Studies of Living Cells and Tissue Sections. Microscopy and Microanalysis. Saarbrücken: Cambridge University Press, 2016, vol. 22, No 2, p. 326-341. ISSN 1431-9276. Available from: https://dx.doi.org/10.1017/S1431927616000052.
      URL
      English.
      Keywords in English: Live-cell studies; microscopy; fluorescent proteins; chromatin; tissue sections
      Changed by: Mgr. Jana Suchánková, Ph.D., učo 323947. Changed: 27/7/2016 15:47.
      More: https://is.muni.cz/publication/1350497/en
    2. Automatic Detection and Segmentation of Exosomes in Transmission Electron Microscopy
      ŠTĚPKA, Karel, Martin MAŠKA, Jakub Jozef PÁLENIK, Vendula POSPÍCHALOVÁ, Anna KOTRBOVÁ, Ladislav ILKOVICS, Dobromila KLEMOVÁ, Aleš HAMPL, Vítězslav BRYJA and Pavel MATULA. Automatic Detection and Segmentation of Exosomes in Transmission Electron Microscopy. In Gang Hua, Hervé Jégou. Computer Vision -- ECCV 2016 Workshops: Amsterdam, The Netherlands, October 8-10 and 15-16, 2016, Proceedings, Part I. Cham, Switzerland: Springer International Publishing, 2016, p. 318-325. ISBN 978-3-319-46603-3. Available from: https://dx.doi.org/10.1007/978-3-319-46604-0_23.
      http://dx.doi.org/10.1007/978-3-319-46604-0_23
      RIV/00216224:14330/16:00091584 Proceedings paper. Informatics. English. Switzerland.
      Štěpka, Karel (203 Czech Republic, belonging to the institution) -- Maška, Martin (203 Czech Republic, belonging to the institution) -- Pálenik, Jakub Jozef (703 Slovakia, belonging to the institution) -- Pospíchalová, Vendula (203 Czech Republic, belonging to the institution) -- Kotrbová, Anna (203 Czech Republic) -- Ilkovics, Ladislav (203 Czech Republic, belonging to the institution) -- Klemová, Dobromila (203 Czech Republic, belonging to the institution) -- Hampl, Aleš (203 Czech Republic, belonging to the institution) -- Bryja, Vítězslav (203 Czech Republic, belonging to the institution) -- Matula, Pavel (203 Czech Republic, belonging to the institution)
      Keywords in English: Exosome; Detection; Segmentation; Transmission electron microscopy; Image processing
      Type of proceedings: post-proceedings
      International impact: yes
      Reviewed: yes
      Changed by: doc. RNDr. Martin Maška, Ph.D., učo 60734. Changed: 7/4/2017 17:57.
      More: https://is.muni.cz/publication/1359762/en
    3. Automatic Detection of Laser-Induced Structures in Live Cell Fluorescent Microscopy Images Using Snakes with Geometric Constraints
      KONDRAT'EV, Alexandr and Dmitry SOROKIN. Automatic Detection of Laser-Induced Structures in Live Cell Fluorescent Microscopy Images Using Snakes with Geometric Constraints. Online. In IEEE 23rd International Conference on Pattern Recognition (ICPR). Not specified: IEEE, 2016, p. 326-331. ISBN 978-1-5090-4846-5. Available from: https://dx.doi.org/10.1109/ICPR.2016.7899655.
      Name (in English): Automatic Detection of Laser-Induced Structures in Live Cell Fluorescent Microscopy Images Using Snakes with Geometric Constraints
      RIV/00216224:14330/16:00088097 Proceedings paper. Use of computers, robotics and its application. English. United States of America.
      Kondrat'ev, Alexandr (643 Russian Federation) -- Sorokin, Dmitry (643 Russian Federation, guarantor, belonging to the institution)
      Keywords in English: Biological image and signal analysis; Biologically motivated vision; Segmentation features and descriptors
      Changed by: RNDr. Pavel Šmerk, Ph.D., učo 3880. Changed: 27/2/2018 09:51.
      More: https://is.muni.cz/publication/1352254/en
    4. DNA double strand breaks detection in pluripotent stem cells with regard to cell cycle stages
      ŠIMARA, Pavel, Irena KRONTORÁD KOUTNÁ, Lenka TESAŘOVÁ, Daniela ŘEHÁKOVÁ and Pavel MATULA. DNA double strand breaks detection in pluripotent stem cells with regard to cell cycle stages. In ISSCR 2016 Annual Meeting. 2016.
      Poster abstract book ISSCR 2016
      Name (in English): DNA double strand breaks detection in pluripotent stem cells with regard to cell cycle stages
      RIV/00216224:14330/16:00088039 Conference abstract. Genetics and molecular biology. English. United States of America.
      Šimara, Pavel (203 Czech Republic, belonging to the institution) -- Krontorád Koutná, Irena (203 Czech Republic, guarantor, belonging to the institution) -- Tesařová, Lenka (203 Czech Republic, belonging to the institution) -- Řeháková, Daniela (203 Czech Republic, belonging to the institution) -- Matula, Pavel (203 Czech Republic, belonging to the institution)
      Keywords in English: hiPSC - reprogramming - genomic stability
      International impact: yes
      Reviewed: yes
      Changed by: Mgr. Pavel Šimara, Ph.D., učo 67594. Changed: 2/3/2018 09:56.
      More: https://is.muni.cz/publication/1350040/en
    5. Challenges and Benchmarks in Bioimage Analysis
      KOZUBEK, Michal. Challenges and Benchmarks in Bioimage Analysis. Online. In DeVos WH, Munck S, Timmermans JP. Focus on Bio-Image Informatics. Berlin: Springer, 2016, p. 231-262. Advances in Anatomy, Embryology and Cell Biology 219. ISBN 978-3-319-28547-4. Available from: https://dx.doi.org/10.1007/978-3-319-28549-8_9.
      URL
      RIV/00216224:14330/16:00087744 Chapter(s) of a specialized book. Informatics. English. Germany.
      Kozubek, Michal (203 Czech Republic, guarantor, belonging to the institution)
      Keywords in English: bioimaging; image analysis; benchmark; challenge
      International impact: yes
      Reviewed: yes
      Changed by: RNDr. Pavel Šmerk, Ph.D., učo 3880. Changed: 27/4/2017 13:24.
      More: https://is.muni.cz/publication/1318626/en
    6. Localized Movement and Levels of 53BP1 Protein Are Changed by gamma-irradiation in PML Deficient Cells
      LEGARTOVÁ, Soňa, Petra ŘEZNÍČKOVÁ-PODLOUČKOVÁ, Barbora MALYŠKOVÁ, Thomas KÜNTZIGER, Philippe COLLAS, Dušan CMARKO, Ivan RAŠKA, Dmitry SOROKIN, Stanislav KOZUBEK and Eva BÁRTOVÁ. Localized Movement and Levels of 53BP1 Protein Are Changed by gamma-irradiation in PML Deficient Cells. Journal of Cellular Biochemistry [IF=2.778 (1990)]. Wiley-Liss, 2016, vol. 117, No 11, p. 2583-2596. ISSN 0730-2312. Available from: https://dx.doi.org/10.1002/jcb.25551.
      Name (in English): Localized Movement and Levels of 53BP1 Protein Are Changed by gamma-irradiation in PML Deficient Cells
      RIV/00216224:14330/16:00087865 Article in a journal. Genetics and molecular biology. English. United States of America.
      Legartová, Soňa (703 Slovakia) -- Řezníčková-Podloučková, Petra (203 Czech Republic) -- Malyšková, Barbora (203 Czech Republic) -- Küntziger, Thomas (578 Norway) -- Collas, Philippe (578 Norway) -- Cmarko, Dušan (203 Czech Republic) -- Raška, Ivan (203 Czech Republic) -- Sorokin, Dmitry (643 Russian Federation, guarantor, belonging to the institution) -- Kozubek, Stanislav (203 Czech Republic) -- Bártová, Eva (203 Czech Republic)
      Keywords in English: DNA REPAIR; 53BP1 PROTEIN; PML BODIES; HISTONE MODIFICATIONS; MICROSCOPY; PHOTOBLEACHING
      Changed by: RNDr. Pavel Šmerk, Ph.D., učo 3880. Changed: 27/4/2017 05:49.
      More: https://is.muni.cz/publication/1340931/en
    7. RNA-dependent disassembly of nuclear bodies
      MUSINOVA, Yana R., Olga M. LISITSYNA, Dmitry SOROKIN, Eugene A. ARIFULIN, Tatiana A. SMIRNOVA, Roman A. ZINOVKIN, Daria M. POTASHNIKOVA, Yegor S. VASSETZKY and Eugene V. SHEVAL. RNA-dependent disassembly of nuclear bodies. Journal of Cell Science. The Company of Biologists Ltd., 2016, vol. 129, No 24, p. 4509-4520. ISSN 0021-9533. Available from: https://dx.doi.org/10.1242/jcs.189142.
      Name (in English): RNA-dependent disassembly of nuclear bodies
      RIV/00216224:14330/16:00087720 Article in a journal. Genetics and molecular biology. English. United Kingdom of Great Britain and Northern Ireland.
      Musinova, Yana R. (643 Russian Federation) -- Lisitsyna, Olga M. (643 Russian Federation) -- Sorokin, Dmitry (643 Russian Federation, guarantor, belonging to the institution) -- Arifulin, Eugene A. (643 Russian Federation) -- Smirnova, Tatiana A. (643 Russian Federation) -- Zinovkin, Roman A. (643 Russian Federation) -- Potashnikova, Daria M. (643 Russian Federation) -- Vassetzky, Yegor S. (643 Russian Federation) -- Sheval, Eugene V. (643 Russian Federation)
      Keywords in English: Nuclear bodies; Nucleolus; Interphase prenucleolar body; pre-rRNA; B23; NPM1; Self-organization
      Changed by: RNDr. Pavel Šmerk, Ph.D., učo 3880. Changed: 27/4/2017 05:41.
      More: https://is.muni.cz/publication/1232676/en
    8. Texture Analysis of 3D Fluorescence Microscopy Images Using RSurf 3D Features
      STOKLASA, Roman and Tomáš MAJTNER. Texture Analysis of 3D Fluorescence Microscopy Images Using RSurf 3D Features. Online. In International Symposium on Biomedical Imaging (ISBI'16). Los Alamitos, California: IEEE Computer Society, 2016, p. 1212-1216. ISBN 978-1-4799-2350-2. Available from: https://dx.doi.org/10.1109/ISBI.2016.7493484.
      RIV/00216224:14330/16:00087753 Proceedings paper. Use of computers, robotics and its application. English. United States of America.
      Stoklasa, Roman (703 Slovakia, guarantor, belonging to the institution) -- Majtner, Tomáš (703 Slovakia, belonging to the institution)
      Keywords in English: RSurf features;HeLa cell images;object recognition;classification;fluorescence microscopy
      Type of proceedings: post-proceedings
      International impact: yes
      Reviewed: yes
      Changed by: RNDr. Pavel Šmerk, Ph.D., učo 3880. Changed: 13/5/2020 19:05.
      More: https://is.muni.cz/publication/1322011/en
    9. The Aberrant DNA Methylation Profile of Human Induced Pluripotent Stem Cells Is Connected to the Reprogramming Process and Is Normalized During In Vitro Culture
      TESAŘOVÁ, Lenka, Pavel ŠIMARA, Stanislav STEJSKAL and Irena KRONTORÁD KOUTNÁ. The Aberrant DNA Methylation Profile of Human Induced Pluripotent Stem Cells Is Connected to the Reprogramming Process and Is Normalized During In Vitro Culture. PLOS ONE. Public Library of Science, 2016, vol. 11, No 6, p. nestránkováno, 16 pp. ISSN 1932-6203. Available from: https://dx.doi.org/10.1371/journal.pone.0157974.
      URL
      RIV/00216224:14330/16:00088006 Article in a journal. Genetics and molecular biology. English. United States of America.
      Tesařová, Lenka (203 Czech Republic, belonging to the institution) -- Šimara, Pavel (203 Czech Republic, belonging to the institution) -- Stejskal, Stanislav (203 Czech Republic, belonging to the institution) -- Krontorád Koutná, Irena (203 Czech Republic, guarantor, belonging to the institution)
      Keywords in English: pluripotent stem cells; DNA methylation; MethylScreen technology; CpG islands; pluripotency and differentiation markers
      International impact: yes
      Reviewed: yes
      Changed by: Mgr. Tereza Miškechová, učo 341652. Changed: 8/2/2021 15:23.
      More: https://is.muni.cz/publication/1348695/en
    10. The role of the endoplasmic reticulum stress in stemness, pluripotency and development
      KRATOCHVÍLOVÁ, Kateřina, Lukáš MORÁŇ, Stanislava PAĎOUROVÁ, Stanislav STEJSKAL, Lenka TESAŘOVÁ, Pavel ŠIMARA, Aleš HAMPL, Irena KRONTORÁD KOUTNÁ and Petr VAŇHARA. The role of the endoplasmic reticulum stress in stemness, pluripotency and development. European Journal of Cell Biology. Jena: Elsevier GMBH, 2016, vol. 95, 3-5, p. 115-123. ISSN 0171-9335. Available from: https://dx.doi.org/10.1016/j.ejcb.2016.02.002.
      URL
      RIV/00216224:14110/16:00088011 Article in a journal. Morphological game parks and cytology. English. Germany.
      Kratochvílová, Kateřina (203 Czech Republic, belonging to the institution) -- Moráň, Lukáš (203 Czech Republic, belonging to the institution) -- Paďourová, Stanislava (703 Slovakia, belonging to the institution) -- Stejskal, Stanislav (203 Czech Republic, belonging to the institution) -- Tesařová, Lenka (203 Czech Republic, belonging to the institution) -- Šimara, Pavel (203 Czech Republic, belonging to the institution) -- Hampl, Aleš (203 Czech Republic, belonging to the institution) -- Krontorád Koutná, Irena (203 Czech Republic, belonging to the institution) -- Vaňhara, Petr (203 Czech Republic, guarantor, belonging to the institution)
      Keywords in English: Endoplasmic reticulum stress; Unfolded protein response; Embryonic stem cells; Pluripotency; Development
      International impact: yes
      Reviewed: yes
      Changed by: Mgr. Tereza Miškechová, učo 341652. Changed: 8/2/2021 14:22.
      More: https://is.muni.cz/publication/1348828/en
    11. Vascular Network Formation in Silico Using the Extended Cellular Potts Model
      SVOBODA, David, Vladimír ULMAN, Peter KOVÁČ, Barbara ŠALINGOVÁ, Lenka TESAŘOVÁ, Irena KRONTORÁD KOUTNÁ and Petr MATULA. Vascular Network Formation in Silico Using the Extended Cellular Potts Model. In 2016 IEEE International Conference on Image Processing. Piscataway, NJ, USA: IEEE Signal Processing Society, 2016, p. 3180-3183. ISBN 978-1-4673-9961-6. Available from: https://dx.doi.org/10.1109/ICIP.2016.7532946.
      URL
      RIV/00216224:14330/16:00087993 Proceedings paper. Informatics. English. United States of America.
      Svoboda, David (203 Czech Republic, guarantor, belonging to the institution) -- Ulman, Vladimír (203 Czech Republic, belonging to the institution) -- Kováč, Peter (703 Slovakia, belonging to the institution) -- Šalingová, Barbara (703 Slovakia, belonging to the institution) -- Tesařová, Lenka (203 Czech Republic, belonging to the institution) -- Krontorád Koutná, Irena (203 Czech Republic, belonging to the institution) -- Matula, Petr (203 Czech Republic, belonging to the institution)
      Keywords in English: Synthetic image formation; Vascular network; Cellular Potts model; Angiogenesis
      Type of proceedings: post-proceedings
      International impact: yes
      Reviewed: yes
      Changed by: doc. RNDr. Petr Matula, Ph.D., učo 3019. Changed: 12/2/2018 14:54.
      More: https://is.muni.cz/publication/1348198/en
    12. Virtual cell imaging: A review on simulation methods employed in image cytometry
      ULMAN, Vladimír, David SVOBODA, Matti NYKTER, Michal KOZUBEK and Pekka RUUSUVUORI. Virtual cell imaging: A review on simulation methods employed in image cytometry. Cytometry Part A. John Wiley & Sons, 2016, 89A, No 12, p. 1057-1072. ISSN 1552-4922. Available from: https://dx.doi.org/10.1002/cyto.a.23031.
      URL
      RIV/00216224:14330/16:00088328 Article in a journal. Use of computers, robotics and its application. English. United States of America.
      Ulman, Vladimír (203 Czech Republic, belonging to the institution) -- Svoboda, David (203 Czech Republic, belonging to the institution) -- Nykter, Matti (246 Finland) -- Kozubek, Michal (203 Czech Republic, guarantor, belonging to the institution) -- Ruusuvuori, Pekka (246 Finland)
      Keywords in English: cell imaging; virtual imaging; simulation; digital cell; cell model; digital phantom; ground truth; validation; image cytometry
      International impact: yes
      Reviewed: yes
      Changed by: prof. RNDr. Michal Kozubek, Ph.D., učo 3740. Changed: 11/10/2021 12:57.
      More: https://is.muni.cz/publication/1360376/en

    2015

    1. Automated Cell Segmentation in Phase-Contrast Images based on Classification and Region Growing
      STOKLASA, Roman, Lukáš BÁLEK, Pavel KREJČÍ and Petr MATULA. Automated Cell Segmentation in Phase-Contrast Images based on Classification and Region Growing. In Proceedings of 2015 IEEE International Symposium on Biomedical Imaging, 2015. Neuveden: Engineering in Medicine and Biology Society, 2015, p. 1447-1451. ISBN 978-1-4799-2374-8. Available from: https://dx.doi.org/10.1109/ISBI.2015.7164149.
      URL
      Name (in English): Automated Cell Segmentation in Phase-Contrast Images based on Classification and Region Growing
      RIV/00216224:14330/15:00082559 Proceedings paper. Use of computers, robotics and its application. English. United States of America.
      Stoklasa, Roman (703 Slovakia, belonging to the institution) -- Bálek, Lukáš (203 Czech Republic, belonging to the institution) -- Krejčí, Pavel (203 Czech Republic, belonging to the institution) -- Matula, Petr (203 Czech Republic, guarantor, belonging to the institution)
      Keywords in English: phase-contrast microscopy; segmentation; classification; superpixel; cells
      Type of proceedings: post-proceedings
      International impact: yes
      Reviewed: yes
      Changed by: Mgr. Marie Šípková, DiS., učo 437722. Changed: 26/6/2020 10:45.
      More: https://is.muni.cz/publication/1230987/en
    2. Cell cycle-dependent changes in H3K56ac in human cells.
      STEJSKAL, Stanislav, Karel ŠTĚPKA, Lenka TESAŘOVÁ, Karel STEJSKAL, Martina MATĚJKOVÁ, Pavel ŠIMARA, Zbyněk ZDRÁHAL and Irena KRONTORÁD KOUTNÁ. Cell cycle-dependent changes in H3K56ac in human cells. Cell Cycle. Philadelphia: Taylor&Francis Inc, 2015, vol. 14, No 24, p. 3851-3863. ISSN 1538-4101. Available from: https://dx.doi.org/10.1080/15384101.2015.1106760.
      Full Text
      RIV/00216224:14330/15:00081398 Article in a journal. Genetics and molecular biology. English. United States of America.
      Stejskal, Stanislav (203 Czech Republic, belonging to the institution) -- Štěpka, Karel (203 Czech Republic, belonging to the institution) -- Tesařová, Lenka (203 Czech Republic, belonging to the institution) -- Stejskal, Karel (203 Czech Republic, belonging to the institution) -- Matějková, Martina (203 Czech Republic, belonging to the institution) -- Šimara, Pavel (203 Czech Republic, belonging to the institution) -- Zdráhal, Zbyněk (203 Czech Republic, belonging to the institution) -- Krontorád Koutná, Irena (203 Czech Republic, guarantor, belonging to the institution)
      Keywords in English: Cell cycle; Chromatin; DNA replication; H3K56ac; Mammalian cells; Nucleosome
      International impact: yes
      Reviewed: yes
      Changed by: Mgr. Marie Šípková, DiS., učo 437722. Changed: 16/12/2019 16:41.
      More: https://is.muni.cz/publication/1322928/en
    3. Cell tracking accuracy measurement based on comparison of acyclic oriented graphs
      MATULA, Pavel, Martin MAŠKA, Dmitry SOROKIN, Petr MATULA, Carlos ORTIZ-DE-SOLÓRZANO and Michal KOZUBEK. Cell tracking accuracy measurement based on comparison of acyclic oriented graphs. PLoS ONE. 2015, vol. 10, No 12, p. "e0144959", 19 pp. ISSN 1932-6203. Available from: https://dx.doi.org/10.1371/journal.pone.0144959.
      URL
      RIV/00216224:14330/15:00080576 Article in a journal. Biophysics. English. United States of America.
      Matula, Pavel (203 Czech Republic, guarantor, belonging to the institution) -- Maška, Martin (203 Czech Republic, belonging to the institution) -- Sorokin, Dmitry (643 Russian Federation, belonging to the institution) -- Matula, Petr (203 Czech Republic, belonging to the institution) -- Ortiz-de-Solórzano, Carlos (724 Spain) -- Kozubek, Michal (203 Czech Republic, belonging to the institution)
      Keywords in English: cell tracking; acyclic graph; measure;
      International impact: yes
      Reviewed: yes
      Changed by: doc. RNDr. Martin Maška, Ph.D., učo 60734. Changed: 13/4/2018 14:53.
      More: https://is.muni.cz/publication/1139063/en
    4. GPU Implementation of Linear Morphological Openings with Arbitrary Angle
      KARAS, Pavel, Vincent MORARD, Jan BARTOVSKÝ, Thierry GRANDPIERRE, Eva DOKLÁDALOVÁ, Petr MATULA and Petr DOKLÁDAL. GPU Implementation of Linear Morphological Openings with Arbitrary Angle. Journal of Real-Time Image Processing. Springer-Verlag, 2015, vol. 10, No 1, p. 27-41. ISSN 1861-8200. Available from: https://dx.doi.org/10.1007/s11554-012-0248-7.
      URL
      Name in Czech: Implementace lineárních, libovolně orientovaných morfologických otevření na GPU
      RIV/00216224:14330/15:00080555 Article in a journal. Informatics. English. Germany.
      Karas, Pavel (203 Czech Republic, guarantor, belonging to the institution) -- Morard, Vincent (250 France) -- Bartovský, Jan (203 Czech Republic) -- Grandpierre, Thierry (250 France) -- Dokládalová, Eva (250 France) -- Matula, Petr (203 Czech Republic) -- Dokládal, Petr (250 France)
      Keywords in English: gpu; morphology; opening; closing; linear; real-time
      International impact: yes
      Reviewed: yes
      Changed by: RNDr. Pavel Šmerk, Ph.D., učo 3880. Changed: 7/1/2019 14:02.
      More: https://is.muni.cz/publication/964786/en
    5. Characterization of the Role of Collagen Network Structure and Composition in Cancer Cell Migration
      ANGUIANO, María, Carlos CASTILLA, Martin MAŠKA, Cristina EDERRA, Javier FERNÁNDEZ-MARQUÉS, Rafael PELÁEZ, Ana ROUZAUT, Arrate MUÑOZ-BARRUTIA, Michal KOZUBEK and Carlos ORTIZ-DE-SOLÓRZANO. Characterization of the Role of Collagen Network Structure and Composition in Cancer Cell Migration. Online. In 37th Annual International Conference of the IEEE Engineering in Medicine and Biology Society. Milano: IEEE, 2015, p. 8139-8142. ISBN 978-1-4244-9271-8. Available from: https://dx.doi.org/10.1109/EMBC.2015.7320283.
      URL
      RIV/00216224:14330/15:00080823 Proceedings paper. Informatics. English. United States of America.
      Anguiano, María (724 Spain) -- Castilla, Carlos (724 Spain) -- Maška, Martin (203 Czech Republic, guarantor, belonging to the institution) -- Ederra, Cristina (724 Spain) -- Fernández-Marqués, Javier (724 Spain) -- Peláez, Rafael (724 Spain) -- Rouzaut, Ana (724 Spain) -- Muñoz-Barrutia, Arrate (724 Spain) -- Kozubek, Michal (203 Czech Republic, belonging to the institution) -- Ortiz-de-Solórzano, Carlos (724 Spain)
      Keywords in English: collagen network geometry; confocal reflection microscopy; Matrigel; steerable filtering; pore size; cell migration
      Type of proceedings: post-proceedings
      International impact: yes
      Reviewed: yes
      Changed by: RNDr. Pavel Šmerk, Ph.D., učo 3880. Changed: 28/4/2016 14:15.
      More: https://is.muni.cz/publication/1300413/en
    6. Localized movement and morphology of UBF1-positive nucleolar regions are changed by gamma-irradiation in G2 phase of the cell cycle
      SOROKIN, Dmitry, Lenka STIXOVÁ, Petra SEHNALOVÁ, Soňa LEGARTOVÁ, Jana SUCHÁNKOVÁ, Pavel ŠIMARA, Stanislav KOZUBEK, Pavel MATULA, Magdalena SKALNÍKOVÁ, Ivan RAŠKA and Eva BÁRTOVÁ. Localized movement and morphology of UBF1-positive nucleolar regions are changed by gamma-irradiation in G2 phase of the cell cycle. Nucleus. 2015, vol. 6, No 4, p. 301-313. ISSN 1949-1034. Available from: https://dx.doi.org/10.1080/19491034.2015.1075111.
      Name (in English): Localized movement and morphology of UBF1-positive nucleolar regions are changed by gamma-irradiation in G2 phase of the cell cycle
      RIV/00216224:14330/15:00080738 Article in a journal. Genetics and molecular biology. English. United Kingdom of Great Britain and Northern Ireland.
      Sorokin, Dmitry (643 Russian Federation, guarantor, belonging to the institution) -- Stixová, Lenka (203 Czech Republic) -- Sehnalová, Petra (203 Czech Republic) -- Legartová, Soňa (703 Slovakia) -- Suchánková, Jana (203 Czech Republic) -- Šimara, Pavel (203 Czech Republic, belonging to the institution) -- Kozubek, Stanislav (203 Czech Republic) -- Matula, Pavel (203 Czech Republic, belonging to the institution) -- Skalníková, Magdalena (203 Czech Republic) -- Raška, Ivan (203 Czech Republic) -- Bártová, Eva (203 Czech Republic)
      Keywords in English: DNA damage; live cells; nucleolus; uncleoli tracking; UBF1
      Changed by: RNDr. Pavel Šmerk, Ph.D., učo 3880. Changed: 28/4/2016 13:56.
      More: https://is.muni.cz/publication/1232675/en
    7. Next Step Toward the Automation of Screening for Cervical Cancer
      SVOBODA, David. Next Step Toward the Automation of Screening for Cervical Cancer. Cytometry Part A. John Wiley & Sons, 2015, 87a, No 3, p. 195-196. ISSN 1552-4922. Available from: https://dx.doi.org/10.1002/cyto.a.22564.
      URL
      Use of computers, robotics and its application. English. United States of America.
      Keywords in English: bright-field optical microscopy; simulations; Pap-smear specimen; benchmark datasets
      International impact: yes
      Changed by: RNDr. Pavel Šmerk, Ph.D., učo 3880. Changed: 29/4/2016 06:13.
      More: https://is.muni.cz/publication/1228858/en
    8. On Proper Simulation of Chromatin Structure in Static Images As Well As in Time-Lapse Sequences in Fluorescence Microscopy
      SVOBODA, David, Vladimír ULMAN and Igor PETERLÍK. On Proper Simulation of Chromatin Structure in Static Images As Well As in Time-Lapse Sequences in Fluorescence Microscopy. In Proceedings of 2015 IEEE International Symposium on Biomedical Imaging. Stoughton (WI, USA): Engineering in Medicine and Biology Society, 2015, p. 712-716. ISBN 978-1-4799-2374-8. Available from: https://dx.doi.org/10.1109/ISBI.2015.7163972.
      RIV/00216224:14330/15:00080650 Proceedings paper. Informatics. English. United States of America.
      Svoboda, David (203 Czech Republic, guarantor, belonging to the institution) -- Ulman, Vladimír (203 Czech Republic, belonging to the institution) -- Peterlík, Igor (703 Slovakia, belonging to the institution)
      Keywords in English: Simulation; Synthetic cell; Chromatin structure; Nucleus deformation; Linear elasticity; FEM
      Type of proceedings: post-proceedings
      International impact: yes
      Reviewed: yes
      Changed by: doc. RNDr. David Svoboda, Ph.D., učo 2824. Changed: 16/7/2019 11:11.
      More: https://is.muni.cz/publication/1218636/en
    9. Performance and Sensitivity Evaluation of 3-D Spot Detection Methods in Confocal Microscopy
      ŠTĚPKA, Karel, Pavel MATULA, Petr MATULA, Stefan WOERZ, Karl ROHR and Michal KOZUBEK. Performance and Sensitivity Evaluation of 3-D Spot Detection Methods in Confocal Microscopy. Cytometry Part A. John Wiley & Sons, 2015, 87A, No 8, p. 759-772. ISSN 1552-4922. Available from: https://dx.doi.org/10.1002/cyto.a.22692.
      URL
      RIV/00216224:14330/15:00080577 Article in a journal. Informatics. English. United States of America.
      Štěpka, Karel (203 Czech Republic, guarantor, belonging to the institution) -- Matula, Pavel (203 Czech Republic, belonging to the institution) -- Matula, Petr (203 Czech Republic, belonging to the institution) -- Woerz, Stefan (276 Germany) -- Rohr, Karl (276 Germany) -- Kozubek, Michal (203 Czech Republic, belonging to the institution)
      Keywords in English: fluorescence microscopy; 3D imaging; diffraction-limited spot detection; parameter sensitivity
      International impact: yes
      Reviewed: yes
      Changed by: doc. RNDr. Pavel Matula, Ph.D., učo 2927. Changed: 9/2/2022 09:19.
      More: https://is.muni.cz/publication/1139067/en
    10. Quantification of the 3D Collagen Network Geometry in Confocal Reflection Microscopy
      MAŠKA, Martin, Cristina EDERRA, Javier FERNÁNDEZ-MARQUÉS, Arrate MUÑOZ-BARRUTIA, Michal KOZUBEK and Carlos ORTIZ-DE-SOLÓRZANO. Quantification of the 3D Collagen Network Geometry in Confocal Reflection Microscopy. Online. In 22nd IEEE International Conference on Image Processing. Québec City: IEEE, 2015, p. 1791-1794. ISBN 978-1-4799-8339-1. Available from: https://dx.doi.org/10.1109/ICIP.2015.7351109.
      URL
      RIV/00216224:14330/15:00080822 Proceedings paper. Informatics. English. United States of America.
      Maška, Martin (203 Czech Republic, guarantor, belonging to the institution) -- Ederra, Cristina (724 Spain) -- Fernández-Marqués, Javier (724 Spain) -- Muñoz-Barrutia, Arrate (724 Spain) -- Kozubek, Michal (203 Czech Republic, belonging to the institution) -- Ortiz-de-Solórzano, Carlos (724 Spain)
      Keywords in English: collagen network geometry;confocal reflection microscopy;Matrigel;steerable filtering;pore size
      Type of proceedings: post-proceedings
      International impact: yes
      Reviewed: yes
      Changed by: doc. RNDr. Martin Maška, Ph.D., učo 60734. Changed: 26/5/2016 00:26.
      More: https://is.muni.cz/publication/1300411/en
    11. The effect of reprogramming method, source cell type and long-term cell culture on genomic stability of human induced pluripotent stem cells
      ŠIMARA, Pavel, Irena KRONTORÁD KOUTNÁ, Stanislav STEJSKAL and Lenka TESAŘOVÁ. The effect of reprogramming method, source cell type and long-term cell culture on genomic stability of human induced pluripotent stem cells. In ISSCR 2015 Annual Meeting. 2015.
      Poster abstract book ISSCR 2015
      Name (in English): The effect of reprogramming method, source cell type and long-term cell culture on genomic stability of human induced pluripotent stem cells
      RIV/00216224:14330/15:00080889 Conference abstract. Genetics and molecular biology. English. Sweden.
      Šimara, Pavel (203 Czech Republic, belonging to the institution) -- Krontorád Koutná, Irena (203 Czech Republic, guarantor, belonging to the institution) -- Stejskal, Stanislav (203 Czech Republic, belonging to the institution) -- Tesařová, Lenka (203 Czech Republic, belonging to the institution)
      Keywords in English: hiPSC - reprogramming - genomic stability
      Changed by: Mgr. Pavel Šimara, Ph.D., učo 67594. Changed: 2/3/2018 10:00.
      More: https://is.muni.cz/publication/1305881/en
    12. Toward a Morphodynamic Model of the Cell
      ORTIZ-DE-SOLÓRZANO, Carlos, Arrate MUÑOZ-BARRUTIA, Erik MEIJERING and Michal KOZUBEK. Toward a Morphodynamic Model of the Cell. IEEE Signal Processing Magazine. New York: IEEE, 2015, vol. 32, No 1, p. 20-29. ISSN 1053-5888. Available from: https://dx.doi.org/10.1109/MSP.2014.2358263.
      Name in Czech: Na cestě k morfo-dynamickému modelu buňky
      RIV/00216224:14330/15:00080606 Article in a journal. Biophysics. English. United States of America.
      Ortiz-de-Solórzano, Carlos (724 Spain) -- Muñoz-Barrutia, Arrate (724 Spain) -- Meijering, Erik (528 Netherlands) -- Kozubek, Michal (203 Czech Republic, guarantor, belonging to the institution)
      Keywords in English: cell model; image segmentation; cell tracking; cell synthesis
      International impact: yes
      Reviewed: yes
      Changed by: RNDr. Pavel Šmerk, Ph.D., učo 3880. Changed: 29/4/2016 06:59.
      More: https://is.muni.cz/publication/1204565/en
    13. TRAgen: A Tool for Generation of Synthetic Time-Lapse Image Sequences of Living Cells
      ULMAN, Vladimír, Zoltán ORÉMUŠ and David SVOBODA. TRAgen: A Tool for Generation of Synthetic Time-Lapse Image Sequences of Living Cells. In Vittorio Murino, Enrico Puppo, Gianni Vernazza. Proceedings of 18th International Conference on Image Analysis and Processing. Heidelberg, Německo: Springer International Publishing, 2015, p. 623-634. ISBN 978-3-319-23230-0. Available from: https://dx.doi.org/10.1007/978-3-319-23231-7_56.
      Name in Czech: TRAgen: nástroj pro generování syntetických časosběrných obrazových sekvencí živých buněk
      RIV/00216224:14330/15:00080843 Proceedings paper. Informatics. English. Germany.
      Ulman, Vladimír (203 Czech Republic, guarantor, belonging to the institution) -- Orémuš, Zoltán (703 Slovakia, belonging to the institution) -- Svoboda, David (203 Czech Republic, belonging to the institution)
      Keywords in English: Biomedical images; Simulations; Evaluation; Cell Tracking
      Type of proceedings: post-proceedings
      International impact: yes
      Reviewed: yes
      Changed by: RNDr. Vladimír Ulman, Ph.D., učo 4203. Changed: 7/4/2017 16:56.
      More: https://is.muni.cz/publication/1300779/en
    14. 2D/3D Gabor Features and 2D/3D MPEG-7 EHD Features (software)
      MAJTNER, Tomáš and David SVOBODA. 2D/3D Gabor Features and 2D/3D MPEG-7 EHD Features. 2015.
      http://cbia.fi.muni.cz/projects/2d/3d-gabor--2d/3d-mpeg-7-ehd-features.html
      RIV/00216224:14330/15:00081208 Software. Computer hardware and software. English. Czech Republic.
      Majtner, Tomáš (703 Slovakia, belonging to the institution) -- Svoboda, David (203 Czech Republic, guarantor, belonging to the institution)
      Keywords in English: image descriptor; Pattern recognition; Gabor features; MPEG-7 Edge Histogram Descriptor;
      International impact: yes
      Changed by: RNDr. Ing. Bc. Tomáš Majtner, Ph.D., učo 172786. Changed: 19/11/2015 11:08.
      More: https://is.muni.cz/publication/1317735/en

    2014

    1. A Benchmark for Comparison of Cell Tracking Algorithms
      MAŠKA, Martin, Vladimír ULMAN, David SVOBODA, Pavel MATULA, Petr MATULA, Cristina EDERRA, Ainhoa URBIOLA, Tomás ESPAÑA, Subramanian VENKATESAN, Deepak M W BALAK, Pavel KARAS, Tereza BOLCKOVÁ, Markéta ŠTREITOVÁ, Craig CARTHEL, Stefano CORALUPPI, Nathalie HARDER, Karl ROHR, Klas E G MAGNUSSON, Joakim JALDÉN, Helen M BLAU, Oleh DZYUBACHYK, Pavel KŘÍŽEK, Guy M HAGEN, David PASTOR-ESCUREDO, Daniel JIMENEZ-CARRETERO, Maria J LEDESMA-CARBAYO, Arrate MUÑOZ-BARRUTIA, Erik MEIJERING, Michal KOZUBEK and Carlos ORTIZ-DE-SOLORZANO. A Benchmark for Comparison of Cell Tracking Algorithms. Bioinformatics. 2014, vol. 30, No 11, p. 1609-1617. ISSN 1367-4803. Available from: https://dx.doi.org/10.1093/bioinformatics/btu080.
      URL
      RIV/00216224:14330/14:00073448 Article in a journal. Informatics. English. United Kingdom of Great Britain and Northern Ireland.
      Maška, Martin (203 Czech Republic, guarantor, belonging to the institution) -- Ulman, Vladimír (203 Czech Republic, belonging to the institution) -- Svoboda, David (203 Czech Republic, belonging to the institution) -- Matula, Pavel (203 Czech Republic, belonging to the institution) -- Matula, Petr (203 Czech Republic, belonging to the institution) -- Ederra, Cristina (724 Spain) -- Urbiola, Ainhoa (724 Spain) -- España, Tomás (724 Spain) -- Venkatesan, Subramanian (356 India) -- Balak, Deepak M W (356 India) -- Karas, Pavel (203 Czech Republic, belonging to the institution) -- Bolcková, Tereza (203 Czech Republic, belonging to the institution) -- Štreitová, Markéta (203 Czech Republic, belonging to the institution) -- Carthel, Craig (840 United States of America) -- Coraluppi, Stefano (840 United States of America) -- Harder, Nathalie (276 Germany) -- Rohr, Karl (276 Germany) -- Magnusson, Klas E G (752 Sweden) -- Jaldén, Joakim (752 Sweden) -- Blau, Helen M (826 United Kingdom of Great Britain and Northern Ireland) -- Dzyubachyk, Oleh (804 Ukraine) -- Křížek, Pavel (203 Czech Republic) -- Hagen, Guy M (528 Netherlands) -- Pastor-Escuredo, David (724 Spain) -- Jimenez-Carretero, Daniel (724 Spain) -- Ledesma-Carbayo, Maria J (724 Spain) -- Muñoz-Barrutia, Arrate (724 Spain) -- Meijering, Erik (528 Netherlands) -- Kozubek, Michal (203 Czech Republic, belonging to the institution) -- Ortiz-de-Solorzano, Carlos (724 Spain)
      Keywords in English: cell tracking; fluorescence microscopy
      International impact: yes
      Reviewed: yes
      Changed by: doc. RNDr. Martin Maška, Ph.D., učo 60734. Changed: 13/4/2018 14:54.
      More: https://is.muni.cz/publication/1139064/en
    2. A performance evaluation of statistical tests for edge detection in textured images
      WILLIAMS, Ian, Nicholas BOWRING and David SVOBODA. A performance evaluation of statistical tests for edge detection in textured images. Computer Vision and Image Understanding. Elsevier, 2014, vol. 122, May 2014, p. 115-130. ISSN 1077-3142. Available from: https://dx.doi.org/10.1016/j.cviu.2014.02.009.
      RIV/00216224:14330/14:00075212 Article in a journal. Use of computers, robotics and its application. English. Netherlands.
      Williams, Ian (826 United Kingdom of Great Britain and Northern Ireland) -- Bowring, Nicholas (826 United Kingdom of Great Britain and Northern Ireland) -- Svoboda, David (203 Czech Republic, guarantor, belonging to the institution)
      Keywords in English: Edge detection; Statistical tests; Textured images; Histological images; Performance measures
      International impact: yes
      Reviewed: yes
      Changed by: RNDr. Pavel Šmerk, Ph.D., učo 3880. Changed: 27/4/2015 03:20.
      More: https://is.muni.cz/publication/1173216/en
    3. An induced pluripotent stem cell model of hypoplastic left heart syndrome (HLHS) reveals multiple expression and functional differences in HLHS derived cardiac myocytes
      JIANG, Yan, Saba HABIBOLLAH, Katarzyna TILGNER, Joseph COLLIN, Tomáš BÁRTA, Jumana Yousuf AL-AAMA, Lenka TESAŘOVÁ, Rafiqul HUSSAIN, Andrew TRAFFORD, Graham KIRKWOOD, Evelyne SERNAGOR, Cyril ELEFTHERIOU, Stefan PRZYBORSKI, Miodrag STOJKOVIC, Majlinda LAKO, Bernard KEAVNEY and Lyle ARMSTRONG. An induced pluripotent stem cell model of hypoplastic left heart syndrome (HLHS) reveals multiple expression and functional differences in HLHS derived cardiac myocytes. Stem cells translational medicine. 2014, vol. 3, No 4, p. 416-423. ISSN 2157-6564. Available from: https://dx.doi.org/10.5966/sctm.2013-0105.
      RIV/00216224:14330/14:00074816 Article in a journal. Genetics and molecular biology. English. United States of America.
      Jiang, Yan (826 United Kingdom of Great Britain and Northern Ireland) -- Habibollah, Saba (826 United Kingdom of Great Britain and Northern Ireland) -- Tilgner, Katarzyna (826 United Kingdom of Great Britain and Northern Ireland) -- Collin, Joseph (826 United Kingdom of Great Britain and Northern Ireland) -- Bárta, Tomáš (203 Czech Republic) -- Al-Aama, Jumana Yousuf (826 United Kingdom of Great Britain and Northern Ireland) -- Tesařová, Lenka (203 Czech Republic, guarantor, belonging to the institution) -- Hussain, Rafiqul (826 United Kingdom of Great Britain and Northern Ireland) -- Trafford, Andrew (826 United Kingdom of Great Britain and Northern Ireland) -- Kirkwood, Graham (826 United Kingdom of Great Britain and Northern Ireland) -- Sernagor, Evelyne (826 United Kingdom of Great Britain and Northern Ireland) -- Eleftheriou, Cyril (826 United Kingdom of Great Britain and Northern Ireland) -- Przyborski, Stefan (826 United Kingdom of Great Britain and Northern Ireland) -- Stojkovic, Miodrag (826 United Kingdom of Great Britain and Northern Ireland) -- Lako, Majlinda (826 United Kingdom of Great Britain and Northern Ireland) -- Keavney, Bernard (826 United Kingdom of Great Britain and Northern Ireland) -- Armstrong, Lyle (826 United Kingdom of Great Britain and Northern Ireland)
      Keywords in English: Hypoplastic left heart syndrome; induced pluripotent stem cells; cardiac myocytes; cardiac development; pluripotent stem cell differentiation
      Changed by: Mgr. Lenka Tesařová, Ph.D., učo 78340. Changed: 2/3/2018 10:08.
      More: https://is.muni.cz/publication/1129955/en
    4. Coilin is rapidly recruited to UVA-induced DNA lesions and gamma-radiation affects localized movement of Cajal bodies
      BÁRTOVÁ, Eva, Veronika FOLTÁNKOVÁ, Soňa LEGARTOVÁ, Petra SEHNALOVÁ, Dmitry SOROKIN, Jana SUCHÁNKOVÁ and Stanislav KOZUBEK. Coilin is rapidly recruited to UVA-induced DNA lesions and gamma-radiation affects localized movement of Cajal bodies. Nucleus. Landes Bioscience, 2014, vol. 5, No 3, p. 269-277. ISSN 1949-1034. Available from: https://dx.doi.org/10.4161/nucl.29229.
      RIV/00216224:14330/14:00073626 Article in a journal. Genetics and molecular biology. English. United States of America.
      Bártová, Eva (203 Czech Republic) -- Foltánková, Veronika (203 Czech Republic) -- Legartová, Soňa (703 Slovakia) -- Sehnalová, Petra (203 Czech Republic) -- Sorokin, Dmitry (643 Russian Federation, guarantor, belonging to the institution) -- Suchánková, Jana (203 Czech Republic) -- Kozubek, Stanislav (203 Czech Republic)
      Keywords in English: DNA repair; chromatin; nucleus; nucleolus; Cajal bodies; coilin
      Changed by: RNDr. Pavel Šmerk, Ph.D., učo 3880. Changed: 27/4/2015 03:55.
      More: https://is.muni.cz/publication/1182653/en
    5. Comparison of 3D Texture-based Image Descriptors in Fluorescence Microscopy
      MAJTNER, Tomáš and David SVOBODA. Comparison of 3D Texture-based Image Descriptors in Fluorescence Microscopy. In Reneta P. Barneva, Valentin E. Brimkov, Josef Šlapal. 16th International Workshop on Combinatorial Image Analysis (IWCIA) 2014. Switzerland: Springer International Publishing, 2014, p. 186-195. ISBN 978-3-319-07147-3. Available from: https://dx.doi.org/10.1007/978-3-319-07148-0_17.
      URL
      RIV/00216224:14330/14:00073552 Proceedings paper. Use of computers, robotics and its application. English. Switzerland.
      Majtner, Tomáš (703 Slovakia, guarantor, belonging to the institution) -- Svoboda, David (203 Czech Republic, belonging to the institution)
      Keywords in English: 3D images; Texture descriptors; Fluorescence microscopy; Local Binary Patterns
      Type of proceedings: post-proceedings
      International impact: yes
      Reviewed: yes
      Changed by: RNDr. Ing. Bc. Tomáš Majtner, Ph.D., učo 172786. Changed: 9/1/2015 15:37.
      More: https://is.muni.cz/publication/1173483/en
    6. Driven hematopoietic differentiation of embryonic stem cells: Epigenetic perspectives
      TESAŘOVÁ, Lenka, Stanislav STEJSKAL and Irena KRONTORÁD KOUTNÁ. Driven hematopoietic differentiation of embryonic stem cells: Epigenetic perspectives. CURRENT PHARMACEUTICAL DESIGN. SHARJAH: BENTHAM SCIENCE PUBL LTD, 2014, vol. 20, No 11, p. 1674-1686. ISSN 1381-6128. Available from: https://dx.doi.org/10.2174/13816128113199990524.
      RIV/00216224:14330/14:00073400 Article in a journal. Genetics and molecular biology. English. United Arab Emirates.
      Tesařová, Lenka (203 Czech Republic, belonging to the institution) -- Stejskal, Stanislav (203 Czech Republic, belonging to the institution) -- Krontorád Koutná, Irena (203 Czech Republic, guarantor, belonging to the institution)
      Keywords in English: epigenetic; stem cells; pluripotency; cell differentiation; hematopoietic development
      Changed by: Mgr. Lenka Tesařová, Ph.D., učo 78340. Changed: 2/3/2018 10:11.
      More: https://is.muni.cz/publication/1095798/en
    7. Efficient k-NN based HEp-2 cells classifier
      STOKLASA, Roman, Tomáš MAJTNER and David SVOBODA. Efficient k-NN based HEp-2 cells classifier. PATTERN RECOGNITION. OXFORD: PERGAMON-ELSEVIER SCIENCE LTD, 2014, vol. 47, No 7, p. 2409-2418. ISSN 0031-3203. Available from: https://dx.doi.org/10.1016/j.patcog.2013.09.021.
      URL
      RIV/00216224:14330/14:00073423 Article in a journal. Informatics. English. United Kingdom of Great Britain and Northern Ireland.
      Stoklasa, Roman (703 Slovakia, guarantor, belonging to the institution) -- Majtner, Tomáš (703 Slovakia, belonging to the institution) -- Svoboda, David (203 Czech Republic, belonging to the institution)
      Keywords in English: HEp-2 cells; Classifier; Image descriptor; Classification; Nearest neighbours; IIF; Indirect Immunofluorescence
      International impact: yes
      Reviewed: yes
      Changed by: RNDr. Pavel Šmerk, Ph.D., učo 3880. Changed: 27/4/2015 21:41.
      More: https://is.muni.cz/publication/1129437/en
    8. From Endothelial Progenitor Cells to Tissue Engineering: How Far Have We Come?
      ŠALINGOVÁ, Barbara, Martina MADARÁSOVÁ, Stanislav STEJSKAL, Lenka TESAŘOVÁ, Pavel ŠIMARA and Irena KRONTORÁD KOUTNÁ. From Endothelial Progenitor Cells to Tissue Engineering: How Far Have We Come? Journal of Stem Cell Research & Therapy. 5716 Corsa Ave, Los Angeles, USA: OMICS group, 2014, vol. 4, No 3, p. 185-195. ISSN 2157-7633. Available from: https://dx.doi.org/10.4172/2157-7633.1000185.
      Journal of Stem Cell Research and Therapy
      Name in Czech: Od endoteliálních progenitorových buněk po tkáňové inženýrství: Jak daleko jsme došli
      Name (in English): From Endothelial Progenitor Cells to Tissue Engineering: How Far Have We Come?
      RIV/00216224:14330/14:00073592 Article in a journal. Genetics and molecular biology. English. United States of America.
      Šalingová, Barbara (703 Slovakia, belonging to the institution) -- Madarásová, Martina (703 Slovakia, belonging to the institution) -- Stejskal, Stanislav (203 Czech Republic, belonging to the institution) -- Tesařová, Lenka (203 Czech Republic, belonging to the institution) -- Šimara, Pavel (203 Czech Republic, belonging to the institution) -- Krontorád Koutná, Irena (203 Czech Republic, guarantor, belonging to the institution)
      Keywords in English: EPC; In vitro vascularization; Small-diameter vessels
      Changed by: Mgr. Pavel Šimara, Ph.D., učo 67594. Changed: 2/3/2018 10:02.
      More: https://is.muni.cz/publication/1180362/en
    9. Generation of Human Induced Pluripotent Stem Cells Using Genome Integrating or Non-integrating Methods
      ŠIMARA, Pavel, Lenka TESAŘOVÁ, Stanislava PAĎOUROVÁ and Irena KRONTORÁD KOUTNÁ. Generation of Human Induced Pluripotent Stem Cells Using Genome Integrating or Non-integrating Methods. Folia Biologica. Praha: Univerzita Karlova, 2014, vol. 60, S1, p. 85-89. ISSN 0015-5500.
      RIV/00216224:14330/14:00074034 Article in a journal. Genetics and molecular biology. English. Czech Republic.
      Šimara, Pavel (203 Czech Republic, belonging to the institution) -- Tesařová, Lenka (203 Czech Republic, belonging to the institution) -- Paďourová, Stanislava (703 Slovakia, belonging to the institution) -- Krontorád Koutná, Irena (203 Czech Republic, guarantor, belonging to the institution)
      Keywords in English: hiPSCs; lentivirus; Sendai virus; episomal reprogramming
      Changed by: Mgr. Pavel Šimara, Ph.D., učo 67594. Changed: 2/3/2018 10:06.
      More: https://is.muni.cz/publication/1204941/en
    10. Haematopoietic developmental potential of human pluripotent stem cell lines
      TESAŘOVÁ, Lenka, Pavel ŠIMARA, Stanislav STEJSKAL and Irena KRONTORÁD KOUTNÁ. Haematopoietic developmental potential of human pluripotent stem cell lines. Folia biologica. Praha: Univerzita Karlova, 2014, vol. 60, No 1, p. 90-94. ISSN 0015-5500.
      RIV/00216224:14330/14:00073970 Article in a journal. Genetics and molecular biology. English. Czech Republic.
      Tesařová, Lenka (203 Czech Republic, belonging to the institution) -- Šimara, Pavel (203 Czech Republic, belonging to the institution) -- Stejskal, Stanislav (203 Czech Republic, belonging to the institution) -- Krontorád Koutná, Irena (203 Czech Republic, guarantor, belonging to the institution)
      Keywords in English: human pluripotent stem cells; hematopoietic development; embryoid bodies; CD34+ cells
      Changed by: Mgr. Pavel Šimara, Ph.D., učo 67594. Changed: 2/3/2018 10:06.
      More: https://is.muni.cz/publication/1202839/en
    11. HP1B-dependent recruitment of UBF1 to irradiated chromatin occurs simultaneously with CPDs (HP1B-dependent recruitment of UBF1 to 3 irradiated chromatin occurs simultaneously with 4 CPDs)
      STIXOVÁ, Lenka, Petra SEHNALOVÁ, Soňa LEGARTOVÁ, Jana SUCHÁNKOVÁ, Tereza HRUŠKOVÁ, Stanislav KOZUBEK, Dmitry SOROKIN, Pavel MATULA, Ivan RAŠKA, Aleš KOVAŘÍK, Jaroslav FULNEČEK and Eva BÁRTOVÁ. HP1B-dependent recruitment of UBF1 to irradiated chromatin occurs simultaneously with CPDs (HP1B-dependent recruitment of UBF1 to 3 irradiated chromatin occurs simultaneously with 4 CPDs). Epigenetics & Chromatin. BioMed Central, 2014, vol. 7, No 39, p. 1-17. ISSN 1756-8935. Available from: https://dx.doi.org/10.1186/1756-8935-7-39.
      Name (in English): HP1B-dependent recruitment of UBF1 to 3 irradiated chromatin occurs simultaneously with 4 CPDs
      RIV/00216224:14330/14:00074061 Article in a journal. Genetics and molecular biology. English. United Kingdom of Great Britain and Northern Ireland.
      Stixová, Lenka (203 Czech Republic) -- Sehnalová, Petra (203 Czech Republic) -- Legartová, Soňa (703 Slovakia) -- Suchánková, Jana (203 Czech Republic) -- Hrušková, Tereza (203 Czech Republic) -- Kozubek, Stanislav (203 Czech Republic) -- Sorokin, Dmitry (643 Russian Federation, guarantor, belonging to the institution) -- Matula, Pavel (203 Czech Republic, belonging to the institution) -- Raška, Ivan (203 Czech Republic) -- Kovařík, Aleš (203 Czech Republic) -- Fulneček, Jaroslav (203 Czech Republic) -- Bártová, Eva (203 Czech Republic)
      Keywords in English: DNA-damage response; DNA repair; Irradiation; Live-cell studies; Nucleolus; UBF1
      Changed by: doc. RNDr. Pavel Matula, Ph.D., učo 2927. Changed: 28/4/2015 13:35.
      More: https://is.muni.cz/publication/1205176/en
    12. Image Analysis of Gene Locus Positions within Chromosome Territories in Human Lymphocytes
      ŠTĚPKA, Karel and Martin FALK. Image Analysis of Gene Locus Positions within Chromosome Territories in Human Lymphocytes. In Petr Hliněný, Zdeněk Dvořák, Jiří Jaroš, Jan Kofroň, Jan Kořenek, Petr Matula, Karel Pala. Mathematical and Engineering Methods in Computer Science : Volume 8934 of the series Lecture Notes in Computer Science. Neuveden: Springer International Publishing, 2014, p. 125-134. ISBN 978-3-319-14895-3. Available from: https://dx.doi.org/10.1007/978-3-319-14896-0_11.
      URL
      Name in Czech: Analýza obrazu genových lokusů v chromozomových teritoriích lidských lymfocytů
      RIV/00216224:14330/14:00082098 Proceedings paper. Informatics. English.
      Štěpka, Karel (203 Czech Republic, guarantor, belonging to the institution) -- Falk, Martin (203 Czech Republic)
      Keywords in English: image analysis;fluorescence confocal microscopy;gene locus detection;chromosome territory
      Type of proceedings: post-proceedings
      International impact: yes
      Reviewed: yes
      Changed by: RNDr. Pavel Šmerk, Ph.D., učo 3880. Changed: 2/5/2016 05:32.
      More: https://is.muni.cz/publication/1196984/en
    13. Intravenous insulin therapy during lung resection does not affect lung function or surfactant proteins
      RUČKA, Zdeněk, Irena KRONTORÁD KOUTNÁ, Lenka TESAŘOVÁ, Michaela POTĚŠILOVÁ, Stanislav STEJSKAL, Pavel ŠIMARA, Petr VAŇHARA, Jan DOLEŽEL, Václav ZVONÍČEK, Oldřich COUFAL and Ivan ČAPOV. Intravenous insulin therapy during lung resection does not affect lung function or surfactant proteins. BMC Pulmonary Medicine. London, United Kingdom: BIOMED CENTRAL LTD, 2014, vol. 14, No 1, p. 155-163. ISSN 1471-2466. Available from: https://dx.doi.org/10.1186/1471-2466-14-155.
      RIV/00216224:14330/14:00073971 Article in a journal. Pneumology. English. United Kingdom of Great Britain and Northern Ireland.
      Ručka, Zdeněk (203 Czech Republic, belonging to the institution) -- Krontorád Koutná, Irena (203 Czech Republic, guarantor, belonging to the institution) -- Tesařová, Lenka (203 Czech Republic, belonging to the institution) -- Potěšilová, Michaela (203 Czech Republic, belonging to the institution) -- Stejskal, Stanislav (203 Czech Republic, belonging to the institution) -- Šimara, Pavel (203 Czech Republic, belonging to the institution) -- Vaňhara, Petr (203 Czech Republic, belonging to the institution) -- Doležel, Jan (203 Czech Republic) -- Zvoníček, Václav (203 Czech Republic) -- Coufal, Oldřich (203 Czech Republic) -- Čapov, Ivan (203 Czech Republic)
      Keywords in English: surfactant proteins; insulin therapy
      Changed by: RNDr. Pavel Šmerk, Ph.D., učo 3880. Changed: 27/4/2015 04:28.
      More: https://is.muni.cz/publication/1202841/en
    14. NON-RIGID CONTOUR-BASED TEMPORAL REGISTRATION OF 2D CELL NUCLEI IMAGES USING THE NAVIER EQUATION
      SOROKIN, Dmitry, Marco TEKTONIDIS, Karl ROHR and Pavel MATULA. NON-RIGID CONTOUR-BASED TEMPORAL REGISTRATION OF 2D CELL NUCLEI IMAGES USING THE NAVIER EQUATION. Online. In IEEE International Symposium on Biomedical Imaging: Nano to Macro. Beijing: IEEE, 2014, p. 746-749. ISBN 978-1-4673-1959-1. Available from: https://dx.doi.org/10.1109/ISBI.2014.6867978.
      RIV/00216224:14330/14:00073449 Proceedings paper. Use of computers, robotics and its application. English. United States of America.
      Sorokin, Dmitry (643 Russian Federation, guarantor, belonging to the institution) -- Tektonidis, Marco (276 Germany) -- Rohr, Karl (276 Germany) -- Matula, Pavel (203 Czech Republic, belonging to the institution)
      Keywords in English: Biomedical image analysis; Image sequence analysis; Contour-based registration
      Changed by: RNDr. Pavel Šmerk, Ph.D., učo 3880. Changed: 27/2/2018 06:44.
      More: https://is.muni.cz/publication/1139066/en
    15. Objective Comparison of Particle Tracking Methods
      CHENOUARD, Nicolas, Ihor SMAL, Fabrice DE CHAUMONT, Martin MAŠKA, Ivo F SBALZARINI, Yuanhao GONG, Janick CARDINALE, Craig CARTHEL, Stefano CORALUPPI, Mark WINTER, Andrew R COHEN, William J GODINEZ, Karl ROHR, Yannis KALAIDZIDIS, Liang LIANG, James DUNCAN, Hongying SHEN, Yingke XU, Klas E G MAGNUSSON, Joakim JALDÉN, Helen M BLAU, Perrine PAUL-GILLOTEAUX, Philippe ROUDOT, Charles KERVRANN, François WAHARTE, Jean-Yves TINEVEZ, Spencer L SHORTE, Joost WILLEMSE, Katherine CELLER, Gilles P VAN WEZEL, Han-Wei DAN, Yuh-Show TSAI, Carlos ORTIZ-DE-SOLÓRZANO, Jean-Christophe OLIVO-MARIN and Erik MEIJERING. Objective Comparison of Particle Tracking Methods. Nature Methods. 2014, vol. 11, No 3, p. 281-289. ISSN 1548-7091. Available from: https://dx.doi.org/10.1038/nmeth.2808.
      URL
      RIV/00216224:14330/14:00074917 Article in a journal. Informatics. English. United States of America.
      Chenouard, Nicolas (250 France) -- Smal, Ihor (804 Ukraine) -- de Chaumont, Fabrice (250 France) -- Maška, Martin (203 Czech Republic, guarantor, belonging to the institution) -- Sbalzarini, Ivo F (756 Switzerland) -- Gong, Yuanhao (156 China) -- Cardinale, Janick (756 Switzerland) -- Carthel, Craig (840 United States of America) -- Coraluppi, Stefano (840 United States of America) -- Winter, Mark (840 United States of America) -- Cohen, Andrew R (840 United States of America) -- Godinez, William J (276 Germany) -- Rohr, Karl (276 Germany) -- Kalaidzidis, Yannis (300 Greece) -- Liang, Liang (156 China) -- Duncan, James (840 United States of America) -- Shen, Hongying (156 China) -- Xu, Yingke (156 China) -- Magnusson, Klas E G (752 Sweden) -- Jaldén, Joakim (752 Sweden) -- Blau, Helen M (826 United Kingdom of Great Britain and Northern Ireland) -- Paul-Gilloteaux, Perrine (250 France) -- Roudot, Philippe (250 France) -- Kervrann, Charles (250 France) -- Waharte, François (250 France) -- Tinevez, Jean-Yves (250 France) -- Shorte, Spencer L (826 United Kingdom of Great Britain and Northern Ireland) -- Willemse, Joost (528 Netherlands) -- Celler, Katherine (124 Canada) -- van Wezel, Gilles P (528 Netherlands) -- Dan, Han-Wei (158 Taiwan) -- Tsai, Yuh-Show (158 Taiwan) -- Ortiz-de-Solórzano, Carlos (724 Spain) -- Olivo-Marin, Jean-Christophe (250 France) -- Meijering, Erik (528 Netherlands)
      Keywords in English: Particle tracking;performance comparison;fluorescence microscopy
      International impact: yes
      Reviewed: yes
      Changed by: RNDr. Pavel Šmerk, Ph.D., učo 3880. Changed: 27/4/2015 21:48.
      More: https://is.muni.cz/publication/1160075/en
    16. On Proper Simulation of Phenomena Influencing Image Formation in Fluorescence Microscopy
      SVOBODA, David, Vladimír ULMAN, Luděk MATYSKA, Martin MAŠKA, Ján BELLA and Stanislav STEJSKAL. On Proper Simulation of Phenomena Influencing Image Formation in Fluorescence Microscopy. In 2014 IEEE International Conference on Image Processing. Neuveden: IEEE Signal Processing Society, 2014, p. 3944-3948. ISBN 978-1-4799-5750-7. Available from: https://dx.doi.org/10.1109/ICIP.2014.7025801.
      URL
      RIV/00216224:14330/14:00073637 Proceedings paper. Use of computers, robotics and its application. English. United States of America.
      Svoboda, David (203 Czech Republic, guarantor, belonging to the institution) -- Ulman, Vladimír (203 Czech Republic, belonging to the institution) -- Matyska, Luděk (203 Czech Republic, belonging to the institution) -- Maška, Martin (203 Czech Republic, belonging to the institution) -- Bella, Ján (703 Slovakia, belonging to the institution) -- Stejskal, Stanislav (203 Czech Republic, belonging to the institution)
      Keywords in English: Simulation; Biomedical imaging; Fluorescence microscopy; Photobleaching; Uneven illumination
      Type of proceedings: post-proceedings
      International impact: yes
      Reviewed: yes
      Changed by: doc. RNDr. David Svoboda, Ph.D., učo 2824. Changed: 3/5/2016 10:48.
      More: https://is.muni.cz/publication/1183286/en
    17. PRMT1 arginine methyltransferase accumulates in cytoplasmic bodies that respond to selective inhibition and DNA damage
      SUCHÁNKOVÁ, Jana, Soňa LEGARTOVÁ, Petra SEHNALOVÁ, Stanislav KOZUBEK, Sergio VALENTE, Donatella LABELLA, Antonello MAI, Carmen ECKERICH, Frank O. FACKELMAYER, Dmitry SOROKIN and Eva BÁRTOVÁ. PRMT1 arginine methyltransferase accumulates in cytoplasmic bodies that respond to selective inhibition and DNA damage. European Journal of Histochemistry. Pavia, Italy: PAGEPress, 2014, vol. 58, No 2, p. 139-151. ISSN 1121-760X. Available from: https://dx.doi.org/10.4081/ejh.2014.2389.
      RIV/00216224:14330/14:00073586 Article in a journal. Genetics and molecular biology. English. Italy.
      Suchánková, Jana (203 Czech Republic) -- Legartová, Soňa (703 Slovakia) -- Sehnalová, Petra (203 Czech Republic) -- Kozubek, Stanislav (203 Czech Republic) -- Valente, Sergio (380 Italy) -- Labella, Donatella (380 Italy) -- Mai, Antonello (380 Italy) -- Eckerich, Carmen (300 Greece) -- Fackelmayer, Frank O. (300 Greece) -- Sorokin, Dmitry (643 Russian Federation, guarantor, belonging to the institution) -- Bártová, Eva (203 Czech Republic)
      Keywords in English: Epigenetics; PRMTs; epi-drugs; arginine methylation; DNA repair
      Changed by: RNDr. Pavel Šmerk, Ph.D., učo 3880. Changed: 9/9/2019 12:54.
      More: https://is.muni.cz/publication/1179522/en
    18. RSurf - the Efficient Texture-Based Descriptor for Fluorescence Microscopy Images of HEp-2 Cells
      MAJTNER, Tomáš, Roman STOKLASA and David SVOBODA. RSurf - the Efficient Texture-Based Descriptor for Fluorescence Microscopy Images of HEp-2 Cells. In 22nd International Conference on Pattern Recognition. Los Alamitos, California: IEEE Computer Society, 2014, p. 1194-1199. ISBN 978-1-4799-5208-3. Available from: https://dx.doi.org/10.1109/ICPR.2014.215.
      RIV/00216224:14330/14:00073550 Proceedings paper. Use of computers, robotics and its application. English. United States of America.
      Majtner, Tomáš (703 Slovakia, guarantor, belonging to the institution) -- Stoklasa, Roman (703 Slovakia, belonging to the institution) -- Svoboda, David (203 Czech Republic, belonging to the institution)
      Keywords in English: texture descriptor;rsurf;hep-2
      Type of proceedings: post-proceedings
      International impact: yes
      Reviewed: yes
      Changed by: RNDr. Ing. Bc. Tomáš Majtner, Ph.D., učo 172786. Changed: 9/1/2015 15:37.
      More: https://is.muni.cz/publication/1173479/en
    19. RSurf Texture Descriptor (software)
      MAJTNER, Tomáš, Roman STOKLASA and David SVOBODA. RSurf Texture Descriptor. 2014.
      http://cbia.fi.muni.cz/projects/rsurf-texture-descriptor.html
      Name in Czech: Popisovač textúry RSurf
      RIV/00216224:14330/14:00074012 Software. Computer hardware and software. English. Czech Republic.
      Majtner, Tomáš (703 Slovakia, belonging to the institution) -- Stoklasa, Roman (703 Slovakia, belonging to the institution) -- Svoboda, David (203 Czech Republic, guarantor, belonging to the institution)
      Keywords in English: image descriptor; Pattern recognition; RSurf; HEp-2 cells;
      International impact: yes
      Changed by: RNDr. Ing. Bc. Tomáš Majtner, Ph.D., učo 172786. Changed: 29/10/2014 13:48.
      More: https://is.muni.cz/publication/1204273/en
    20. Texture Analysis Using 3D Gabor Features and 3D MPEG-7 Edge Histogram Descriptor in Fluorescence Microscopy
      MAJTNER, Tomáš and David SVOBODA. Texture Analysis Using 3D Gabor Features and 3D MPEG-7 Edge Histogram Descriptor in Fluorescence Microscopy. Online. In 4th International Conference on 3D Imaging (IC3D). Los Alamitos, California: IEEE Computer Society, 2014, p. 1-7. ISBN 978-1-4799-8023-9. Available from: https://dx.doi.org/10.1109/IC3D.2014.7032576.
      RIV/00216224:14330/14:00074031 Proceedings paper. Use of computers, robotics and its application. English. United States of America.
      Majtner, Tomáš (703 Slovakia, belonging to the institution) -- Svoboda, David (203 Czech Republic, guarantor, belonging to the institution)
      Keywords in English: 3D images; Edge Histogram Descriptor; Gabor filters; fluorescence microscopy
      Type of proceedings: post-proceedings
      International impact: yes
      Reviewed: yes
      Changed by: RNDr. Ing. Bc. Tomáš Majtner, Ph.D., učo 172786. Changed: 6/3/2015 15:45.
      More: https://is.muni.cz/publication/1204559/en
    21. Visualizing Stable Features in Live Cell Nucleus for Evaluation of the Cell Global Motion Compensation
      SOROKIN, Dmitry, Jana SUCHÁNKOVÁ, Eva BÁRTOVÁ and Pavel MATULA. Visualizing Stable Features in Live Cell Nucleus for Evaluation of the Cell Global Motion Compensation. Folia biologica. Univerzita Karlova, 2014, vol. 60, (Suppl 1), p. 45-49. ISSN 0015-5500.
      Name (in English): Visualizing Stable Features in Live Cell Nucleus for Evaluation of the Cell Global Motion Compensation
      RIV/00216224:14330/14:00073848 Article in a journal. Genetics and molecular biology. English. Czech Republic.
      Sorokin, Dmitry (643 Russian Federation, guarantor, belonging to the institution) -- Suchánková, Jana (203 Czech Republic) -- Bártová, Eva (203 Czech Republic) -- Matula, Pavel (203 Czech Republic, belonging to the institution)
      Keywords in English: cell global motion compensation; UV laser bleaching image registration; stable features; algorithm evaluation
      Changed by: RNDr. Pavel Šmerk, Ph.D., učo 3880. Changed: 27/4/2015 04:11.
      More: https://is.muni.cz/publication/1197310/en

    2013

    1. Algorithms for Efficient Computation of Convolution
      KARAS, Pavel and David SVOBODA. Algorithms for Efficient Computation of Convolution. In Design and Architectures for Digital Signal Processing. 1st ed. Rijeka (CRO): InTech, 2013, p. 179-208. ISBN 978-953-51-0874-0. Available from: https://dx.doi.org/10.5772/3456.
      URL
      Name in Czech: Algoritmy pro efektivní výpočet konvoluce
      RIV/00216224:14330/13:00065930 Chapter(s) of a specialized book. Informatics. English. Croatia.
      Karas, Pavel (203 Czech Republic, belonging to the institution) -- Svoboda, David (203 Czech Republic, guarantor, belonging to the institution)
      Keywords in English: convolution; algorithms; FFT; separable convolution; recursive filters; parallelization; decomposition
      International impact: yes
      Reviewed: yes
      Changed by: RNDr. Pavel Šmerk, Ph.D., učo 3880. Changed: 28/4/2014 11:28.
      More: https://is.muni.cz/publication/992722/en
    2. Apoptosis in chronic myeloid leukemia cells transiently treated with imatinib or dasatinib is caused by residual BCR-ABL kinase inhibition.
      ŠIMARA, Pavel, Stanislav STEJSKAL, Irena KRONTORÁD KOUTNÁ, David POTĚŠIL, Lenka TESAŘOVÁ, Michaela POTĚŠILOVÁ, Zbyněk ZDRÁHAL and Jiří MAYER. Apoptosis in chronic myeloid leukemia cells transiently treated with imatinib or dasatinib is caused by residual BCR-ABL kinase inhibition. American Journal of Hematology. NJ 07030-577 United States: John Wiley & Sons, 2013, vol. 88, No 5, p. 385-393. ISSN 0361-8609. Available from: https://dx.doi.org/10.1002/ajh.23419.
      PubMed
      RIV/00216224:14330/13:00066079 Article in a journal. Oncology and haematology. English. United States of America.
      Šimara, Pavel (203 Czech Republic, guarantor, belonging to the institution) -- Stejskal, Stanislav (203 Czech Republic, belonging to the institution) -- Krontorád Koutná, Irena (203 Czech Republic, belonging to the institution) -- Potěšil, David (203 Czech Republic, belonging to the institution) -- Tesařová, Lenka (203 Czech Republic, belonging to the institution) -- Potěšilová, Michaela (203 Czech Republic, belonging to the institution) -- Zdráhal, Zbyněk (203 Czech Republic, belonging to the institution) -- Mayer, Jiří (203 Czech Republic, belonging to the institution)
      Keywords in English: Chronic Myeloid Leukemia; Imatinib; Dasatinib
      Changed by: Mgr. Pavla Foltynová, Ph.D., učo 106624. Changed: 29/3/2019 14:00.
      More: https://is.muni.cz/publication/1094552/en
    3. Automated Cell Counting in Bürker Chamber
      ŠTĚPKA, Karel. Automated Cell Counting in Bürker Chamber. In J.-K. Kamarainen and M. Koskela. 18th Scandinavian Conference on Image Analysis, SCIA 2013. Espoo (Finland): Springer, 2013, p. 236-245. ISBN 978-3-642-38885-9. Available from: https://dx.doi.org/10.1007/978-3-642-38886-6_23.
      URL
      Name in Czech: Automatické počítání buněk v Bürkerově komůrce
      RIV/00216224:14330/13:00068072 Proceedings paper. Informatics. English. Finland.
      Štěpka, Karel (203 Czech Republic, guarantor, belonging to the institution)
      Keywords in English: cell counting; image analysis; hemocytometer
      Type of proceedings: post-proceedings
      International impact: yes
      Reviewed: yes
      Changed by: Mgr. Karel Štěpka, Ph.D., učo 172454. Changed: 3/4/2014 14:04.
      More: https://is.muni.cz/publication/1095819/en
    4. Automatic Quantification of Filopodia-Based Cell Migration
      MAŠKA, Martin, Xabier MORALES, Arrate MUÑOZ-BARRUTIA, Ana ROUZAUT and Carlos ORTIZ-DE-SOLÓRZANO. Automatic Quantification of Filopodia-Based Cell Migration. Online. In 10th IEEE International Symposium on Biomedical Imaging. San Francisco: IEEE, 2013, p. 668-671. ISBN 978-1-4673-6454-6. Available from: https://dx.doi.org/10.1109/ISBI.2013.6556563.
      URL
      RIV/00216224:14330/13:00068040 Proceedings paper. Informatics. English. United States of America.
      Maška, Martin (203 Czech Republic, guarantor, belonging to the institution) -- Morales, Xabier (724 Spain) -- Muñoz-Barrutia, Arrate (724 Spain) -- Rouzaut, Ana (724 Spain) -- Ortiz-de-Solórzano, Carlos (724 Spain)
      Keywords in English: Filopodium segmentation;fluorescence microscopy;steerable filtering;geodesic distance
      Type of proceedings: pre-proceedings
      International impact: yes
      Reviewed: yes
      Changed by: RNDr. Pavel Šmerk, Ph.D., učo 3880. Changed: 24/4/2014 18:07.
      More: https://is.muni.cz/publication/1094756/en
    5. Deconvolution of huge 3-D images: Parallelization strategies on a multi-GPU system
      KARAS, Pavel, Michal KUDERJAVÝ and David SVOBODA. Deconvolution of huge 3-D images: Parallelization strategies on a multi-GPU system. In Kołodziej, Joanna and Martino, Beniamino and Talia, Domenico and Xiong, Kaiqi. Algorithms and Architectures for Parallel Processing. Neuveden: Springer International Publishing, 2013, p. 279-290. ISBN 978-3-319-03858-2. Available from: https://dx.doi.org/10.1007/978-3-319-03859-9_24.
      URL
      Name in Czech: Dekonvoluce velkých 3-D obrazů: Strategie pro paralelizaci na multi-GPU systému
      Name (in English): Deconvolution of huge 3-D images: Parallelization strategies on a multi-GPU system
      RIV/00216224:14330/13:00066399 Proceedings paper. Informatics. English. Italy.
      Karas, Pavel (203 Czech Republic, guarantor, belonging to the institution) -- Kuderjavý, Michal (203 Czech Republic, belonging to the institution) -- Svoboda, David (703 Slovakia, belonging to the institution)
      Keywords in English: deconvolution; gpu; multi-gpu; parallelization; implementation; algorithm; em-mle; richardson-lucy; ictm; wiener
      International impact: yes
      Reviewed: yes
      Changed by: RNDr. Pavel Karas, Ph.D., učo 106808. Changed: 29/12/2013 12:04.
      More: https://is.muni.cz/publication/1124393/en
    6. Differential effects of insulin and dexamethasone on pulmonary surfactant-associated genes and proteins in A549 and H441 cells and lung tissue
      RUČKA, Zdeněk, Petr VAŇHARA, Irena KRONTORÁD KOUTNÁ, Lenka TESAŘOVÁ, Michaela POTĚŠILOVÁ, Stanislav STEJSKAL, Pavel ŠIMARA, Jan DOLEŽEL, Václav ZVONÍČEK, Oldřich COUFAL and Ivan ČAPOV. Differential effects of insulin and dexamethasone on pulmonary surfactant-associated genes and proteins in A549 and H441 cells and lung tissue. INTERNATIONAL JOURNAL OF MOLECULAR MEDICINE. UNITED STATES: SPANDIDOS PUBL LTD, 2013, vol. 32, No 1, p. 211-218. ISSN 1107-3756. Available from: https://dx.doi.org/10.3892/ijmm.2013.1363.
      PubMed
      RIV/00216224:14330/13:00066090 Article in a journal. Genetics and molecular biology. English. United States of America.
      Ručka, Zdeněk (203 Czech Republic, belonging to the institution) -- Vaňhara, Petr (203 Czech Republic, belonging to the institution) -- Krontorád Koutná, Irena (203 Czech Republic, guarantor, belonging to the institution) -- Tesařová, Lenka (203 Czech Republic, belonging to the institution) -- Potěšilová, Michaela (203 Czech Republic, belonging to the institution) -- Stejskal, Stanislav (203 Czech Republic, belonging to the institution) -- Šimara, Pavel (203 Czech Republic, belonging to the institution) -- Doležel, Jan (203 Czech Republic) -- Zvoníček, Václav (203 Czech Republic) -- Coufal, Oldřich (203 Czech Republic) -- Čapov, Ivan (203 Czech Republic)
      Keywords in English: insulin; dexamethasone; surfactant; lung carcinoma; A549; H441
      Changed by: Mgr. Pavel Šimara, Ph.D., učo 67594. Changed: 2/3/2018 10:09.
      More: https://is.muni.cz/publication/1102512/en
    7. Hybrid detectors improved time-lapse confocal microscopy of PML and 53BP1 nuclear body co-localization in DNA lesions
      FOLTÁNKOVÁ, Veronika, Pavel MATULA, Dmitry SOROKIN, Stanislav KOZUBEK and Eva BÁRTOVÁ. Hybrid detectors improved time-lapse confocal microscopy of PML and 53BP1 nuclear body co-localization in DNA lesions. Microscopy and Microanalysis. Saarbrücken: Cambridge University Press, 2013, Volume 19, Issue 2, p. 360-369. ISSN 1431-9276. Available from: https://dx.doi.org/10.1017/S1431927612014353.
      URL
      RIV/00216224:14330/13:00065961 Article in a journal. Genetics and molecular biology. English. Germany.
      Foltánková, Veronika (203 Czech Republic) -- Matula, Pavel (203 Czech Republic, guarantor, belonging to the institution) -- Sorokin, Dmitry (643 Russian Federation, belonging to the institution) -- Kozubek, Stanislav (203 Czech Republic) -- Bártová, Eva (203 Czech Republic)
      Keywords in English: DNA damage;chromatin; 53BP1; PML bodies; hybrid detectors; confocal microscopy
      International impact: yes
      Reviewed: yes
      Changed by: RNDr. Pavel Šmerk, Ph.D., učo 3880. Changed: 30/4/2014 08:46.
      More: https://is.muni.cz/publication/1076529/en
    8. On generating benchmark datasets for evaluation of segmentation and tracking algorithms in fluorescence microscopy
      SVOBODA, David. On generating benchmark datasets for evaluation of segmentation and tracking algorithms in fluorescence microscopy. In SPlab workshop. 2013.
      RIV/00216224:14330/13:00066770 Requested lectures. Use of computers, robotics and its application. English. Czech Republic.
      Svoboda, David (203 Czech Republic, guarantor, belonging to the institution)
      Keywords in English: simulation; benchmark datasets; image processing; fluorescence microscopy
      Type of participation: requested lecture
      Changed by: doc. RNDr. David Svoboda, Ph.D., učo 2824. Changed: 22/1/2014 13:19.
      More: https://is.muni.cz/publication/1160205/en
    9. Pluripotent stem cells and gene therapy
      ŠIMARA, Pavel, Jason MOTL and Dan KAUFMAN. Pluripotent stem cells and gene therapy. Translational Research. 2013, vol. 161, No 4, p. 284-292. ISSN 1931-5244. Available from: https://dx.doi.org/10.1016/j.trsl.2013.01.001.
      PubMed
      RIV/00216224:14330/13:00068030 Article in a journal. Genetics and molecular biology. English. United States of America.
      Šimara, Pavel (203 Czech Republic, guarantor, belonging to the institution) -- Motl, Jason (840 United States of America) -- Kaufman, Dan (840 United States of America)
      Keywords in English: pluripotent stem cells; gene therapy
      Changed by: Mgr. Pavel Šimara, Ph.D., učo 67594. Changed: 2/3/2018 10:11.
      More: https://is.muni.cz/publication/1094550/en
    10. Segmentation and Shape Tracking of Whole Fluorescent Cells Based on the Chan-Vese Model
      MAŠKA, Martin, Ondřej DANĚK, Saray GARASA, Ana ROUZAUT, Arrate MUÑOZ-BARRUTIA and Carlos ORTIZ-DE-SOLÓRZANO. Segmentation and Shape Tracking of Whole Fluorescent Cells Based on the Chan-Vese Model. IEEE Transactions on Medical Imaging. 2013, vol. 32, No 6, p. 995-1006. ISSN 0278-0062. Available from: https://dx.doi.org/10.1109/TMI.2013.2243463.
      URL
      RIV/00216224:14330/13:00081861 Article in a journal. Morphological game parks and cytology. English. United States of America.
      Maška, Martin (203 Czech Republic, guarantor, belonging to the institution) -- Daněk, Ondřej (203 Czech Republic, belonging to the institution) -- Garasa, Saray (724 Spain) -- Rouzaut, Ana (724 Spain) -- Muñoz-Barrutia, Arrate (724 Spain) -- Ortiz-de-Solórzano, Carlos (724 Spain)
      Keywords in English: Cell tracking;Chan–Vese model;fluorescence microscopy;graph cut optimization;level set framework
      International impact: yes
      Reviewed: yes
      Changed by: doc. RNDr. Martin Maška, Ph.D., učo 60734. Changed: 13/4/2018 14:55.
      More: https://is.muni.cz/publication/1094754/en
    11. Towards a Realistic Distribution of Cells in Synthetically Generated 3D Cell Populations
      SVOBODA, David and Vladimír ULMAN. Towards a Realistic Distribution of Cells in Synthetically Generated 3D Cell Populations. In Alfredo Petrosino. 17th International Conference on Image Analysis and Processing - ICIAP 2013. LNCS 8157, Part II. Berlin, Heidelberg: Springer-Verlag, 2013, p. 429-438. ISBN 978-3-642-41183-0. Available from: https://dx.doi.org/10.1007/978-3-642-41184-7_44.
      RIV/00216224:14330/13:00066208 Proceedings paper. Use of computers, robotics and its application. English. Italy.
      Svoboda, David (203 Czech Republic, guarantor, belonging to the institution) -- Ulman, Vladimír (203 Czech Republic, belonging to the institution)
      Keywords in English: cell populations; simulation; cross-correlation
      Type of proceedings: post-proceedings
      International impact: yes
      Reviewed: yes
      Changed by: doc. RNDr. David Svoboda, Ph.D., učo 2824. Changed: 12/9/2014 13:41.
      More: https://is.muni.cz/publication/1112258/en

    2012

    1. Apoptosis in Chronic Myeloid Leukemia Cells Transiently Treated with Imatinib or Dasatinib Is Caused by Residual BCR-ABL Kinase Inhibition
      ŠIMARA, Pavel, Stanislav STEJSKAL, Irena KRONTORÁD KOUTNÁ, David POTĚŠIL, Lenka TESAŘOVÁ, Michaela POTĚŠILOVÁ, Zbyněk ZDRÁHAL and Jiří MAYER. Apoptosis in Chronic Myeloid Leukemia Cells Transiently Treated with Imatinib or Dasatinib Is Caused by Residual BCR-ABL Kinase Inhibition. In 54th ASH Annual Meeting and Exposition. 2012. ISSN 1528-0020.
      ASH Abstracts, Blood, November 16, 2012, Volume 120, Issue 21
      Name (in English): Apoptosis in Chronic Myeloid Leukemia Cells Transiently Treated with Imatinib or Dasatinib Is Caused by Residual BCR-ABL Kinase Inhibition
      RIV/00216224:14330/12:00057983 Conference abstract. Oncology and haematology. English. United States of America.
      Šimara, Pavel (203 Czech Republic, belonging to the institution) -- Stejskal, Stanislav (203 Czech Republic, belonging to the institution) -- Krontorád Koutná, Irena (203 Czech Republic, guarantor, belonging to the institution) -- Potěšil, David (203 Czech Republic, belonging to the institution) -- Tesařová, Lenka (203 Czech Republic, belonging to the institution) -- Potěšilová, Michaela (203 Czech Republic, belonging to the institution) -- Zdráhal, Zbyněk (203 Czech Republic, belonging to the institution) -- Mayer, Jiří (203 Czech Republic, belonging to the institution)
      Keywords in English: Chronic Myeloid Leukemia; Imatinib; Dasatinib
      Changed by: Mgr. Pavel Šimara, Ph.D., učo 67594. Changed: 2/1/2013 11:48.
      More: https://is.muni.cz/publication/1079654/en
    2. BCR-ABL activity measured by 50% inhibitory concentration for imatinib, p-CrkL/CrkL ratio or p-CrkL ratio in CD34+ cells of patients with chronic myeloid leukemia does not predict treatment response.
      ŠIMARA, Pavel, Martina PETERKOVÁ, Stanislav STEJSKAL, Michaela POTĚŠILOVÁ, Irena KRONTORÁD KOUTNÁ, Zdeněk RÁČIL, Filip RÁZGA, Tomáš JURČEK, Dana DVOŘÁKOVÁ and Jiří MAYER. BCR-ABL activity measured by 50% inhibitory concentration for imatinib, p-CrkL/CrkL ratio or p-CrkL ratio in CD34+ cells of patients with chronic myeloid leukemia does not predict treatment response. Leukemia & lymphoma. England: Informa Healthcare, 2012, vol. 53, No 8, p. 1627-1629. ISSN 1042-8194. Available from: https://dx.doi.org/10.3109/10428194.2012.656104.
      URL
      RIV/00216224:14330/12:00059688 Article in a journal. Oncology and haematology. English. United Kingdom of Great Britain and Northern Ireland.
      Šimara, Pavel (203 Czech Republic, belonging to the institution) -- Peterková, Martina (203 Czech Republic, belonging to the institution) -- Stejskal, Stanislav (203 Czech Republic, belonging to the institution) -- Potěšilová, Michaela (203 Czech Republic, belonging to the institution) -- Krontorád Koutná, Irena (203 Czech Republic, guarantor, belonging to the institution) -- Ráčil, Zdeněk (203 Czech Republic, belonging to the institution) -- Rázga, Filip (703 Slovakia, belonging to the institution) -- Jurček, Tomáš (203 Czech Republic, belonging to the institution) -- Dvořáková, Dana (203 Czech Republic, belonging to the institution) -- Mayer, Jiří (203 Czech Republic, belonging to the institution)
      Keywords in English: p-CrkL; chronic myeloid leukemia; imatinib
      Changed by: Mgr. Pavel Šimara, Ph.D., učo 67594. Changed: 2/3/2018 10:12.
      More: https://is.muni.cz/publication/979222/en
    3. Endonuclease G interacts with histone H2B and DNA topoisomerase II alpha during apoptosis
      VAŘECHA, Miroslav, Michaela POTĚŠILOVÁ, Pavel MATULA and Michal KOZUBEK. Endonuclease G interacts with histone H2B and DNA topoisomerase II alpha during apoptosis. Mol Cell Biochem. 2012, vol. 363, 1-2, p. 301-307. ISSN 0300-8177. Available from: https://dx.doi.org/10.1007/s11010-011-1182-x.
      URL
      Name in Czech: Endonukleáza G interaguje s histonem H2B a DNA topoizomerázou II alfa během apoptózy
      RIV/00216224:14330/12:00059138 Article in a journal. Genetics and molecular biology. English. Germany.
      Vařecha, Miroslav (203 Czech Republic, guarantor, belonging to the institution) -- Potěšilová, Michaela (203 Czech Republic, belonging to the institution) -- Matula, Pavel (203 Czech Republic, belonging to the institution) -- Kozubek, Michal (203 Czech Republic, belonging to the institution)
      Keywords in English: endonuclease G; DNA topoisomerase II alpha; histone H2B; FRET; apoptosis
      International impact: yes
      Reviewed: yes
      Changed by: doc. RNDr. Pavel Matula, Ph.D., učo 2927. Changed: 10/4/2013 16:56.
      More: https://is.muni.cz/publication/959855/en
    4. Extension of Tamura Texture Features for 3D Fluorescence Microscopy
      MAJTNER, Tomáš and David SVOBODA. Extension of Tamura Texture Features for 3D Fluorescence Microscopy. In 2012 Second Joint 3DIM/3DPVT Conference: 3D Imaging, Modeling, Processing, Visualization & Transmission. Los Alamitos, CA, USA: IEEE Computer Society, 2012, p. 301-307. ISBN 978-0-7695-4873-9.
      RIV/00216224:14330/12:00057527 Proceedings paper. Use of computers, robotics and its application. English. Switzerland.
      Majtner, Tomáš (703 Slovakia, belonging to the institution) -- Svoboda, David (203 Czech Republic, guarantor, belonging to the institution)
      Keywords in English: image descriptors; Tamura features; 3D
      Type of proceedings: post-proceedings
      International impact: yes
      Reviewed: yes
      Changed by: RNDr. Ing. Bc. Tomáš Majtner, Ph.D., učo 172786. Changed: 21/1/2013 09:09.
      More: https://is.muni.cz/publication/989710/en
    5. Fast Tracking of Fluorescent Cells Based on the Chan-Vese Model
      MAŠKA, Martin, Arrate MUÑOZ-BARRUTIA and Carlos ORTIZ-DE-SOLÓRZANO. Fast Tracking of Fluorescent Cells Based on the Chan-Vese Model. Online. In 9th IEEE International Symposium on Biomedical Imaging. Barcelona: IEEE, 2012, p. 1316–1319. ISBN 978-1-4577-1857-1.
      URL
      Informatics. English. United States of America.
      Keywords in English: Cell tracking;Chan-Vese model;fluorescence microscopy;level set framework
      Type of proceedings: post-proceedings
      International impact: yes
      Reviewed: yes
      Changed by: doc. RNDr. Martin Maška, Ph.D., učo 60734. Changed: 13/12/2015 02:07.
      More: https://is.muni.cz/publication/1094752/en
    6. Flow Cytometry Analysis of Intracelular Protein (Flow cytometrická analýza intracelulárních proteinů)
      KRONTORÁD KOUTNÁ, Irena, Pavel ŠIMARA, Petra ONDRÁČKOVÁ and Lenka TESAŘOVÁ. Flow Cytometry Analysis of Intracelular Protein (Flow cytometrická analýza intracelulárních proteinů). Online. In Ingrid Schmid, University of California, Los Angeles. Flow Cytometry , Recent Perspectives. Rijeka, Croatia: InTech, 2012, p. 421-438. Open science/open minds. ISBN 978-953-51-0626-5. Available from: https://dx.doi.org/10.5772/38400.
      URL
      Name (in English): Flow cytometrická analýza intracelulárních proteinů
      RIV/00216224:14330/12:00064251 Chapter(s) of a specialized book. Genetics and molecular biology. English. Croatia.
      Krontorád Koutná, Irena (203 Czech Republic, guarantor, belonging to the institution) -- Šimara, Pavel (203 Czech Republic, belonging to the institution) -- Ondráčková, Petra (203 Czech Republic) -- Tesařová, Lenka (203 Czech Republic, belonging to the institution)
      Keywords in English: Flow cytometry Intracelular proteins
      Changed by: Mgr. Pavel Šimara, Ph.D., učo 67594. Changed: 2/3/2018 10:12.
      More: https://is.muni.cz/publication/1090252/en
    7. Generation of Synthetic Image Datasets for Time-Lapse Fluorescence Microscopy
      SVOBODA, David and Vladimír ULMAN. Generation of Synthetic Image Datasets for Time-Lapse Fluorescence Microscopy. In Campilho, Aurélio; Kamel, Mohamed. Proceedings of 9th International Conference on Image Analysis and Recognition. LNCS 7325, Part II. Heidelberg: Springer-Verlag, 2012, p. 473-482. ISBN 978-3-642-31297-7. Available from: https://dx.doi.org/10.1007/978-3-642-31298-4_56.
      RIV/00216224:14330/12:00057285 Proceedings paper. Use of computers, robotics and its application. English. Portugal.
      Svoboda, David (203 Czech Republic, guarantor, belonging to the institution) -- Ulman, Vladimír (203 Czech Republic, belonging to the institution)
      Keywords in English: Simulation; Optical flow; 3D image sequences; Fluorescence optical microscopy
      Type of proceedings: post-proceedings
      International impact: yes
      Reviewed: yes
      Changed by: RNDr. Pavel Šmerk, Ph.D., učo 3880. Changed: 23/4/2013 10:18.
      More: https://is.muni.cz/publication/974481/en
    8. GPU Optimization of Convolution for Large 3-D Real Images
      KARAS, Pavel, David SVOBODA and Pavel ZEMČÍK. GPU Optimization of Convolution for Large 3-D Real Images. In Blanc-Talon, Jacques and Philips, Wilfried and Popescu, Dan and Scheunders, Paul and Zemcík, Pavel. Proceedings of the International Conference on Advanced Concepts for Intelligent Vision Systems (ACIVS’12). Neuveden: Springer Berlin / Heidelberg, 2012, p. 59-71. ISBN 978-3-642-33139-8. Available from: https://dx.doi.org/10.1007/978-3-642-33140-4_6.
      URL
      RIV/00216224:14330/12:00057444 Proceedings paper. Informatics. English. Germany.
      Karas, Pavel (203 Czech Republic, guarantor, belonging to the institution) -- Svoboda, David (203 Czech Republic, belonging to the institution) -- Zemčík, Pavel (203 Czech Republic)
      Keywords in English: gpu; convolution; 3-D; image processing
      Type of proceedings: post-proceedings
      International impact: yes
      Reviewed: yes
      Changed by: RNDr. Pavel Karas, Ph.D., učo 106808. Changed: 2/4/2013 15:36.
      More: https://is.muni.cz/publication/984851/en
    9. Relative expression of gammadelta T-cell receptor gene families detected by RT–PCR and capillary electrophoresis
      TESAŘOVÁ, Lenka, Irena KRONTORÁD KOUTNÁ, Magdaléna DVOŘÁKOVÁ and Martin KLABUSAY. Relative expression of gammadelta T-cell receptor gene families detected by RT–PCR and capillary electrophoresis. International Journal of immunogenetics. Blackwell Publishing Ltd, 2012, vol. 39, No 5, p. 381-388. ISSN 1744-3121. Available from: https://dx.doi.org/10.1111/j.1744-313X.2012.01114.x.
      URL
      Name in Czech: relativní exprese gamadelta TCR genových rodin detekována pomocí RT-PCR a kapilární elektroforézy
      RIV/00216224:14330/12:00059919 Article in a journal. Genetics and molecular biology. English. United Kingdom of Great Britain and Northern Ireland.
      Tesařová, Lenka (203 Czech Republic, belonging to the institution) -- Krontorád Koutná, Irena (203 Czech Republic, guarantor, belonging to the institution) -- Dvořáková, Magdaléna (203 Czech Republic, belonging to the institution) -- Klabusay, Martin (203 Czech Republic)
      Keywords in English: Reverse transcription PCR; Capillary electrophoresis; gammadelta T cell; TCR; Vgamma and Vdelta gene families
      Changed by: Mgr. Lenka Tesařová, Ph.D., učo 78340. Changed: 2/3/2018 10:13.
      More: https://is.muni.cz/publication/981977/en
    10. Smooth Chan-Vese Segmentation via Graph Cuts
      DANĚK, Ondřej, Pavel MATULA, Martin MAŠKA and Michal KOZUBEK. Smooth Chan-Vese Segmentation via Graph Cuts. Pattern recognition letters : an official publication of the International Association for Pattern Recognition. Amsterdam: Elsevier, 2012, vol. 33, No 10, p. 1405-1410. ISSN 0167-8655. Available from: https://dx.doi.org/10.1016/j.patrec.2012.03.013.
      URL
      Name in Czech: Hladká Chan-Vese segmentace pomocí grafových řezů
      RIV/00216224:14330/12:00057198 Article in a journal. Informatics. English. Netherlands.
      Daněk, Ondřej (203 Czech Republic, guarantor, belonging to the institution) -- Matula, Pavel (203 Czech Republic, belonging to the institution) -- Maška, Martin (203 Czech Republic) -- Kozubek, Michal (203 Czech Republic, belonging to the institution)
      Keywords in English: image segmentation; graph cut framework; Chan-Vese model; boundary smoothness; memory consumption
      International impact: yes
      Reviewed: yes
      Changed by: RNDr. Pavel Šmerk, Ph.D., učo 3880. Changed: 22/4/2013 05:21.
      More: https://is.muni.cz/publication/948670/en

    2011

    1. A Simple Topology Preserving Max-Flow Algorithm for Graph Cut Based Image Segmentation
      DANĚK, Ondřej and Martin MAŠKA. A Simple Topology Preserving Max-Flow Algorithm for Graph Cut Based Image Segmentation. Online. In Sixth Doctoral Workshop on Mathematical and Engineering Methods in Computer Science (Selected Papers). Saarbrücken, Warden: Schloss Dagstuhl Publishing, 2011, p. 19-25. ISBN 978-3-939897-22-4.
      URL
      Name in Czech: Jednoduchý topologii zachovávající algoritmus pro segmentaci obrazu pomocí grafových řezů
      RIV/00216224:14330/11:00051805 Proceedings paper. Informatics. English. Germany.
      Daněk, Ondřej (203 Czech Republic, guarantor, belonging to the institution) -- Maška, Martin (203 Czech Republic, belonging to the institution)
      Keywords in English: maximum flow algorithm; topology preserving; image segmentation; graph cuts
      Type of proceedings: post-proceedings
      International impact: yes
      Reviewed: yes
      Changed by: doc. RNDr. Martin Maška, Ph.D., učo 60734. Changed: 5/9/2013 15:54.
      More: https://is.muni.cz/publication/923361/en
    2. Boundary Treatment for Young-van Vliet Recursive Zero-Mean Gabor Filtering
      ULMAN, Vladimír. Boundary Treatment for Young-van Vliet Recursive Zero-Mean Gabor Filtering. EURASIP Journal on Advances in Signal Processing. NEW YORK (USA): HINDAWI PUBLISHING CORPORATION, 2011, vol. 2011, ID 234090, p. 1-9. ISSN 1687-6172. Available from: https://dx.doi.org/10.1155/2011/234090.
      doprovodná webová stránka
      Name in Czech: Ošetření okrajových podmínek u Young-Van Vlietových rekurzivních zero-mean Gáborových filtrech
      RIV/00216224:14330/11:00051514 Article in a journal. Informatics. English. United States of America.
      Ulman, Vladimír (203 Czech Republic, guarantor, belonging to the institution)
      Keywords in English: recursive spatial filtering; Gaussian filtering; Gabor filtering; IIR; digital filters
      International impact: yes
      Reviewed: yes
      Changed by: RNDr. Pavel Šmerk, Ph.D., učo 3880. Changed: 20/4/2012 09:37.
      More: https://is.muni.cz/publication/906989/en
    3. Convolution of Large 3D Images on GPU and its Decomposition
      KARAS, Pavel and David SVOBODA. Convolution of Large 3D Images on GPU and its Decomposition. EURASIP Journal on Advances in Signal Processing. NEW YORK (USA): HINDAWI PUBLISHING CORPORATION, 2011, vol. 2011, No 120, p. 1-12. ISSN 1687-6172. Available from: https://dx.doi.org/10.1186/1687-6180-2011-120.
      URL
      Name in Czech: Konvoluce velkých 3D obrazů na GPU a její dekompozice
      RIV/00216224:14330/11:00053127 Article in a journal. Informatics. English. United States of America.
      Karas, Pavel (203 Czech Republic, guarantor, belonging to the institution) -- Svoboda, David (203 Czech Republic, belonging to the institution)
      Keywords in English: convolution; decomposition; fft; gpu; dif; 3D
      International impact: yes
      Reviewed: yes
      Changed by: RNDr. Pavel Karas, Ph.D., učo 106808. Changed: 16/5/2012 13:31.
      More: https://is.muni.cz/publication/950226/en
    4. Efficient Computation of Convolution of Huge Images
      SVOBODA, David. Efficient Computation of Convolution of Huge Images. In Giuseppe Maino; Gian Luca Foresti. Image Analysis and Processing - ICIAP 2011. LNCS 6978, Part I. Berlin, Heidelberg: Springer-Verlag, 2011, p. 453-462. ISBN 978-3-642-24084-3.
      RIV/00216224:14330/11:00052768 Proceedings paper. Use of computers, robotics and its application. English. Italy.
      Svoboda, David (203 Czech Republic, guarantor, belonging to the institution)
      Keywords in English: Convolution; Fast Fourier Transform; Divide-et-Impera
      Type of proceedings: post-proceedings
      International impact: yes
      Reviewed: yes
      Changed by: doc. RNDr. David Svoboda, Ph.D., učo 2824. Changed: 10/8/2016 11:44.
      More: https://is.muni.cz/publication/946653/en
    5. Fast Anisotropic Filtering and Performance Evaluation Tool for Optical Flow in Biomedical Image Analysis
      ULMAN, Vladimír. Fast Anisotropic Filtering and Performance Evaluation Tool for Optical Flow in Biomedical Image Analysis. Brno: Masarykova Univerzita, 2011, 210 pp.
      webové stránky CBIA -- laboratoře, ve které práce vznikla
      Name in Czech: Rychlé anisotropní filtrování a nástroj na měření výkonnosti pro optický tok v~analýze biomedicínského obrazu
      RIV/00216224:14330/11:00052079 Special-purpose publication. Informatics. English. Czech Republic.
      Ulman, Vladimír (203 Czech Republic, guarantor, belonging to the institution)
      Keywords in English: anisotropic spatial filtering optical flow ground-truth optical flow biomedical image processing
      Changed by: RNDr. Vladimír Ulman, Ph.D., učo 4203. Changed: 5/12/2011 11:07.
      More: https://is.muni.cz/publication/933249/en
    6. Fast Tracking Algorithm of GFP-Transfected Living Cells Based on the Chan-Vese Model
      MAŠKA, Martin, Pavel MATULA, Arrate MUÑOZ-BARRUTIA and Carlos ORTIZ-DE-SOLÓRZANO. Fast Tracking Algorithm of GFP-Transfected Living Cells Based on the Chan-Vese Model. 2011.
      Name in Czech: Rychlý algoritmus na sledování pohybu živých buněk transfekovaných pomocí GFP založený na Chan-Vese modelu
      RIV/00216224:14330/11:00051908 Conference abstract. Informatics. English. Germany.
      Maška, Martin (203 Czech Republic, guarantor, belonging to the institution) -- Matula, Pavel (203 Czech Republic, belonging to the institution) -- Muñoz-Barrutia, Arrate (724 Spain) -- Ortiz-de-Solórzano, Carlos (724 Spain)
      Keywords in English: object tracking; Chan-Vese model; level set framework; coherence-enhancing diffusion
      Type of participation: active participation (giving a lecture, organization, etc.)
      International impact: yes
      Reviewed: yes
      Changed by: doc. RNDr. Martin Maška, Ph.D., učo 60734. Changed: 13/4/2011 10:32.
      More: https://is.muni.cz/publication/927289/en
    7. Generation of 3D Digital Phantoms of Colon Tissue
      SVOBODA, David, Ondřej HOMOLA and Stanislav STEJSKAL. Generation of 3D Digital Phantoms of Colon Tissue. In M. Kamel and A. Campilho. Proceedings of 8th International Conference on Image Analysis and Recognition. LNCS 6754, Part II. Berlin, Heidelberg: Springer-Verlag, 2011, p. 31-39. ISBN 978-3-642-21595-7. Available from: https://dx.doi.org/10.1007/978-3-642-21596-4_4.
      RIV/00216224:14330/11:00067276 Proceedings paper. Use of computers, robotics and its application. English. Canada.
      Svoboda, David (203 Czech Republic, guarantor, belonging to the institution) -- Homola, Ondřej (203 Czech Republic, belonging to the institution) -- Stejskal, Stanislav (203 Czech Republic, belonging to the institution)
      Keywords in English: Digital phantom; Colon tissue; Simulation; Haralick texture features
      Type of proceedings: post-proceedings
      International impact: yes
      Reviewed: yes
      Changed by: RNDr. Pavel Šmerk, Ph.D., učo 3880. Changed: 30/4/2014 04:00.
      More: https://is.muni.cz/publication/936280/en
    8. Image Division Technique in Pre-acquisition Analysis of Information Content for Automated Microscopy
      BRÁZDILOVÁ, Silvie Luisa and Michal KOZUBEK. Image Division Technique in Pre-acquisition Analysis of Information Content for Automated Microscopy. Journal of Microscopy. Oxford: Blackwell Science, 2011, vol. 242, No 3, p. 279-289. ISSN 0022-2720. Available from: https://dx.doi.org/10.1111/j.1365-2818.2010.03465.x.
      RIV/00216224:14330/11:00051479 Article in a journal. Use of computers, robotics and its application. English. United Kingdom of Great Britain and Northern Ireland.
      Brázdilová, Silvie Luisa (203 Czech Republic, belonging to the institution) -- Kozubek, Michal (203 Czech Republic, guarantor, belonging to the institution)
      Keywords in English: Automated microscopy; fluorescence microscopy; autofocusing; multimodal content function; image acquisition; information content analysis
      International impact: yes
      Reviewed: yes
      Changed by: prof. RNDr. Michal Kozubek, Ph.D., učo 3740. Changed: 10/3/2018 16:44.
      More: https://is.muni.cz/publication/901497/en
    9. Micro axial tomography: A miniaturized, versatile stage device to overcome resolution anisotropy in fluorescence light microscopy
      STAIER, Florian, Heinz EIPEL, Petr MATULA, Alexei V EVSIKOV, Michal KOZUBEK, Christoph CREMER and Michael HAUSMANN. Micro axial tomography: A miniaturized, versatile stage device to overcome resolution anisotropy in fluorescence light microscopy. Rev. Sci. Instrum. USA: American Institute of Physica, 2011, vol. 82, No 9, p. "093701-1"-"093701-8", 8 pp. ISSN 0034-6748.
      RIV/00216224:14330/11:00053149 Article in a journal. Use of computers, robotics and its application. English. United States of America.
      Staier, Florian (276 Germany) -- Eipel, Heinz (276 Germany) -- Matula, Petr (203 Czech Republic, belonging to the institution) -- Evsikov, Alexei V (643 Russian Federation) -- Kozubek, Michal (203 Czech Republic, guarantor, belonging to the institution) -- Cremer, Christoph (276 Germany) -- Hausmann, Michael (276 Germany)
      Keywords in English: fluorescence; glass fibres; image reconstruction; image resolution; optical microscopes; optical microscopy; optical tomography; stepping motors
      International impact: yes
      Reviewed: yes
      Changed by: doc. RNDr. Petr Matula, Ph.D., učo 3019. Changed: 12/2/2018 15:10.
      More: https://is.muni.cz/publication/950311/en
    10. Multiple myeloma patients at peripheral blood stem cell harvest: restricted usage of TCR beta variable families
      TESAŘOVÁ, Lenka, Irena KRONTORÁD KOUTNÁ, Zdeněk KOŘÍSTEK and Martin KLABUSAY. Multiple myeloma patients at peripheral blood stem cell harvest: restricted usage of TCR beta variable families. Clinical Immunology. Elsevier, 2011, vol. 138, No 1, p. 67-76. ISSN 1521-6616. Available from: https://dx.doi.org/10.1016/j.clim.2010.09.007.
      Name in Czech: Pacienti s mnohočetným myelomem v okamžiku sběru kmenových buněk z periferní krve: omezené využití TCR beta variabilních rodin
      RIV/00216224:14330/11:00051519 Article in a journal. Genetics and molecular biology. English. United States of America.
      Tesařová, Lenka (203 Czech Republic, belonging to the institution) -- Krontorád Koutná, Irena (203 Czech Republic, guarantor, belonging to the institution) -- Kořístek, Zdeněk (203 Czech Republic, belonging to the institution) -- Klabusay, Martin (203 Czech Republic, belonging to the institution)
      Keywords in English: T-cell receptor; Beta variable families; Multiple myeloma; Reverse transcription polymerase chain reaction; Capillary electrophoresis
      International impact: yes
      Reviewed: yes
      Changed by: Mgr. Lenka Tesařová, Ph.D., učo 78340. Changed: 2/3/2018 10:14.
      More: https://is.muni.cz/publication/907729/en
    11. Proliferation and differentiation potential of CD133+ and CD34+ populations from the bone marrow and mobilized peripheral blood
      KRONTORÁD KOUTNÁ, Irena, Martina PETERKOVÁ, Pavel ŠIMARA, Stanislav STEJSKAL, Lenka TESAŘOVÁ and Michal KOZUBEK. Proliferation and differentiation potential of CD133+ and CD34+ populations from the bone marrow and mobilized peripheral blood. Annals of hematology. Germany: Springer, 2011, vol. 90, (2), p. 127-137. ISSN 0939-5555.
      Name in Czech: Proliferační a diferenciační potenciál CD133+ a CD34+ buněčných populací kostní dřeně a periferní mobilizované krve
      RIV/00216224:14330/11:00051523 Article in a journal. Oncology and haematology. English. Germany.
      Krontorád Koutná, Irena (203 Czech Republic, guarantor, belonging to the institution) -- Peterková, Martina (203 Czech Republic, belonging to the institution) -- Šimara, Pavel (203 Czech Republic, belonging to the institution) -- Stejskal, Stanislav (203 Czech Republic, belonging to the institution) -- Tesařová, Lenka (203 Czech Republic, belonging to the institution) -- Kozubek, Michal (203 Czech Republic, belonging to the institution)
      Keywords in English: CD34; CD133; HSC; transplantation; VEGFR
      International impact: yes
      Reviewed: yes
      Changed by: doc. RNDr. Irena Koutná, Ph.D., učo 18705. Changed: 13/4/2011 12:53.
      More: https://is.muni.cz/publication/907888/en
    12. The MEK inhibitor PD184352 enhances BMS-214662-induced apoptosis in CD34+ CML stem/progenitor cells
      PELLICANO, Francesca, Pavel ŠIMARA, Amy SINCLAIR, Gudmundur Vignir HELGASON, Mhairi COPLAND, Steven GRANT and Tessa HOLYOAKE. The MEK inhibitor PD184352 enhances BMS-214662-induced apoptosis in CD34+ CML stem/progenitor cells. Leukemia. London: Nature Publishing Group, 2011, vol. 25, No 7, p. 1159-1167. ISSN 0887-6924. Available from: https://dx.doi.org/10.1038/leu.2011.67.
      URL
      RIV/00216224:14330/11:00067303 Article in a journal. Oncology and haematology. English. United Kingdom of Great Britain and Northern Ireland.
      Pellicano, Francesca (380 Italy) -- Šimara, Pavel (203 Czech Republic, guarantor, belonging to the institution) -- Sinclair, Amy (826 United Kingdom of Great Britain and Northern Ireland) -- Helgason, Gudmundur Vignir (826 United Kingdom of Great Britain and Northern Ireland) -- Copland, Mhairi (826 United Kingdom of Great Britain and Northern Ireland) -- Grant, Steven (826 United Kingdom of Great Britain and Northern Ireland) -- Holyoake, Tessa (826 United Kingdom of Great Britain and Northern Ireland)
      Keywords in English: CML; BMS-214662; MEK inhibitor; PD184352; HSC; TKI
      International impact: yes
      Changed by: Mgr. Pavel Šimara, Ph.D., učo 67594. Changed: 2/3/2018 10:21.
      More: https://is.muni.cz/publication/949250/en
    13. Tool for Generation of Synthetic Image Datasets for Time-Lapse Fluorescence Microscopy
      ULMAN, Vladimír and David SVOBODA. Tool for Generation of Synthetic Image Datasets for Time-Lapse Fluorescence Microscopy. In 11th European Light Microscopy Initiative (ELMI) meeting. 2011.
      Odkaz na prezentovaný nástroj.
      Name in Czech: Nástroj pro generování umělých obrazových souborů z oblasti fluoroscenční mikroskopie
      RIV/00216224:14330/11:00052527 Conference abstract. Informatics. English. Greece.
      Ulman, Vladimír (203 Czech Republic, guarantor, belonging to the institution) -- Svoboda, David (203 Czech Republic, belonging to the institution)
      Keywords in English: Simulation Optical Flow 3D Image Sequences Fluorescence Optical Microscopy
      Type of participation: active participation (giving a lecture, organization, etc.)
      International impact: yes
      Reviewed: yes
      Changed by: RNDr. Vladimír Ulman, Ph.D., učo 4203. Changed: 13/6/2012 08:14.
      More: https://is.muni.cz/publication/942757/en

    2010

    1. A Fast Level Set-Like Algorithm for Region-Based Active Contours
      MAŠKA, Martin, Pavel MATULA, Ondřej DANĚK and Michal KOZUBEK. A Fast Level Set-Like Algorithm for Region-Based Active Contours. Online. In 6th International Symposium on Visual Computing. Berlin, Heidelberg: Springer-Verlag, 2010, p. 387-396. ISBN 978-3-642-17276-2. Available from: https://dx.doi.org/10.1007/978-3-642-17277-9_40.
      URL
      Name in Czech: Rychlý Level Set algoritmus pro aktivní kontury založené na regionech
      RIV/00216224:14330/10:00067193 Proceedings paper. Informatics. English. Germany.
      Maška, Martin (203 Czech Republic, guarantor, belonging to the institution) -- Matula, Pavel (203 Czech Republic, belonging to the institution) -- Daněk, Ondřej (203 Czech Republic, belonging to the institution) -- Kozubek, Michal (203 Czech Republic, belonging to the institution)
      Keywords in English: implicit active contours; Chan-Vese model; fast level set-like algorithm
      Type of proceedings: post-proceedings
      International impact: yes
      Reviewed: yes
      Changed by: doc. RNDr. Martin Maška, Ph.D., učo 60734. Changed: 13/12/2015 02:07.
      More: https://is.muni.cz/publication/891650/en
    2. A Simple Topology Preserving Max-Flow Algorithm for Graph Cut Based Image Segmentation
      DANĚK, Ondřej and Martin MAŠKA. A Simple Topology Preserving Max-Flow Algorithm for Graph Cut Based Image Segmentation. In 6th Doctoral Workshop on Mathematical and Engineering Methods in Computer Science. Brno: NOVPRESS, 2010, p. 45-52. ISBN 978-80-87342-10-7.
      Name in Czech: Jednoduchý topologii zachovávající algoritmus pro segmentaci obrazu pomocí grafových řezů
      RIV/00216224:14330/10:00044732 Proceedings paper. Informatics. English. Czech Republic.
      Daněk, Ondřej (203 Czech Republic, guarantor, belonging to the institution) -- Maška, Martin (203 Czech Republic, belonging to the institution)
      Keywords in English: maximum flow algorithm; topology preserving; image segmentation; graph cuts
      Type of proceedings: post-proceedings
      International impact: yes
      Reviewed: yes
      Changed by: doc. RNDr. Martin Maška, Ph.D., učo 60734. Changed: 13/12/2015 02:07.
      More: https://is.muni.cz/publication/897337/en
    3. Application of reverse transcription PCR and capillary electrophoresis in the analysis of T-cell receptor beta variable repertoire
      TESAŘOVÁ, Lenka, Martina PETERKOVÁ, Stanislav STEJSKAL, Michaela POTĚŠILOVÁ and Irena KRONTORÁD KOUTNÁ. Application of reverse transcription PCR and capillary electrophoresis in the analysis of T-cell receptor beta variable repertoire. In Advances in Molecular and Cancer Biology, 2010. Brno, Česká republika: muni PRESS, 2010, p. 46-51. ISBN 978-80-210-5312-0.
      Name in Czech: Aplikace RT-PCR a kapilární elektroforézy při analýze TCR beta variabilního repertoáru
      RIV/00216224:14330/10:00045361 Proceedings paper. Genetics and molecular biology. English. Czech Republic.
      Tesařová, Lenka (203 Czech Republic, belonging to the institution) -- Peterková, Martina (203 Czech Republic, belonging to the institution) -- Stejskal, Stanislav (203 Czech Republic, belonging to the institution) -- Potěšilová, Michaela (203 Czech Republic, belonging to the institution) -- Krontorád Koutná, Irena (203 Czech Republic, guarantor, belonging to the institution)
      Keywords in English: Reverse transcription polymerase chain reaction; Capillary electrophoresis; T-cell receptor; Beta variable families
      Type of proceedings: pre-proceedings
      Reviewed: yes
      Changed by: Mgr. Lenka Tesařová, Ph.D., učo 78340. Changed: 8/4/2014 07:50.
      More: https://is.muni.cz/publication/907739/en
    4. Dexamethasone and Insulin Affecting SFTPA1 and SFTPA2 mRNA Levels
      RUČKA, Zdeněk, Lenka TESAŘOVÁ, Michaela POTĚŠILOVÁ, Stanislav STEJSKAL, Irena KRONTORÁD KOUTNÁ, Petr VAŇHARA and Jan DOLEŽEL. Dexamethasone and Insulin Affecting SFTPA1 and SFTPA2 mRNA Levels. In Advances in Molecular and Cancer Biology, 2010. Brno, Česká republika: muni PRESS, 2010, p. 36-38. ISBN 978-80-210-5312-0.
      RIV/00216224:14330/10:00045383 Proceedings paper. Genetics and molecular biology. English. Czech Republic.
      Ručka, Zdeněk (203 Czech Republic, belonging to the institution) -- Tesařová, Lenka (203 Czech Republic, belonging to the institution) -- Potěšilová, Michaela (203 Czech Republic, belonging to the institution) -- Stejskal, Stanislav (203 Czech Republic, belonging to the institution) -- Krontorád Koutná, Irena (203 Czech Republic, guarantor, belonging to the institution) -- Vaňhara, Petr (203 Czech Republic, belonging to the institution) -- Doležel, Jan (203 Czech Republic, belonging to the institution)
      Keywords in English: Lung surfactant; Insulin; Dexamethasone
      Type of proceedings: pre-proceedings
      Reviewed: yes
      Changed by: Mgr. Lenka Tesařová, Ph.D., učo 78340. Changed: 31/10/2011 09:02.
      More: https://is.muni.cz/publication/907864/en
    5. Filtering with Anisotropic 3D Gabor Filter Bank Efficiently Computed with 1D Convolutions without Interpolation
      ULMAN, Vladimír. Filtering with Anisotropic 3D Gabor Filter Bank Efficiently Computed with 1D Convolutions without Interpolation. In Proceedings of the Seventh IASTED International Conference on Signal Processing, Pattern Recognition and Applications. Calgary: ACTA Press, 2010, p. 33-42. ISBN 978-0-88986-823-6.
      související webová prezentace
      Name in Czech: Filtrování bankou anisotropních 3D~Gáborových filtrů pomocí 1D~konvolucí bez interpolací
      RIV/00216224:14330/10:00042890 Proceedings paper. Informatics. English. Canada.
      Ulman, Vladimír (203 Czech Republic, guarantor, belonging to the institution)
      Keywords in English: Gabor filtering bank filtering filter design
      Type of proceedings: post-proceedings
      International impact: yes
      Reviewed: yes
      Changed by: RNDr. Vladimír Ulman, Ph.D., učo 4203. Changed: 8/4/2013 10:32.
      More: https://is.muni.cz/publication/855575/en
    6. Improving Accuracy of Optical Flow of Heeger's Original Method on Biomedical Images
      ULMAN, Vladimír. Improving Accuracy of Optical Flow of Heeger's Original Method on Biomedical Images. In Proceedings of the 7th International Conference on Image Analysis and Recognition, ICIAR 2010. Povoa de Varzim (Portugal): Springer, 2010, p. 263-273. ISBN 978-3-642-13771-6. Available from: https://dx.doi.org/10.1007/978-3-642-13772-3_27.
      URL
      Name in Czech: Vylepšení přesnosti optického toku na základě původní Heegerovy metody na biomedicínských obrazech
      RIV/00216224:14330/10:00067184 Proceedings paper. Informatics. English. Germany.
      Ulman, Vladimír (203 Czech Republic, guarantor, belonging to the institution)
      Keywords in English: energy-based optical flow image processing
      Type of proceedings: post-proceedings
      International impact: yes
      Reviewed: yes
      Changed by: RNDr. Pavel Šmerk, Ph.D., učo 3880. Changed: 30/4/2014 04:27.
      More: https://is.muni.cz/publication/885864/en
    7. Simultaneous Tracking of Multiple Objects Using Fast Level Set-Like Algorithm
      MAŠKA, Martin, Pavel MATULA and Michal KOZUBEK. Simultaneous Tracking of Multiple Objects Using Fast Level Set-Like Algorithm. In 6th Doctoral Workshop on Mathematical and Engineering Methods in Computer Science. Brno: NOVPRESS, 2010, p. 117-125. ISBN 978-80-87342-10-7.
      Name in Czech: Souběžné sledování pohybu více objektů pomocí rychlého Level Set algoritmu
      RIV/00216224:14330/10:00044731 Proceedings paper. Informatics. English. Czech Republic.
      Maška, Martin (203 Czech Republic, guarantor, belonging to the institution) -- Matula, Pavel (203 Czech Republic, belonging to the institution) -- Kozubek, Michal (203 Czech Republic, belonging to the institution)
      Keywords in English: level set framework; topology preservation; object tracking; contour evolution
      Type of proceedings: post-proceedings
      International impact: yes
      Reviewed: yes
      Changed by: doc. RNDr. Martin Maška, Ph.D., učo 60734. Changed: 13/12/2015 02:07.
      More: https://is.muni.cz/publication/897313/en
    8. The role of chromatin condensation during granulopoiesis in the regulation of gene cluster expression
      STEJSKAL, Stanislav, Irena KRONTORÁD KOUTNÁ, Pavel MATULA, Zdeněk RUČKA, Ondřej DANĚK, Martin MAŠKA and Michal KOZUBEK. The role of chromatin condensation during granulopoiesis in the regulation of gene cluster expression. Epigenetics. USA: Landes Bioscience, 2010, vol. 5, No 8, p. 759-767. ISSN 1559-2294. Available from: https://dx.doi.org/10.4161/epi.5.8.13183.
      URL
      Name in Czech: Role chromatinové kondenzace v regulaci genových lokusů během granulopoézy
      RIV/00216224:14330/10:00044622 Article in a journal. Genetics and molecular biology. English. United States of America.
      Stejskal, Stanislav (203 Czech Republic, belonging to the institution) -- Krontorád Koutná, Irena (203 Czech Republic, guarantor, belonging to the institution) -- Matula, Pavel (203 Czech Republic, belonging to the institution) -- Ručka, Zdeněk (203 Czech Republic, belonging to the institution) -- Daněk, Ondřej (203 Czech Republic, belonging to the institution) -- Maška, Martin (203 Czech Republic, belonging to the institution) -- Kozubek, Michal (203 Czech Republic, belonging to the institution)
      Keywords in English: Granulocytes; Immunohistochemistry; RNA polymerase II; Image analysis; Cell differentiation
      International impact: yes
      Reviewed: yes
      Changed by: doc. RNDr. Pavel Matula, Ph.D., učo 2927. Changed: 13/4/2012 00:35.
      More: https://is.muni.cz/publication/895719/en
    9. Time lapse living cells microscopy for studying CML: Preparation of Abl1- and Bcr/Abl - fluorescent protein vectors using Gateway technology
      POTĚŠILOVÁ, Michaela, Miroslav VAŘECHA, Lenka TESAŘOVÁ and Irena KRONTORÁD KOUTNÁ. Time lapse living cells microscopy for studying CML: Preparation of Abl1- and Bcr/Abl - fluorescent protein vectors using Gateway technology. In Advances in Molecular and Cancer Biology, 2010. Brno: muni PRESS, 2010, p. 31-35. ISBN 978-80-210-5312-0.
      RIV/00216224:14330/10:00045378 Proceedings paper. Genetics and molecular biology. English. Czech Republic.
      Potěšilová, Michaela (203 Czech Republic) -- Vařecha, Miroslav (203 Czech Republic) -- Tesařová, Lenka (203 Czech Republic) -- Krontorád Koutná, Irena (203 Czech Republic, guarantor)
      Keywords in English: Gateway cloning ABL1 BCR/ABL expression vectors
      Type of proceedings: pre-proceedings
      Reviewed: yes
      Changed by: Mgr. Michaela Potěšilová, učo 106117. Changed: 16/11/2010 14:34.
      More: https://is.muni.cz/publication/907855/en

    2009

    1. A Fast Level Set-Like Algorithm with Topology Preserving Constraint
      MAŠKA, Martin and Pavel MATULA. A Fast Level Set-Like Algorithm with Topology Preserving Constraint. Online. In 13th International Conference on Computer Analysis of Images and Patterns. Berlin, Heidelberg: Springer-Verlag, 2009, p. 930-938. ISBN 978-3-642-03766-5. Available from: https://dx.doi.org/10.1007/978-3-642-03767-2_113.
      URL
      Name in Czech: Rychlý Level Set algoritmus zachovávající topologii rozhraní
      RIV/00216224:14330/09:00067104 Proceedings paper. Informatics. English. Germany.
      Maška, Martin (203 Czech Republic, guarantor, belonging to the institution) -- Matula, Pavel (203 Czech Republic, belonging to the institution)
      Keywords in English: level set framework; topology preservation; contour evolution; image segmentation
      Type of proceedings: post-proceedings
      International impact: yes
      Reviewed: yes
      Changed by: doc. RNDr. Martin Maška, Ph.D., učo 60734. Changed: 13/12/2015 02:07.
      More: https://is.muni.cz/publication/794793/en
    2. A Two-Phase Segmentation of Cell Nuclei Using Fast Level Set-Like Algorithms
      MAŠKA, Martin, Ondřej DANĚK, Carlos ORTIZ-DE-SOLÓRZANO, Arrate MUÑOZ-BARRUTIA, Michal KOZUBEK and Ignacio FERNÁNDEZ GARCÍA. A Two-Phase Segmentation of Cell Nuclei Using Fast Level Set-Like Algorithms. Online. In 16th Scandinavian Conference on Image Analysis. Berlin, Heidelberg: Springer-Verlag, 2009, p. 390-399. ISBN 978-3-642-02229-6. Available from: https://dx.doi.org/10.1007/978-3-642-02230-2_40.
      URL
      Name in Czech: Dvoukroková segmentace buněčných jader pomocí rychlých Level Set algoritmů
      RIV/00216224:14330/09:00067108 Proceedings paper. Informatics. English. Germany.
      Maška, Martin (203 Czech Republic, guarantor, belonging to the institution) -- Daněk, Ondřej (203 Czech Republic, belonging to the institution) -- Ortiz-de-Solórzano, Carlos (724 Spain) -- Muñoz-Barrutia, Arrate (724 Spain) -- Kozubek, Michal (203 Czech Republic, belonging to the institution) -- Fernández García, Ignacio (724 Spain)
      Keywords in English: nucleus segmentation; touching nuclei; level set framework; contour evolution; topology preservation
      Type of proceedings: post-proceedings
      International impact: yes
      Reviewed: yes
      Changed by: doc. RNDr. Martin Maška, Ph.D., učo 60734. Changed: 13/12/2015 02:07.
      More: https://is.muni.cz/publication/799428/en
    3. Acquiarium: Free Software for the Acquisition and Analysis of 3D Images of Cells in Fluorescence Microscopy
      MATULA, Pavel, Martin MAŠKA, Ondřej DANĚK, Petr MATULA and Michal KOZUBEK. Acquiarium: Free Software for the Acquisition and Analysis of 3D Images of Cells in Fluorescence Microscopy. Online. In IEEE International Symposium on Biomedical Imaging. Boston: IEEE, 2009, p. 1138-1141. ISBN 978-1-4244-3932-4.
      URL
      Name in Czech: Acquiarium: Volný software na snímání a analýzy 3D obrazů buněk ve fluorescenční mikroskopii
      RIV/00216224:14330/09:00035583 Proceedings paper. Computer hardware and software. English. United States of America.
      Matula, Pavel (203 Czech Republic, guarantor, belonging to the institution) -- Maška, Martin (203 Czech Republic, belonging to the institution) -- Daněk, Ondřej (203 Czech Republic, belonging to the institution) -- Matula, Petr (203 Czech Republic, belonging to the institution) -- Kozubek, Michal (203 Czech Republic, belonging to the institution)
      Keywords in English: free software; fluorescence microscopy; image acqusition; 3D image analysis; image cytometry
      Type of proceedings: post-proceedings
      International impact: yes
      Reviewed: yes
      Changed by: doc. RNDr. Martin Maška, Ph.D., učo 60734. Changed: 13/12/2015 02:07.
      More: https://is.muni.cz/publication/833229/en
    4. Combination of mRNA and protein microarray analysis in complex cell profiling
      ŠIMARA, Pavel, Irena KOUTNÁ, Stanislav STEJSKAL, Petr KRONTORÁD, Zdeněk RUČKA, Martina PETERKOVÁ and Michal KOZUBEK. Combination of mRNA and protein microarray analysis in complex cell profiling. Neoplasma. Bratislava, Slovensko: AEPress, s.r.o., 2009, 2/2009, No 56, p. 141-149. ISSN 0028-2685.
      Odborný vědecký článek
      Name in Czech: Kombinace mRNA a proteinové microarray analýzy v komplexním profilování buněk
      Name (in English): Combination of mRNA and protein microarray analysis in complex cell profiling
      RIV/00216224:14330/09:00034277 Article in a journal. Genetics and molecular biology. English. Czech Republic.
      Šimara, Pavel (203 Czech Republic, belonging to the institution) -- Koutná, Irena (203 Czech Republic, guarantor, belonging to the institution) -- Stejskal, Stanislav (203 Czech Republic, belonging to the institution) -- Krontorád, Petr (203 Czech Republic, belonging to the institution) -- Ručka, Zdeněk (203 Czech Republic, belonging to the institution) -- Peterková, Martina (203 Czech Republic, belonging to the institution) -- Kozubek, Michal (203 Czech Republic, belonging to the institution)
      Keywords in English: microarray; cell profiling; protein expression; mRNA expression; HL-60
      International impact: yes
      Reviewed: yes
      Changed by: Mgr. Pavel Šimara, Ph.D., učo 67594. Changed: 2/3/2018 09:49.
      More: https://is.muni.cz/publication/798695/en
    5. Generation of Digital Phantoms of Cell Nuclei and Simulation of Image Formation in 3D Image Cytometry
      SVOBODA, David, Michal KOZUBEK and Stanislav STEJSKAL. Generation of Digital Phantoms of Cell Nuclei and Simulation of Image Formation in 3D Image Cytometry. Cytometry Part A. John Wiley & Sons, Inc., 2009, 75A, No 6, p. 494-509. ISSN 1552-4922. Available from: https://dx.doi.org/10.1002/cyto.a.20714.
      Name in Czech: Generování digitálních fantomů buněčných jader a simulace tvorby obrazu v 3D obrazové cytometrii
      RIV/00216224:14330/09:00034932 Article in a journal. Use of computers, robotics and its application. English. United States of America.
      Svoboda, David (203 Czech Republic, guarantor, belonging to the institution) -- Kozubek, Michal (203 Czech Republic, belonging to the institution) -- Stejskal, Stanislav (203 Czech Republic, belonging to the institution)
      Keywords in English: digital phantom; synthetic image; procedural texture; point spread function; fluorescence optical microscope; 3D image cytometry
      International impact: yes
      Reviewed: yes
      Changed by: prof. RNDr. Michal Kozubek, Ph.D., učo 3740. Changed: 19/12/2016 17:46.
      More: https://is.muni.cz/publication/818483/en
    6. Information Content Analysis in Automated Microscopy Imaging using an Adaptive Autofocus Algorithm for Multimodal Functions
      BRÁZDILOVÁ, Silvie Luisa and Michal KOZUBEK. Information Content Analysis in Automated Microscopy Imaging using an Adaptive Autofocus Algorithm for Multimodal Functions. Journal of Microscopy. Oxford: Blackwell Science, 2009, vol. 236, No 3, p. 194-202. ISSN 0022-2720. Available from: https://dx.doi.org/10.1111/j.1365-2818.2009.03280.x.
      Name in Czech: Analýza informačního obsahu v automatizované mikroskopii pomocí adaptivního samozaostřovacího algoritmu pro multimodální fuknce
      RIV/00216224:14330/09:00035554 Article in a journal. Use of computers, robotics and its application. English. United Kingdom of Great Britain and Northern Ireland.
      Brázdilová, Silvie Luisa (203 Czech Republic, belonging to the institution) -- Kozubek, Michal (203 Czech Republic, guarantor, belonging to the institution)
      Keywords in English: automated microscopy; information content analysis; autofocusing; normalized variance
      International impact: yes
      Reviewed: yes
      Changed by: prof. RNDr. Michal Kozubek, Ph.D., učo 3740. Changed: 10/3/2018 16:43.
      More: https://is.muni.cz/publication/832398/en
    7. Insulin Decreases Transcription of Three Proteins Associated with Lung Surfactant
      RUČKA, Zdeněk, Petr VAŇHARA, Lenka TESAŘOVÁ, Michaela POTĚŠILOVÁ, Stanislav STEJSKAL, Jan DOLEŽEL and Irena KOUTNÁ. Insulin Decreases Transcription of Three Proteins Associated with Lung Surfactant. 2009th ed. Posters@Technologynetworks.net, 2009. The Online Journal of Scientific Posters.
      URL
      Name in Czech: Inzulín snižuje transkripci třech proteinů asociovaných s plicním surfaktantem
      Name (in English): Insulin Decreases Transcription of Three Proteins Associated with Lung Surfactant
      RIV/00216224:14330/09:00036671 Audiovisual works. Genetics and molecular biology. English. Germany.
      Ručka, Zdeněk (203 Czech Republic, belonging to the institution) -- Vaňhara, Petr (203 Czech Republic, belonging to the institution) -- Tesařová, Lenka (203 Czech Republic, belonging to the institution) -- Potěšilová, Michaela (203 Czech Republic, belonging to the institution) -- Stejskal, Stanislav (203 Czech Republic, belonging to the institution) -- Doležel, Jan (203 Czech Republic) -- Koutná, Irena (203 Czech Republic, guarantor, belonging to the institution)
      Keywords in English: insulin surfactant PCR
      Changed by: Mgr. Lenka Tesařová, Ph.D., učo 78340. Changed: 31/10/2011 09:04.
      More: https://is.muni.cz/publication/846823/en
    8. Microarray analysis using limited amount of cells
      PETERKOVÁ, Martina, Irena KOUTNÁ, Lenka TESAŘOVÁ, Michaela POTĚŠILOVÁ, Michal KOZUBEK, Viera HRABČÁKOVÁ, Martin KLABUSAY, Michael DOUBEK and Jiří MAYER. Microarray analysis using limited amount of cells. Folia Biologica (Praha). 2009, vol. 2009, No 55, p. 53-60. ISSN 0015-5500.
      Name in Czech: Microarray analýza u limitujícího množství buněk
      RIV/00216224:14330/09:00034548 Article in a journal. Genetics and molecular biology. English. Czech Republic.
      Peterková, Martina (203 Czech Republic) -- Koutná, Irena (203 Czech Republic, guarantor) -- Tesařová, Lenka (203 Czech Republic) -- Potěšilová, Michaela (203 Czech Republic) -- Kozubek, Michal (203 Czech Republic) -- Hrabčáková, Viera (203 Czech Republic) -- Klabusay, Martin (203 Czech Republic) -- Doubek, Michael (203 Czech Republic) -- Mayer, Jiří (203 Czech Republic)
      Keywords in English: cDNA microarray; RNA isolation; RNA amplifiacation; CD34+ cells
      International impact: yes
      Reviewed: yes
      Changed by: prof. RNDr. Michal Kozubek, Ph.D., učo 3740. Changed: 7/5/2010 08:48.
      More: https://is.muni.cz/publication/808351/en
    9. Prediction of localization and interactions of apoptotic proteins
      VAŘECHA, Miroslav, Michal ZIMMERMANN, Jana AMRICHOVÁ, Vladimír ULMAN, Pavel MATULA and Michal KOZUBEK. Prediction of localization and interactions of apoptotic proteins. Journal of Biomedical Science. BioMed website: BioMed Central, London, England, 2009, vol. 16, No 59, p. 1-14. ISSN 1021-7770.
      Name in Czech: Predikce lokalizace a interakcí apoptotických proteinů
      RIV/00216224:14330/09:00029126 Article in a journal. Genetics and molecular biology. English. United Kingdom of Great Britain and Northern Ireland.
      Vařecha, Miroslav (203 Czech Republic, guarantor, belonging to the institution) -- Zimmermann, Michal (203 Czech Republic, belonging to the institution) -- Amrichová, Jana (203 Czech Republic) -- Ulman, Vladimír (203 Czech Republic, belonging to the institution) -- Matula, Pavel (203 Czech Republic, belonging to the institution) -- Kozubek, Michal (203 Czech Republic, belonging to the institution)
      Keywords in English: AIF;apoptosis-inducing factor;AMID;AIF-homologous mitochondrion-associated inducer of death;endonuclease G;heat shock protein;DNA topoisomerase II;CPS-6;CED-3 protease suppressor;WAH-1
      International impact: yes
      Reviewed: yes
      Changed by: RNDr. Vladimír Ulman, Ph.D., učo 4203. Changed: 7/1/2012 18:16.
      More: https://is.muni.cz/publication/795881/en
    10. Representation of T-cell receptor V beta families detected by reverse transcription PCR and capillary electrophoresis
      TESAŘOVÁ, Lenka, Irena KOUTNÁ, Martina PETERKOVÁ, Michaela POTĚŠILOVÁ, Magdaléna DVOŘÁKOVÁ and Stanislav STEJSKAL. Representation of T-cell receptor V beta families detected by reverse transcription PCR and capillary electrophoresis. In Experimental Hematology, Volume 37, Number 9. University of Nevada, USA: Elsevier, 2009, p. 72. ISSN 0301-472X.
      Name in Czech: Zastoupení V beta rodin T-buněčného receptoru detekované pomocí zpětné PCR a kapilární elektroforézy
      RIV/00216224:14330/09:00036623 Proceedings paper. Genetics and molecular biology. English. United States of America.
      Tesařová, Lenka (203 Czech Republic) -- Koutná, Irena (203 Czech Republic, guarantor) -- Peterková, Martina (203 Czech Republic) -- Potěšilová, Michaela (203 Czech Republic) -- Dvořáková, Magdaléna (203 Czech Republic) -- Stejskal, Stanislav (203 Czech Republic)
      Keywords in English: T cells - V beta gene families - reverse transcription PCR - capillary electrophoresis
      International impact: yes
      Reviewed: yes
      Changed by: Mgr. Lenka Tesařová, Ph.D., učo 78340. Changed: 16/9/2009 15:08.
      More: https://is.muni.cz/publication/845818/en
    11. Segmentation of Touching Cell Nuclei using a Two-Stage Graph Cut Model
      DANĚK, Ondřej, Pavel MATULA, Carlos ORTIZ-DE-SOLÓRZANO, Arrate MUÑOZ-BARRUTIA, Martin MAŠKA and Michal KOZUBEK. Segmentation of Touching Cell Nuclei using a Two-Stage Graph Cut Model. In 16th Scandinavian Conference on Image Analysis. Berlin, Heidelberg: Springer-Verlag, 2009, p. 410-419. ISBN 978-3-642-02229-6. Available from: https://dx.doi.org/10.1007/978-3-642-02230-2_42.
      URL
      Name in Czech: Segmentace dotýkajících se buněčných jader pomocí dvou fázové metody založené na hledání minimálního řezu v grafu
      RIV/00216224:14330/09:00067107 Proceedings paper. Informatics. English. Germany.
      Daněk, Ondřej (203 Czech Republic, guarantor, belonging to the institution) -- Matula, Pavel (203 Czech Republic, belonging to the institution) -- Ortiz-de-Solórzano, Carlos (724 Spain) -- Muñoz-Barrutia, Arrate (724 Spain) -- Maška, Martin (203 Czech Republic, belonging to the institution) -- Kozubek, Michal (203 Czech Republic, belonging to the institution)
      Keywords in English: image segmentation; cell nuclei cluster separation; graph cuts; energy minimization
      Type of proceedings: post-proceedings
      International impact: yes
      Reviewed: yes
      Changed by: doc. RNDr. Martin Maška, Ph.D., učo 60734. Changed: 13/12/2015 02:07.
      More: https://is.muni.cz/publication/798739/en
    12. The in vitro proliferation potential and proportion of CD133+ versus CD34+ hematopoietic stem cells
      PETERKOVÁ, Martina, Irena KOUTNÁ, Pavel ŠIMARA, Stanislav STEJSKAL and Lenka TESAŘOVÁ. The in vitro proliferation potential and proportion of CD133+ versus CD34+ hematopoietic stem cells. In Experimental Hematology, Volume 37, Number 9. University of Nevada, USA: Elsevier, 2009, p. 35-36. ISSN 0301-472X.
      Name in Czech: In vitro proliferační potenciál CD133+ versus CD34+ hematopoetických kmenových buněk
      RIV/00216224:14330/09:00036621 Proceedings paper. Genetics and molecular biology. English. United States of America.
      Peterková, Martina (203 Czech Republic, belonging to the institution) -- Koutná, Irena (203 Czech Republic, guarantor, belonging to the institution) -- Šimara, Pavel (203 Czech Republic, belonging to the institution) -- Stejskal, Stanislav (203 Czech Republic, belonging to the institution) -- Tesařová, Lenka (203 Czech Republic, belonging to the institution)
      Keywords in English: CD133 positive - CD34 positive - HSC
      International impact: yes
      Reviewed: yes
      Changed by: Mgr. Pavel Šimara, Ph.D., učo 67594. Changed: 2/3/2018 10:25.
      More: https://is.muni.cz/publication/845799/en

    2008

    1. Arbitrarily-Oriented Anisotropic 3D Gaussian Filtering Computed with 1D Convolutions without Interpolation
      ULMAN, Vladimír. Arbitrarily-Oriented Anisotropic 3D Gaussian Filtering Computed with 1D Convolutions without Interpolation. In Proceedings of 8th WSEAS International Conference on Signal Processing, Computational Geometry and Artificial Vision. Ateny: WSEAS, 2008, p. 56-62. ISBN 978-960-6766-95-4.
      Name in Czech: Obecně orientované anisotropní 3D Gausovské fitrování počítáno pomocí 1D konvolucí bez interpolací
      RIV/00216224:14330/08:00026077 Proceedings paper. Informatics. English. Greece.
      Ulman, Vladimír (203 Czech Republic, guarantor)
      Keywords in English: Gaussian separability spatial image filtering
      Type of proceedings: post-proceedings
      International impact: yes
      Reviewed: yes
      Changed by: RNDr. Vladimír Ulman, Ph.D., učo 4203. Changed: 12/6/2009 08:30.
      More: https://is.muni.cz/publication/769189/en
    2. cDNA Microarray: Gene Expression Profiling of Small Cell Populations
      PETERKOVÁ, Martina, Irena KOUTNÁ, Lenka TESAŘOVÁ, Michaela POTĚŠILOVÁ, Zdeněk RUČKA, Viera HRABČÁKOVÁ and Martin KLABUSAY. cDNA Microarray: Gene Expression Profiling of Small Cell Populations. 2008.
      Name in Czech: cDNA Microarray: Expresní profilování malých buněčných pupulací
      RIV/00216224:14330/08:00027029 Conference abstract. Genetics and molecular biology. English. Austria.
      Peterková, Martina (203 Czech Republic) -- Koutná, Irena (203 Czech Republic, guarantor) -- Tesařová, Lenka (203 Czech Republic) -- Potěšilová, Michaela (203 Czech Republic) -- Ručka, Zdeněk (203 Czech Republic) -- Hrabčáková, Viera (703 Slovakia) -- Klabusay, Martin (203 Czech Republic)
      Keywords in English: cDNA microarray; RNA isolation; RNA amplifiacation; CD34+ cells
      Type of participation: active participation (giving a lecture, organization, etc.)
      International impact: yes
      Changed by: Mgr. Martina Peterková, učo 63637. Changed: 18/12/2008 13:42.
      More: https://is.muni.cz/publication/799913/en

    2007

    1. A Comparison of Fast Level Set-Like Algorithms for Image Segmentation in Fluorescence Microscopy
      MAŠKA, Martin, Jan HUBENÝ, David SVOBODA and Michal KOZUBEK. A Comparison of Fast Level Set-Like Algorithms for Image Segmentation in Fluorescence Microscopy. Online. In 3rd International Symposium on Visual Computing. Berlin, Heidelberg: Spinger-Verlag, 2007, p. 571-581. ISBN 978-3-540-76855-5.
      URL
      Name in Czech: Porovnání rychlých aproximací Level Set metody pro segmentaci obrazu ve fluorescenční mikroskopii
      RIV/00216224:14330/07:00022769 Proceedings paper. Informatics. English. Germany.
      Maška, Martin (203 Czech Republic, guarantor, belonging to the institution) -- Hubený, Jan (203 Czech Republic, belonging to the institution) -- Svoboda, David (203 Czech Republic, belonging to the institution) -- Kozubek, Michal (203 Czech Republic, belonging to the institution)
      Keywords in English: image segmentation; level set method; active contours
      Type of proceedings: post-proceedings
      International impact: yes
      Reviewed: yes
      Changed by: doc. RNDr. Martin Maška, Ph.D., učo 60734. Changed: 13/12/2015 02:07.
      More: https://is.muni.cz/publication/726645/en
    2. Bioinformatic and image analyses of the cellular localization of the apoptotic proteins endonuclease G, AIF, and AMID during apoptosis in human cells
      VAŘECHA, Miroslav, Jana AMRICHOVÁ, Michal ZIMMERMANN, Vladimír ULMAN, Emilie LUKÁŠOVÁ and Michal KOZUBEK. Bioinformatic and image analyses of the cellular localization of the apoptotic proteins endonuclease G, AIF, and AMID during apoptosis in human cells. Apoptosis. USA: Springer Science, 2007, vol. 12, No 7, p. 1155-1171. ISSN 1360-8185.
      Name in Czech: Bioinformatická a obrazová analýza buněčné lokalizace apoptotických proteinů endonukleázy G, AIF a AMIDu během apoptózy v lidských buňkách
      RIV/00216224:14330/07:00020060 Article in a journal. Genetics and molecular biology. English. United States of America.
      Vařecha, Miroslav (203 Czech Republic, guarantor, belonging to the institution) -- Amrichová, Jana (203 Czech Republic, belonging to the institution) -- Zimmermann, Michal (203 Czech Republic, belonging to the institution) -- Ulman, Vladimír (203 Czech Republic, belonging to the institution) -- Lukášová, Emilie (203 Czech Republic) -- Kozubek, Michal (203 Czech Republic, belonging to the institution)
      Keywords in English: apoptosis-inducing factor; endonuclease G; AIF-homologous mitochondrion-associated inducer of death; living cells; colocalization image analysis; analysis of amino acid sequence
      International impact: yes
      Reviewed: yes
      Changed by: RNDr. Vladimír Ulman, Ph.D., učo 4203. Changed: 20/6/2012 09:03.
      More: https://is.muni.cz/publication/704400/en
    3. Distinct patterns of histone methylation and acetylation in human interphase nuclei
      SKALNÍKOVÁ, Magdalena, Eva BÁRTOVÁ, Vladimír ULMAN, Petr MATULA, David SVOBODA, Andrea HARNIČAROVÁ, Michal KOZUBEK and Stanislav KOZUBEK. Distinct patterns of histone methylation and acetylation in human interphase nuclei. Physiological Research. Prague: Czech Academy of Sciences, 2007, vol. 56, No 6, p. 797-806. ISSN 0862-8408.
      Name in Czech: Rozdílné paterny metylace a acetylace histonů v lidských interfázních jádrech
      RIV/00216224:14330/07:00020185 Article in a journal. Genetics and molecular biology. English. Czech Republic.
      Skalníková, Magdalena (203 Czech Republic) -- Bártová, Eva (203 Czech Republic) -- Ulman, Vladimír (203 Czech Republic, belonging to the institution) -- Matula, Petr (203 Czech Republic, belonging to the institution) -- Svoboda, David (203 Czech Republic, belonging to the institution) -- Harničarová, Andrea (703 Slovakia, belonging to the institution) -- Kozubek, Michal (203 Czech Republic, guarantor, belonging to the institution) -- Kozubek, Stanislav (203 Czech Republic, belonging to the institution)
      Keywords in English: Histone methylation; acetylation; X chromosome; centromere; image analysis
      International impact: yes
      Reviewed: yes
      Changed by: RNDr. Vladimír Ulman, Ph.D., učo 4203. Changed: 20/6/2012 09:03.
      More: https://is.muni.cz/publication/714237/en
    4. Estimating Large Local Motion in Live-Cell Imaging Using Variational Optical Flow
      HUBENÝ, Jan, Vladimír ULMAN and Pavel MATULA. Estimating Large Local Motion in Live-Cell Imaging Using Variational Optical Flow. In VISAPP 2007 Second International Conference On Computer Vision Theory And Applications, Proceedings. Portugal: INSTICC PRESS, 2007, p. 542-548. ISBN 978-972-8865-74-0.
      Name in Czech: Odhadování velkých lokálních pohybů v in-vivo obrazových sekvencích pomocí variačních metod optického toku
      RIV/00216224:14330/07:00020059 Proceedings paper. Use of computers, robotics and its application. English. Spain.
      Hubený, Jan (203 Czech Republic, guarantor, belonging to the institution) -- Ulman, Vladimír (203 Czech Republic, belonging to the institution) -- Matula, Pavel (203 Czech Republic, belonging to the institution)
      Keywords in English: live-cell imaging motion tracking 3D imaging variational optical flow
      Type of proceedings: post-proceedings
      International impact: yes
      Reviewed: yes
      Changed by: RNDr. Vladimír Ulman, Ph.D., učo 4203. Changed: 20/6/2012 09:03.
      More: https://is.muni.cz/publication/704397/en
    5. Expression Profiling of CD34+ of Peripheral Blood of Patients with Lymphoma During ex vivo Granulocytic Differentiation
      KOUTNÁ, Irena, Lenka TESAŘOVÁ, Martin KLABUSAY, Petr KROTORÁD, Michal STREHOVSKÝ, Martina PETERKOVÁ and Viera HRABČÁKOVÁ. Expression Profiling of CD34+ of Peripheral Blood of Patients with Lymphoma During ex vivo Granulocytic Differentiation. 2007.
      URL
      Name in Czech: Expresní profilování CD34+ buněk z periferní krve pacientů s lymfomem během granulocytické diferenciace ex vivo
      RIV/00216224:14330/07:00023259 Audiovisual works. Genetics and molecular biology. English. United Kingdom of Great Britain and Northern Ireland.
      Koutná, Irena (203 Czech Republic, guarantor) -- Tesařová, Lenka (203 Czech Republic) -- Klabusay, Martin (203 Czech Republic) -- Krotorád, Petr (203 Czech Republic) -- Strehovský, Michal (703 Slovakia) -- Peterková, Martina (203 Czech Republic) -- Hrabčáková, Viera (703 Slovakia)
      Keywords in English: CD34+; cDNA microarrays; lymphoma
      International impact: yes
      Changed by: doc. RNDr. Irena Koutná, Ph.D., učo 18705. Changed: 9/1/2008 16:46.
      More: https://is.muni.cz/publication/747873/en
    6. New insights into gene positional clustering and its properties supported by large-scale analysis of various differentiation pathways
      KOUTNÁ, Irena, Petr KRONTORÁD, Zbyněk SVOBODA, Eva BÁRTOVÁ, Michal KOZUBEK and Stanislav KOZUBEK. New insights into gene positional clustering and its properties supported by large-scale analysis of various differentiation pathways. Genomics. United States: Elsevier Science Inc, 2007, vol. 89, No 1, p. 81-88. ISSN 0888-7543.
      Name in Czech: Nové poznatky v oblasti pozičního klastrování genů získané globální analýzou diferenciačních drah
      RIV/00216224:14330/07:00019031 Article in a journal. Genetics and molecular biology. English. United States of America.
      Koutná, Irena (203 Czech Republic, guarantor) -- Krontorád, Petr (203 Czech Republic) -- Svoboda, Zbyněk (203 Czech Republic) -- Bártová, Eva (203 Czech Republic) -- Kozubek, Michal (203 Czech Republic) -- Kozubek, Stanislav (203 Czech Republic)
      Keywords in English: Gene clustering; Differentiation; Microarrays; HL-60; K-562
      International impact: yes
      Reviewed: yes
      Changed by: doc. RNDr. Irena Koutná, Ph.D., učo 18705. Changed: 8/2/2008 10:16.
      More: https://is.muni.cz/publication/705063/en
    7. On Generating Ground-truth Time-lapse Image Sequences and Flow Fields
      ULMAN, Vladimír and Jan HUBENÝ. On Generating Ground-truth Time-lapse Image Sequences and Flow Fields. In Proceedings of the Fourth International Conference on Informatics in Control, Automation and Robotics. RA-1. Angers: INSTICC, 2007, p. 234-239. ISBN 978-972-8865-83-2.
      Name in Czech: O generování spolehlivých obrazových sekvencí a jejich optických toků
      RIV/00216224:14330/07:00021980 Proceedings paper. Use of computers, robotics and its application. English. France.
      Ulman, Vladimír (203 Czech Republic, guarantor) -- Hubený, Jan (203 Czech Republic)
      Keywords in English: optical flow evaluation ground-truth flow field image formation
      Type of proceedings: post-proceedings
      International impact: yes
      Reviewed: yes
      Changed by: RNDr. Vladimír Ulman, Ph.D., učo 4203. Changed: 12/6/2009 08:38.
      More: https://is.muni.cz/publication/715064/en
    8. Pseudo-real Image Sequence Generator for Optical Flow Computations
      ULMAN, Vladimír and Jan HUBENÝ. Pseudo-real Image Sequence Generator for Optical Flow Computations. In Proceedings of 15th Scandinavian Conference on Image Analysis. LNCS 4522. Heidelberg: Springer, 2007, p. 976-985. ISBN 978-3-540-73039-2.
      Name in Czech: Generátor pseudo-reálných obrazů pro výpočet optického toku
      RIV/00216224:14330/07:00021798 Proceedings paper. Informatics. English. Denmark.
      Ulman, Vladimír (203 Czech Republic, guarantor, belonging to the institution) -- Hubený, Jan (203 Czech Republic, belonging to the institution)
      Keywords in English: optical flow ground-truth flow field fluorescent microscopy image formation
      Type of proceedings: pre-proceedings
      International impact: yes
      Reviewed: yes
      Changed by: RNDr. Vladimír Ulman, Ph.D., učo 4203. Changed: 2/7/2011 05:30.
      More: https://is.muni.cz/publication/706331/en

    2006

    1. Automated analysis of multi-dimensional biomedical image data acquired using optical microscopy
      KOZUBEK, Michal. Automated analysis of multi-dimensional biomedical image data acquired using optical microscopy. Ed. R. Lechnerová, I. Saxl, V. Beneš. In Proceedings of the 6th International Conference on Stereology, Spatial Statistics and Stochastic Geometry. Prague: Union of Czech Mathematicians and Physicists, 2006, p. 465-476. ISBN 80-7015-037-8.
      Name in Czech: Automatická analýza vícerozměrných biomedicínských obrazových dat získaných pomocí optické mikroskopie
      RIV/00216224:14330/06:00018293 Proceedings paper. Use of computers, robotics and its application. English. Czech Republic.
      Kozubek, Michal (203 Czech Republic, guarantor)
      Keywords in English: image analysis; biomedical applications; multidimensional data; human genome; optical microscopy; automation
      Type of proceedings: post-proceedings
      International impact: yes
      Reviewed: yes
      Changed by: prof. RNDr. Michal Kozubek, Ph.D., učo 3740. Changed: 7/5/2010 09:02.
      More: https://is.muni.cz/publication/708749/en
    2. Automatic Detection of Histones on Chromosome X in Images of Cell Nuclei
      ULMAN, Vladimír. Automatic Detection of Histones on Chromosome X in Images of Cell Nuclei. Clinician and Technology (Lékař a technika). Praha: Czech Medical Association J.E.Purkyne, 2006, roč. 36, No 2, p. 160-164. ISSN 0301-5491.
      Name in Czech: Automatická detekce histonů u chromosomu X v obrazech buněčného jádra
      RIV/00216224:14330/06:00015770 Article in a journal. Informatics. English. Czech Republic.
      Ulman, Vladimír (203 Czech Republic, guarantor)
      Keywords in English: image registration; voxel-based registration; top-hat filtering; image analysis
      International impact: yes
      Reviewed: yes
      Changed by: RNDr. Vladimír Ulman, Ph.D., učo 4203. Changed: 2/6/2010 16:27.
      More: https://is.muni.cz/publication/639606/en
    3. Comparative transcriptome maps: a new approach to the diagnosis of colorectal carcinoma patients using cDNA microarrays
      JANSOVÁ, Eva, Irena KOUTNÁ, Petr KRONTORÁD, Zbyněk SVOBODA, Silvie KŘIVÁNKOVÁ, Jan ŽALOUDÍK, Michal KOZUBEK and Stanislav KOZUBEK. Comparative transcriptome maps: a new approach to the diagnosis of colorectal carcinoma patients using cDNA microarrays. Clinical Genetics. Denmark: Blackwell Munksgaard, 2006, vol. 69, No 3, p. 218-227. ISSN 0009-9163.
      Name in Czech: Srovnávací transkripční mapy: nový přístup v diagnostice pacientů s kolorektálním karcinomem pomocí cDNA microarrays
      Name (in English): Comparative transcriptome maps: a new approach to the diagnosis of colorectal carcinoma patients using cDNA microarrays
      RIV/00216224:14330/06:00015299 Article in a journal. Genetics and molecular biology. English. Denmark.
      Jansová, Eva (203 Czech Republic, guarantor) -- Koutná, Irena (203 Czech Republic) -- Krontorád, Petr (203 Czech Republic) -- Svoboda, Zbyněk (203 Czech Republic) -- Křivánková, Silvie (203 Czech Republic) -- Žaloudík, Jan (203 Czech Republic) -- Kozubek, Michal (203 Czech Republic) -- Kozubek, Stanislav (203 Czech Republic)
      Keywords in English: colorectal carcinoma; cDNA microarrays; transcriptome map; functional clustering; expression profiles
      International impact: yes
      Reviewed: yes
      Changed by: prof. RNDr. Michal Kozubek, Ph.D., učo 3740. Changed: 7/5/2010 09:05.
      More: https://is.muni.cz/publication/622604/en
    4. Evaluation of CD34+ - and Lin- -selected cells from peripheral blood stem cell grafts of patients with lymphoma during differentiation in culture ex vivo using a cDNA microarray technique
      KOUTNÁ, Irena, Martin KLABUSAY, Viera HRABČÁKOVÁ, Petr KRONTORÁD, Zbyněk SVOBODA, Michal KOZUBEK and Jiří MAYER. Evaluation of CD34+ - and Lin- -selected cells from peripheral blood stem cell grafts of patients with lymphoma during differentiation in culture ex vivo using a cDNA microarray technique. Experimental hematology. Netherlands: Elsevier Science Inc, 2006, vol. 34, No 7, p. 832-840, 10 pp. ISSN 0301-472X.
      Name in Czech: Analýza CD34+ a Lin- kmenových buněk z periferních krve pacientů s lymfomem během ex vivo diferenciace v kultuře pomocí techniky DNA microarray
      RIV/00216224:14330/06:00016104 Article in a journal. Oncology and haematology. English. Netherlands.
      Koutná, Irena (203 Czech Republic, guarantor) -- Klabusay, Martin (203 Czech Republic) -- Hrabčáková, Viera (703 Slovakia) -- Krontorád, Petr (203 Czech Republic) -- Svoboda, Zbyněk (203 Czech Republic) -- Kozubek, Michal (203 Czech Republic) -- Mayer, Jiří (203 Czech Republic)
      Keywords in English: Hematopoietic stem cells; hematopoietic transplantation; cytokines; ex vivo expansion; immunomagnetic separation
      International impact: yes
      Reviewed: yes
      Changed by: doc. RNDr. Irena Koutná, Ph.D., učo 18705. Changed: 12/12/2006 10:39.
      More: https://is.muni.cz/publication/705058/en
    5. Fast Point-Based 3D Alignment of Live Cells
      MATULA, Petr, Pavel MATULA, Michal KOZUBEK and Vladimír DVOŘÁK. Fast Point-Based 3D Alignment of Live Cells. IEEE Transactions on Image Processing. 2006, vol. 15, No 8, p. 2388-2396. ISSN 1057-7149.
      Name in Czech: Rychlé lícování 3D obrazů živých buněk založené na bodech
      RIV/00216224:14330/06:00015279 Article in a journal. Informatics. English. United States of America.
      Matula, Petr (203 Czech Republic, guarantor) -- Matula, Pavel (203 Czech Republic) -- Kozubek, Michal (203 Czech Republic) -- Dvořák, Vladimír (203 Czech Republic)
      Keywords in English: Live cell imaging; point pattern matching; 3D image registration
      International impact: yes
      Reviewed: yes
      Changed by: prof. RNDr. Michal Kozubek, Ph.D., učo 3740. Changed: 18/1/2007 18:27.
      More: https://is.muni.cz/publication/581001/en
    6. Improved 3D Reconstruction of Interphase Chromosomes Based on Nonlinear Diffusion Filtering
      HUBENÝ, Jan, Pavel MATULA, Petr MATULA and Michal KOZUBEK. Improved 3D Reconstruction of Interphase Chromosomes Based on Nonlinear Diffusion Filtering. In Proceedings of PDE-Based Image Processing and Related Inverse Problems. Berlin: Springer-Verlag, 2006, p. 163-173, 10 pp. ISBN 3-540-33266-9.
      Name in Czech: Vylepšení 3D rekonstrukce chromosomů v interfázi založené na nelineárním difúzním filtrování
      RIV/00216224:14330/06:00015590 Proceedings paper. Informatics. English. Germany.
      Hubený, Jan (203 Czech Republic, guarantor) -- Matula, Pavel (203 Czech Republic) -- Matula, Petr (203 Czech Republic) -- Kozubek, Michal (203 Czech Republic)
      Keywords in English: Nonlinear diffusion filtering; PDE based image processing; interphase chromosomes; biomedical application
      Type of proceedings: post-proceedings
      International impact: yes
      Reviewed: yes
      Changed by: doc. RNDr. Pavel Matula, Ph.D., učo 2927. Changed: 18/3/2008 01:16.
      More: https://is.muni.cz/publication/622564/en
    7. Localization of genetic elements of intact and derivative chromosome 11 and 22 territories in nuclei of Ewing sarcoma cells
      TASLEROVÁ, Renata, Stanislav KOZUBEK, Eva BÁRTOVÁ, Pavla GAJDUŠKOVÁ, Roman KODET and Michal KOZUBEK. Localization of genetic elements of intact and derivative chromosome 11 and 22 territories in nuclei of Ewing sarcoma cells. Journal of Structural Biology. San Diego,USA: Academic Press, 2006, vol. 155, No 3, p. 493-504. ISSN 1047-8477.
      RIV/00216224:14330/06:00040618 Article in a journal. Genetics and molecular biology. English. United States of America.
      Taslerová, Renata (203 Czech Republic) -- Kozubek, Stanislav (203 Czech Republic, guarantor) -- Bártová, Eva (203 Czech Republic) -- Gajdušková, Pavla (203 Czech Republic) -- Kodet, Roman (203 Czech Republic) -- Kozubek, Michal (203 Czech Republic)
      Keywords in English: HIGH-RESOLUTION CYTOMETRY; HUMAN LEUKEMIC-CELLS; HUMAN-LYMPHOCYTES; EXCHANGE ABERRATIONS; SPATIAL-ORGANIZATION; INTERPHASE NUCLEUS; BCR GENES; DOMAINS; CYCLE; TOPOGRAPHY
      International impact: yes
      Reviewed: yes
      Changed by: prof. RNDr. Michal Kozubek, Ph.D., učo 3740. Changed: 30/10/2010 11:09.
      More: https://is.muni.cz/publication/904676/en
    8. Transcription density map as a new tool for evaluation of various expression profiles: Ex vivo differentiation of CD34+ cells
      KOUTNÁ, Irena, Petr KRONTORÁD, Lenka TESAŘOVÁ, Martin KLABUSAY, Viera HRABČÁKOVÁ and Michal KOZUBEK. Transcription density map as a new tool for evaluation of various expression profiles: Ex vivo differentiation of CD34+ cells. In ISREC Conference on Cancer Research. 2006.
      Name in Czech: Hustotní transkripční mapy jako nový nástroj pro porovnávání expresních profilů; Ex vivo diferenciace CD34+ buněk
      RIV/00216224:14330/06:00040704 Conference abstract. Genetics and molecular biology. English. Switzerland.
      Koutná, Irena (203 Czech Republic, guarantor) -- Krontorád, Petr (203 Czech Republic) -- Tesařová, Lenka (203 Czech Republic) -- Klabusay, Martin (203 Czech Republic) -- Hrabčáková, Viera (703 Slovakia) -- Kozubek, Michal (203 Czech Republic)
      Keywords in English: microarrays; gene expression
      Type of participation: active participation (giving a lecture, organization, etc.)
      International impact: yes
      Reviewed: yes
      Changed by: doc. RNDr. Irena Koutná, Ph.D., učo 18705. Changed: 7/6/2010 11:40.
      More: https://is.muni.cz/publication/708362/en

    2005

    1. Analysis of biomedical image data acquired using optical microscopy
      KOZUBEK, Michal, Pavel MATULA, Petr MATULA and David SVOBODA. Analysis of biomedical image data acquired using optical microscopy. In Prague Post Genome Technology Workshop. Prague, Czech Republic: Czech Pattern Recognition Society, 2005, p. 24-27. ISBN 80-01-03239-6.
      Name in Czech: Analýza biomedicínských dat pořízených na optickém mikroskopu
      RIV/00216224:14330/05:00012538 Proceedings paper. Use of computers, robotics and its application. English. Czech Republic.
      Kozubek, Michal (203 Czech Republic, guarantor) -- Matula, Pavel (203 Czech Republic) -- Matula, Petr (203 Czech Republic) -- Svoboda, David (203 Czech Republic)
      Keywords in English: optical microscope; image analysis; image reconstruction; image registration
      International impact: yes
      Reviewed: yes
      Changed by: prof. RNDr. Michal Kozubek, Ph.D., učo 3740. Changed: 7/5/2010 09:11.
      More: https://is.muni.cz/publication/573496/en
    2. cDNA Microarray Technology as a Tool for Better Understanding of Progress of Malignant Diseases
      KOUTNÁ, Irena, Eva JANSOVÁ, Petr KRONTORÁD, Zbyněk SVOBODA, Michal KOZUBEK and Stanislav KOZUBEK. cDNA Microarray Technology as a Tool for Better Understanding of Progress of Malignant Diseases. In Prague Post Genome Technology Workshop. Prague, Czech Republic: Czech Pattern Recognition Society, 2005, p. 69-72. ISBN 80-01-03239-6.
      Name in Czech: cDNA microarray technologie jako nástroj k lepšímu pochopení progrese maligních onemocnění
      RIV/00216224:14330/05:00013836 Proceedings paper. Genetics and molecular biology. English. Czech Republic.
      Koutná, Irena (203 Czech Republic) -- Jansová, Eva (203 Czech Republic) -- Krontorád, Petr (203 Czech Republic) -- Svoboda, Zbyněk (203 Czech Republic) -- Kozubek, Michal (203 Czech Republic, guarantor) -- Kozubek, Stanislav (203 Czech Republic)
      Keywords in English: microarray
      International impact: yes
      Reviewed: yes
      Changed by: prof. RNDr. Michal Kozubek, Ph.D., učo 3740. Changed: 7/5/2010 09:29.
      More: https://is.muni.cz/publication/573507/en
    3. Mosaicking of High-resolution Biomedical Images Acquired from Wide-field Optical Microscope
      ULMAN, Vladimír. Mosaicking of High-resolution Biomedical Images Acquired from Wide-field Optical Microscope. In Proceedings of the 3rd European Medical and Biological Engineering Conference EMBEC'05. Praha: IFMBE Proceedings Series, vol. 11, 2005, p. 1-5. ISSN 1727-1983.
      Name in Czech: Skládání biomedicínských obrazů o velmi vysokém rozlišení pořízených na optickém mikroskopu
      RIV/00216224:14330/05:00014518 Proceedings paper. Informatics. English. Czech Republic.
      Ulman, Vladimír (203 Czech Republic, guarantor, belonging to the institution)
      Keywords in English: image processing; image registration; graph representation
      International impact: yes
      Reviewed: yes
      Changed by: RNDr. Vladimír Ulman, Ph.D., učo 4203. Changed: 2/7/2011 05:29.
      More: https://is.muni.cz/publication/608804/en

    2004

    1. Automated acquisition and processing of multidimensional image data in confocal in vivo microscopy
      KOZUBEK, Michal, Petr MATULA, Pavel MATULA and Stanislav KOZUBEK. Automated acquisition and processing of multidimensional image data in confocal in vivo microscopy. Microscopy research and technique. USA: Wiley-Liss, 2004, vol. 64, No 2, p. 164-175. ISSN 1059-910X.
      Name in Czech: Automatické snímání a zpracování multidimenzionálních obrazových dat v konfokální in vivo mikroskopii
      RIV/00216224:14330/04:00009712 Article in a journal. Use of computers, robotics and its application. English. United States of America.
      Kozubek, Michal (203 Czech Republic, guarantor) -- Matula, Petr (203 Czech Republic) -- Matula, Pavel (203 Czech Republic) -- Kozubek, Stanislav (203 Czech Republic)
      Keywords in English: automated microscopy; confocal microscopy; in vivo imaging; Nipkow disk
      International impact: yes
      Reviewed: yes
      Changed by: doc. RNDr. Petr Matula, Ph.D., učo 3019. Changed: 6/5/2009 12:37.
      More: https://is.muni.cz/publication/564368/en
    2. Automated confocal microscopy: The way of achieving both quality and quantity in 3D image cytometry
      KOZUBEK, Michal, Petr MATULA and Pavel MATULA. Automated confocal microscopy: The way of achieving both quality and quantity in 3D image cytometry. In International Symposium on Biomedical Imaging. Arlington, USA: IEEE, 2004, p. 69-72. ISBN 0-7803-8389-3.
      Name in Czech: Automatizovaná konfokální mikroskopie: Způsob dosažení jak kvality tak kvantity v 3D obrazové cytometrii
      RIV/00216224:14330/04:00009713 Proceedings paper. Use of computers, robotics and its application. English. United States of America.
      Kozubek, Michal (203 Czech Republic, guarantor) -- Matula, Petr (203 Czech Republic) -- Matula, Pavel (203 Czech Republic)
      Keywords in English: image cytometry; confocal microscopy
      International impact: yes
      Reviewed: yes
      Changed by: prof. RNDr. Michal Kozubek, Ph.D., učo 3740. Changed: 7/5/2010 15:36.
      More: https://is.muni.cz/publication/564376/en

    2003

    1. Arrangement of chromosome 11 and 22 territories, EWSR1 and FLI-1 genes, and other genetic elements of these chromosomes in human lymphocytes and Ewing sarcoma cells
      TASLEROVÁ, Renata, Stanislav KOZUBEK, Emilie LUKÁŠOVÁ, Pavla JIRSOVÁ, Eva BÁRTOVÁ and Michal KOZUBEK. Arrangement of chromosome 11 and 22 territories, EWSR1 and FLI-1 genes, and other genetic elements of these chromosomes in human lymphocytes and Ewing sarcoma cells. Human Genetics. 2003, vol. 112, No 2, p. 143-155. ISSN 0340-6717.
      RIV/00216224:14330/03:00007922 Article in a journal. Oncology and haematology. English. Germany.
      Taslerová, Renata (203 Czech Republic) -- Kozubek, Stanislav (203 Czech Republic) -- Lukášová, Emilie (203 Czech Republic) -- Jirsová, Pavla (203 Czech Republic) -- Bártová, Eva (203 Czech Republic) -- Kozubek, Michal (203 Czech Republic, guarantor)
      Keywords in English: human genome structure; interphase cell nuclei
      International impact: yes
      Reviewed: yes
      Changed by: prof. RNDr. Michal Kozubek, Ph.D., učo 3740. Changed: 7/5/2010 15:51.
      More: https://is.muni.cz/publication/406051/en
    2. Nuclear and territorial topography of chromosome telomeres in human lymphocytes
      AMRICHOVÁ, Jana, Emilie LUKÁŠOVÁ, Stanislav KOZUBEK and Michal KOZUBEK. Nuclear and territorial topography of chromosome telomeres in human lymphocytes. Experimental Cell Research. Elsevier Science, USA, 2003, vol. 289, No 1, p. 11-26. ISSN 0014-4827.
      URL
      Name (in English): Nuclear and territorial topography of chromosome telomeres in human lymphocytes
      RIV/00216224:14330/03:00008551 Article in a journal. Genetics and molecular biology. English. United States of America.
      Amrichová, Jana (203 Czech Republic) -- Lukášová, Emilie (203 Czech Republic) -- Kozubek, Stanislav (203 Czech Republic) -- Kozubek, Michal (203 Czech Republic, guarantor)
      Keywords in English: nuclear architecture; telomere; centromere; chromosome territory; chromatin structure; interphase chromosome; human lymphocytes; telomere association; telomere tethering
      International impact: yes
      Reviewed: yes
      Changed by: prof. RNDr. Michal Kozubek, Ph.D., učo 3740. Changed: 7/5/2010 08:42.
      More: https://is.muni.cz/publication/485603/en
    3. Precise 3D image alignment in micro-axial tomography
      MATULA, Petr, Michal KOZUBEK, Florian STAIER and Michael HAUSMANN. Precise 3D image alignment in micro-axial tomography. Journal of Microscopy. Oxford: Blackwell Science, 2003, vol. 209, No 2, p. 126-142. ISSN 0022-2720.
      RIV/00216224:14330/03:00008544 Article in a journal. Use of computers, robotics and its application. English. United Kingdom of Great Britain and Northern Ireland.
      Matula, Petr (203 Czech Republic, guarantor) -- Kozubek, Michal (203 Czech Republic) -- Staier, Florian (276 Germany) -- Hausmann, Michael (276 Germany)
      Keywords in English: assignment; image fusion; image registration; Kuhn-Munkres algorithm; micro-axial tomography; resolution improvement
      International impact: yes
      Reviewed: yes
      Changed by: doc. RNDr. Petr Matula, Ph.D., učo 3019. Changed: 6/5/2009 10:56.
      More: https://is.muni.cz/publication/484897/en

    2002

    1. Automated micro axial tomography of cell nuclei after specific labelling by fluorescence in situ hybridisation
      KOZUBEK, Michal, Magdalena SKALNÍKOVÁ, Petr MATULA, Eva BÁRTOVÁ, Joachim RAUCH, Friedrich NEUHAUS, Heinz EIPEL and Michael HAUSMANN. Automated micro axial tomography of cell nuclei after specific labelling by fluorescence in situ hybridisation. Micron. Amsterdam: Elsevier, 2002, vol. 33, No 7, p. 655-665. ISSN 0968-4328.
      RIV/00216224:14330/02:00006215 Article in a journal. Use of computers, robotics and its application. English. Netherlands.
      Kozubek, Michal (203 Czech Republic, guarantor) -- Skalníková, Magdalena (203 Czech Republic) -- Matula, Petr (203 Czech Republic) -- Bártová, Eva (203 Czech Republic) -- Rauch, Joachim (276 Germany) -- Neuhaus, Friedrich (276 Germany) -- Eipel, Heinz (276 Germany) -- Hausmann, Michael (276 Germany)
      Keywords in English: micro axial tomography; automated microscopy; high-resolution cytometry; FISH imaging; interphase cell nuclei
      International impact: yes
      Reviewed: yes
      Changed by: doc. RNDr. Petr Matula, Ph.D., učo 3019. Changed: 6/5/2009 10:59.
      More: https://is.muni.cz/publication/404450/en
    2. 3D Structure of the human genome: Order in randomness
      KOZUBEK, Stanislav, Emilie LUKÁŠOVÁ, Pavla JIRSOVÁ, Irena KOUTNÁ, Michal KOZUBEK, Alena GAŇOVÁ, Eva BÁRTOVÁ, Martin FALK and Renata TASLEROVÁ. 3D Structure of the human genome: Order in randomness. Chromosoma. Berlin: Springer-Verlag, 2002, vol. 111, No 5, p. 321-331. ISSN 0009-5915.
      RIV/00216224:14330/02:00006554 Article in a journal. Genetics and molecular biology. English. Germany.
      Kozubek, Stanislav (203 Czech Republic, belonging to the institution) -- Lukášová, Emilie (203 Czech Republic) -- Jirsová, Pavla (203 Czech Republic) -- Koutná, Irena (203 Czech Republic, belonging to the institution) -- Kozubek, Michal (203 Czech Republic, guarantor, belonging to the institution) -- Gaňová, Alena (203 Czech Republic, belonging to the institution) -- Bártová, Eva (203 Czech Republic, belonging to the institution) -- Falk, Martin (203 Czech Republic) -- Taslerová, Renata (203 Czech Republic, belonging to the institution)
      Keywords in English: human genome structure; interphase cell nuclei
      International impact: yes
      Reviewed: yes
      Changed by: doc. RNDr. Martin Falk, Ph.D., učo 9835. Changed: 24/8/2012 12:23.
      More: https://is.muni.cz/publication/406042/en

    2001

    1. Combined confocal and wide-field high-resolution cytometry of FISH-stained cells
      KOZUBEK, Michal, Stanislav KOZUBEK, Emilie LUKÁŠOVÁ, Eva BÁRTOVÁ, Magdalena SKALNÍKOVÁ, Pavel MATULA, Petr MATULA, Pavla JIRSOVÁ, Alena GAŇOVÁ and Irena KOUTNÁ. Combined confocal and wide-field high-resolution cytometry of FISH-stained cells. Cytometry. New York: International Society for Analytical Cyt, 2001, vol. 45, No 1, p. 1-12. ISSN 0196-4763.
      URL
      RIV/00216224:14330/01:00004339 Article in a journal. Use of computers, robotics and its application. English. United States of America.
      Kozubek, Michal (203 Czech Republic, guarantor, belonging to the institution) -- Kozubek, Stanislav (203 Czech Republic) -- Lukášová, Emilie (203 Czech Republic) -- Bártová, Eva (203 Czech Republic) -- Skalníková, Magdalena (203 Czech Republic, belonging to the institution) -- Matula, Pavel (203 Czech Republic, belonging to the institution) -- Matula, Petr (203 Czech Republic, belonging to the institution) -- Jirsová, Pavla (203 Czech Republic, belonging to the institution) -- Gaňová, Alena (203 Czech Republic, belonging to the institution) -- Koutná, Irena (203 Czech Republic, belonging to the institution)
      Keywords in English: high-resolution cytometry; fluorescence in situ hybridization; interphase nuclei; fluorescence microscopy; automated microscopy; image analysis; 3-D analysis
      International impact: yes
      Reviewed: yes
      Changed by: prof. RNDr. Michal Kozubek, Ph.D., učo 3740. Changed: 29/1/2021 18:38.
      More: https://is.muni.cz/publication/366392/en
    2. Theoretical versus experimental resolution in optical microscopy
      KOZUBEK, Michal. Theoretical versus experimental resolution in optical microscopy. Microscopy research and technique. USA: Wiley-Liss, 2001, vol. 53, No 2, p. 157-166. ISSN 1059-910X. Available from: https://dx.doi.org/10.1002/jemt.1080.
      URL
      RIV/00216224:14330/01:00004204 Article in a journal. Use of computers, robotics and its application. English. United States of America.
      Kozubek, Michal (203 Czech Republic, guarantor, belonging to the institution)
      Keywords in English: resolution; confocal microscopy; wide-field microscopy; image processing; fluorescent bead
      International impact: yes
      Reviewed: yes
      Changed by: prof. RNDr. Michal Kozubek, Ph.D., učo 3740. Changed: 29/1/2021 18:32.
      More: https://is.muni.cz/publication/362371/en

    2000

    1. An efficient algorithm for measurement and correction of chromatic aberrations in fluorescence microscopy
      KOZUBEK, Michal and Petr MATULA. An efficient algorithm for measurement and correction of chromatic aberrations in fluorescence microscopy. Journal of Microscopy. Oxford: Blackwell Science, 2000, vol. 200, No 3, p. 206-217. ISSN 0022-2720.
      URL
      RIV/00216224:14330/00:00002780 Article in a journal. Use of computers, robotics and its application. English. United Kingdom of Great Britain and Northern Ireland.
      Kozubek, Michal (203 Czech Republic, guarantor, belonging to the institution) -- Matula, Petr (203 Czech Republic, belonging to the institution)
      Keywords in English: chromatic aberration; fluorescence microscopy; fluorescent bead; image analysis
      International impact: yes
      Reviewed: yes
      Changed by: prof. RNDr. Michal Kozubek, Ph.D., učo 3740. Changed: 29/1/2021 18:40.
      More: https://is.muni.cz/publication/346313/en
    2. Spatial arrangement of genes, centromeres and chromosomes in human blood cell nuclei and its changes during the cell cycle, differentiation and after irradiation
      SKALNÍKOVÁ, Magdalena, Stanislav KOZUBEK, Emilie LUKÁŠOVÁ, Eva BÁRTOVÁ, Pavla JIRSOVÁ, Alena CAFOURKOVÁ, Irena KOUTNÁ and Michal KOZUBEK. Spatial arrangement of genes, centromeres and chromosomes in human blood cell nuclei and its changes during the cell cycle, differentiation and after irradiation. Chromosome Research. Dordrecht: Kluwer Academic, 2000, vol. 8, No 6, p. 487-499. ISSN 0967-3849.
      abstract
      RIV/00216224:14330/00:00002779 Article in a journal. Genetics and molecular biology. English. Netherlands.
      Skalníková, Magdalena (203 Czech Republic) -- Kozubek, Stanislav (203 Czech Republic) -- Lukášová, Emilie (203 Czech Republic) -- Bártová, Eva (203 Czech Republic) -- Jirsová, Pavla (203 Czech Republic) -- Cafourková, Alena (203 Czech Republic) -- Koutná, Irena (203 Czech Republic) -- Kozubek, Michal (203 Czech Republic)
      Keywords in English: cell cycle; chromosomes; differentiation; image analysis; nuclear structure
      International impact: yes
      Reviewed: yes
      Changed by: prof. RNDr. Michal Kozubek, Ph.D., učo 3740. Changed: 7/5/2010 17:06.
      More: https://is.muni.cz/publication/346312/en
    3. Topography of genetic loci in tissue samples: towards new diagnostic tool using interphase FISH and high-resolution image analysis techniques
      KOUTNÁ, Irena, Stanislav KOZUBEK, Jan ŽALOUDÍK, Michal KOZUBEK, Emilie LUKÁŠOVÁ, Pavel MATULA, Eva BÁRTOVÁ, Magdalena SKALNÍKOVÁ, Alena CAFOURKOVÁ and Pavla JIRSOVÁ. Topography of genetic loci in tissue samples: towards new diagnostic tool using interphase FISH and high-resolution image analysis techniques. Analytical Cellular Pathology. Amsterdam: IOS Press, 2000, vol. 20, No 4, p. 173-185. ISSN 0921-8912.
      abstract
      RIV/00216224:14330/00:00002781 Article in a journal. Genetics and molecular biology. English. Netherlands.
      Koutná, Irena (203 Czech Republic) -- Kozubek, Stanislav (203 Czech Republic) -- Žaloudík, Jan (203 Czech Republic) -- Kozubek, Michal (203 Czech Republic) -- Lukášová, Emilie (203 Czech Republic) -- Matula, Pavel (203 Czech Republic) -- Bártová, Eva (203 Czech Republic) -- Skalníková, Magdalena (203 Czech Republic) -- Cafourková, Alena (203 Czech Republic) -- Jirsová, Pavla (203 Czech Republic)
      Keywords in English: FISH; high-resolution image analysis
      International impact: yes
      Reviewed: yes
      Changed by: prof. RNDr. Michal Kozubek, Ph.D., učo 3740. Changed: 7/5/2010 17:08.
      More: https://is.muni.cz/publication/346315/en

    1999

    1. Advances in computer analysis of radiation-induced changes in human genome
      KOZUBEK, Michal, Stanislav KOZUBEK, Emilie LUKÁŠOVÁ, Leonard RÝZNAR, Andrea LIŠKOVÁ, Jana AMRICHOVÁ and Gerda HORNECK. Advances in computer analysis of radiation-induced changes in human genome. edited by C.Baumstark-Khan, S.Kozubek, G.Horneck. In Fundamentals for the assesment of risks from environmental radiation. Dordrecht: Kluwer Academic Publishers, 1999, p. 243-248. ISBN 0-7923-5667-5.
      RIV/00216224:14330/99:00001462 Proceedings paper. Use of computers, robotics and its application. English. Netherlands.
      Kozubek, Michal (203 Czech Republic) -- Kozubek, Stanislav (203 Czech Republic) -- Lukášová, Emilie (203 Czech Republic) -- Amrichová, Jana (203 Czech Republic)
      Changed by: Ing. Libor Holuša, CSc., učo 83458. Changed: 8/7/2003 09:49.
      More: https://is.muni.cz/publication/223633/en
    2. High-resolution cytometry of FISH dots in interphase cell nuclei
      KOZUBEK, Michal, Stanislav KOZUBEK, Emilie LUKÁŠOVÁ, Andrea MAREČKOVÁ, Eva BÁRTOVÁ, Magdalena SKALNÍKOVÁ and Adriana JERGOVÁ. High-resolution cytometry of FISH dots in interphase cell nuclei. Cytometry. New York: International Society for Analytical Cyt, 1999, vol. 36, No 4, p. 279-293. ISSN 0196-4763.
      RIV/00216224:14330/99:00001446 Article in a journal. Use of computers, robotics and its application. English. United States of America.
      Kozubek, Michal (203 Czech Republic) -- Kozubek, Stanislav (203 Czech Republic) -- Lukášová, Emilie (203 Czech Republic) -- Bártová, Eva (203 Czech Republic) -- Skalníková, Magdalena (203 Czech Republic) -- Jergová, Adriana (203 Czech Republic)
      Keywords in English: fluorescence in situ hybridization; interphase nuclei; fluorescence microscopy; automated microscopy; image analysis; 3-D analysis; high-resolution cytometry
      International impact: yes
      Reviewed: yes
      Changed by: prof. RNDr. Michal Kozubek, Ph.D., učo 3740. Changed: 7/5/2010 17:12.
      More: https://is.muni.cz/publication/223212/en

    1998

    1. Semi-automated FISH-stained interphase nuclei analysis in human genome studies
      KOZUBEK, Michal, Stanislav KOZUBEK, Emilie LUKÁŠOVÁ, Jana AMRICHOVÁ, Leonard RÝZNAR and Andrea LIŠKOVÁ. Semi-automated FISH-stained interphase nuclei analysis in human genome studies. edited by J.Slavík. In Fluorescence Microscopy and Fluorescent Probes. vol.2. New York: Plenum, 1998, p. 173-179. ISBN 0-306-46021-1.
      RIV/00216224:14330/98:00001507 Proceedings paper. Use of computers, robotics and its application. English. United States of America.
      Kozubek, Michal (203 Czech Republic) -- Kozubek, Stanislav (203 Czech Republic) -- Lukášová, Emilie (203 Czech Republic) -- Amrichová, Jana (203 Czech Republic) -- Lišková, Andrea (203 Czech Republic)
      Keywords in English: image analysis; automated microscopy; fluorescence in situ hybridization; interphase nuclei
      International impact: yes
      Reviewed: yes
      Changed by: prof. RNDr. Michal Kozubek, Ph.D., učo 3740. Changed: 7/5/2010 17:17.
      More: https://is.muni.cz/publication/224633/en

    1997

    1. Distribution of ABL and BCR genes in cell nuclei of normal and irradiated lymphocytes
      KOZUBEK, Stanislav, Emilie LUKÁŠOVÁ, Leonard RÝZNAR, Michal KOZUBEK, Raisa GOVORUN, Evgenij KRASAVIN and Gerda HORNECK. Distribution of ABL and BCR genes in cell nuclei of normal and irradiated lymphocytes. Blood. 1997, vol. 89, No 12, p. 4537-4545. ISSN 0006-4971.
      RIV/00216224:14330/97:00001510 Article in a journal. Biophysics. English. United States of America.
      Kozubek, Stanislav (203 Czech Republic) -- Lukášová, Emilie (203 Czech Republic) -- Kozubek, Michal (203 Czech Republic)
      Keywords in English: nuclear topography; ABL; BCR
      International impact: yes
      Reviewed: yes
      Changed by: prof. RNDr. Michal Kozubek, Ph.D., učo 3740. Changed: 7/5/2010 17:24.
      More: https://is.muni.cz/publication/224656/en
    2. Localisation and distance between ABL and BCR genes in interphase nuclei of bone marrow cells of control donors and patients with chronic myeloid leukemia
      LUKÁŠOVÁ, Emilie, Stanislav KOZUBEK, Michal KOZUBEK, Jana KJERONSKÁ, Leonard RÝZNAR, Jana HORÁKOVÁ, Eva KRAHULCOVÁ and Gerda HORNECK. Localisation and distance between ABL and BCR genes in interphase nuclei of bone marrow cells of control donors and patients with chronic myeloid leukemia. Human Genetics. 1997, vol. 100, 5/6, p. 525-535. ISSN 0340-6717.
      RIV/00216224:14330/97:00001513 Article in a journal. Oncology and haematology. English. Germany.
      Lukášová, Emilie (203 Czech Republic) -- Kozubek, Stanislav (203 Czech Republic) -- Kozubek, Michal (203 Czech Republic) -- Krahulcová, Eva (203 Czech Republic)
      Keywords in English: nuclear topography; ABL; BCR; interphase nuclei; bone marrow; CML
      International impact: yes
      Reviewed: yes
      Changed by: prof. RNDr. Michal Kozubek, Ph.D., učo 3740. Changed: 7/5/2010 17:25.
      More: https://is.muni.cz/publication/224672/en
    3. Optical transfer functions of 4Pi confocal microscopes : theory and experiment
      SCHRADER, Martin, Michal KOZUBEK, Stefan HELL and Tony WILSON. Optical transfer functions of 4Pi confocal microscopes : theory and experiment. Optics Letters. 1997, vol. 22, No 7, p. 436-438. ISSN 0146-9592.
      RIV/00216224:14330/97:00001526 Article in a journal. Optics, masers and lasers. English. United States of America.
      Kozubek, Michal (203 Czech Republic)
      Keywords in English: confocal microscopy; 4Pi; OTF
      International impact: yes
      Reviewed: yes
      Changed by: prof. RNDr. Michal Kozubek, Ph.D., učo 3740. Changed: 7/5/2010 17:25.
      More: https://is.muni.cz/publication/224817/en

    1996

    1. Confocal microscopy by aperture correlation
      WILSON, Tony, Rimas JUŠKAITIS, Mark NEIL and Michal KOZUBEK. Confocal microscopy by aperture correlation. Optics Letters. 1996, vol. 21, No 23, p. 1879-1881. ISSN 0146-9592.
      RIV/00216224:14330/96:00001524 Article in a journal. Optics, masers and lasers. English. United States of America.
      Kozubek, Michal (203 Czech Republic)
      Keywords in English: confocal microscopy; SCAM
      International impact: yes
      Reviewed: yes
      Changed by: prof. RNDr. Michal Kozubek, Ph.D., učo 3740. Changed: 7/5/2010 17:26.
      More: https://is.muni.cz/publication/224812/en
    2. Efficient real-time confocal microscopy with white light sources
      JUŠKAITIS, Rimas, Tony WILSON, Mark NEIL and Michal KOZUBEK. Efficient real-time confocal microscopy with white light sources. Nature. 1996, vol. 383, No 6603, p. 804-806. ISSN 0028-0836.
      RIV/00216224:14330/96:00001521 Article in a journal. Optics, masers and lasers. English. United Kingdom of Great Britain and Northern Ireland.
      Kozubek, Michal (203 Czech Republic)
      Keywords in English: confocal microscopy; SCAM
      International impact: yes
      Reviewed: yes
      Changed by: prof. RNDr. Michal Kozubek, Ph.D., učo 3740. Changed: 7/5/2010 17:26.
      More: https://is.muni.cz/publication/224771/en
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